Wall clock time and date at job start Fri Apr 10 2020 18:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36843 * 120.00304 * 2 1 4 4 H 1.08001 * 120.00129 * 145.08262 * 3 2 1 5 5 C 1.38992 * 120.00209 * 325.07997 * 3 2 1 6 6 N 1.31407 * 119.99894 * 42.52690 * 5 3 2 7 7 Si 1.86800 * 120.00159 * 222.52823 * 5 3 2 8 8 H 1.48493 * 109.47396 * 90.00012 * 7 5 3 9 9 H 1.48507 * 109.46804 * 209.99703 * 7 5 3 10 10 H 1.48493 * 109.47059 * 329.99578 * 7 5 3 11 11 C 1.34787 * 119.99672 * 180.02562 * 2 1 3 12 12 O 1.21795 * 119.99407 * 185.78699 * 11 2 1 13 13 C 1.46329 * 120.00114 * 5.78305 * 11 2 1 14 14 C 1.36496 * 125.54772 * 351.56173 * 13 11 2 15 15 C 1.40618 * 107.59787 * 180.02562 * 14 13 11 16 16 C 1.41221 * 107.30365 * 359.97438 * 15 14 13 17 17 N 1.32981 * 119.35066 * 180.02562 * 16 15 14 18 18 C 1.33052 * 121.51343 * 359.97438 * 17 16 15 19 19 C 1.40899 * 119.03142 * 179.97438 * 18 17 16 20 20 C 1.36163 * 119.54871 * 180.02562 * 19 18 17 21 21 C 1.40297 * 119.62394 * 359.82211 * 20 19 18 22 22 C 1.35077 * 120.13791 * 0.43353 * 21 20 19 23 23 N 1.36462 * 120.77281 * 359.51669 * 22 21 20 24 24 C 1.35198 * 119.26344 * 180.25620 * 23 22 21 25 25 O 1.21850 * 120.72382 * 359.97438 * 24 23 22 26 26 N 1.36692 * 107.38059 * 0.02562 * 16 15 14 27 27 C 1.46494 * 125.59370 * 180.02562 * 26 16 15 28 28 H 1.09000 * 109.47384 * 235.59886 * 1 2 3 29 29 H 1.09007 * 109.46994 * 355.60274 * 1 2 3 30 30 H 1.08997 * 109.47048 * 115.59987 * 1 2 3 31 31 H 0.96996 * 120.00158 * 180.02562 * 6 5 3 32 32 H 1.07999 * 126.20507 * 0.02562 * 14 13 11 33 33 H 1.08002 * 120.22201 * 359.97438 * 19 18 17 34 34 H 1.07994 * 120.18995 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.92835 * 180.22997 * 21 20 19 36 36 H 1.08004 * 119.61105 * 179.79552 * 22 21 20 37 37 H 1.08998 * 109.47170 * 88.16420 * 27 26 16 38 38 H 1.08997 * 109.46996 * 208.16664 * 27 26 16 39 39 H 1.09006 * 109.46913 * 328.16732 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.0834 1.2692 0.5354 5 6 1.6421 2.2805 -0.6890 6 7 0.3600 2.5614 -0.6240 7 14 2.7828 3.3532 -1.7074 8 1 2.8508 2.8265 -3.0942 9 1 2.2638 4.7444 -1.7313 10 1 4.1407 3.3417 -1.1064 11 6 2.1388 -1.1673 -0.0005 12 8 3.3521 -1.1700 0.1058 13 6 1.4127 -2.4313 -0.1288 14 6 0.0558 -2.5743 -0.0913 15 6 -0.2322 -3.9415 -0.2497 16 6 1.0004 -4.6175 -0.3847 17 7 1.0055 -5.9370 -0.5497 18 6 -0.1252 -6.6371 -0.5904 19 6 -0.0588 -8.0333 -0.7681 20 6 -1.2094 -8.7601 -0.8118 21 6 -2.4455 -8.1106 -0.6757 22 6 -2.4932 -6.7708 -0.5110 23 7 -1.3468 -6.0318 -0.4647 24 6 -1.4298 -4.6933 -0.2936 25 8 -2.5127 -4.1460 -0.1817 26 7 1.9913 -3.6790 -0.3080 27 6 3.4285 -3.9470 -0.4009 28 1 -0.3634 -0.5806 0.8479 29 1 -0.3633 1.0247 0.0788 30 1 -0.3633 -0.4440 -0.9268 31 1 0.0060 3.3256 -1.1052 32 1 -0.6660 -1.7811 0.0368 33 1 0.8982 -8.5235 -0.8698 34 1 -1.1707 -9.8307 -0.9480 35 1 -3.3611 -8.6827 -0.7058 36 1 -3.4495 -6.2791 -0.4104 37 1 3.7367 -3.9180 -1.4460 38 1 3.9762 -3.1902 0.1606 39 1 3.6419 -4.9323 0.0136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439464079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:22 Heat of formation + Delta-G solvation = 70.204206 kcal Electronic energy + Delta-G solvation = -27230.871024 eV Core-core repulsion = 23334.426149 eV Total energy + Delta-G solvation = -3896.444875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.117 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.83736 -42.04584 -39.93984 -39.46418 -37.13656 -36.79320 -34.92121 -34.55415 -33.48027 -31.63595 -30.09637 -28.77403 -27.57575 -27.25463 -25.66332 -24.83112 -24.09629 -22.59095 -21.22683 -20.31529 -19.48165 -19.03486 -18.52007 -17.85366 -17.51144 -17.12773 -16.90129 -16.62329 -16.26840 -16.14093 -15.89186 -15.75146 -15.48078 -15.17924 -15.01768 -14.65074 -14.37308 -13.73901 -13.72058 -13.62490 -13.38995 -13.29334 -13.24075 -12.80978 -12.53069 -12.27776 -12.14232 -11.95360 -11.71216 -11.57619 -11.03897 -10.78735 -10.57931 -10.23999 -9.96698 -9.76977 -8.62677 -8.35550 -6.00347 -0.82084 -0.28458 0.41971 1.05019 1.06852 1.18302 1.36160 1.42835 1.53559 1.83450 2.19826 2.33662 2.73615 2.75883 2.91509 3.02188 3.21001 3.48508 3.59035 3.86429 3.94703 4.01154 4.15175 4.29635 4.30895 4.44154 4.54335 4.58774 4.68354 4.73277 4.75895 4.96974 4.98945 5.12181 5.18727 5.21287 5.43847 5.54874 5.60784 5.61510 5.92234 6.13266 6.45325 6.45443 6.66920 6.99890 7.25302 7.88960 8.34658 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.003335 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.129685 B = 8394.450086 C = 9310.270485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.428 5.428 3 C -0.384 4.384 4 H 0.076 0.924 5 C 0.043 3.957 6 N -0.833 5.833 7 Si 0.965 3.035 8 H -0.275 1.275 9 H -0.263 1.263 10 H -0.271 1.271 11 C 0.496 3.504 12 O -0.622 6.622 13 C -0.010 4.010 14 C -0.104 4.104 15 C -0.339 4.339 16 C 0.336 3.664 17 N -0.560 5.560 18 C 0.403 3.597 19 C -0.150 4.150 20 C -0.001 4.001 21 C -0.145 4.145 22 C 0.068 3.932 23 N -0.449 5.449 24 C 0.557 3.443 25 O -0.545 6.545 26 N -0.420 5.420 27 C 0.076 3.924 28 H 0.053 0.947 29 H 0.134 0.866 30 H 0.046 0.954 31 H 0.287 0.713 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.202 0.798 36 H 0.179 0.821 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 -25.437 -2.640 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.144 5.144 3 C -0.509 4.509 4 H 0.094 0.906 5 C -0.167 4.167 6 N -0.466 5.466 7 Si 0.787 3.213 8 H -0.201 1.201 9 H -0.188 1.188 10 H -0.196 1.196 11 C 0.288 3.712 12 O -0.512 6.512 13 C -0.118 4.118 14 C -0.130 4.130 15 C -0.350 4.350 16 C 0.101 3.899 17 N -0.291 5.291 18 C 0.156 3.844 19 C -0.171 4.171 20 C -0.025 4.025 21 C -0.166 4.166 22 C -0.052 4.052 23 N -0.155 5.155 24 C 0.359 3.641 25 O -0.424 6.424 26 N -0.101 5.101 27 C -0.064 4.064 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.195 0.805 33 H 0.200 0.800 34 H 0.220 0.780 35 H 0.219 0.781 36 H 0.196 0.804 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.806 -24.904 -2.612 25.949 hybrid contribution -0.023 1.611 -0.160 1.619 sum -6.828 -23.293 -2.772 24.431 Atomic orbital electron populations 1.23238 0.80519 1.08004 0.98574 1.43321 1.06298 1.04034 1.60746 1.19131 1.06782 0.89007 1.35989 0.90584 1.26082 0.97166 0.98291 0.95166 1.69690 1.15447 1.26811 1.34681 0.85429 0.79720 0.77138 0.78999 1.20108 1.18789 1.19573 1.16986 0.86453 0.82766 0.85042 1.90545 1.14630 1.87248 1.58788 1.19846 0.91972 0.85612 1.14419 1.21901 0.94007 0.95681 1.01402 1.19462 0.92561 0.96631 1.26334 1.18377 0.86397 0.88330 0.96770 1.67625 1.24994 1.03873 1.32586 1.20867 0.77567 0.95332 0.90622 1.21248 1.03584 0.85852 1.06459 1.22117 0.89621 1.03419 0.87327 1.21582 1.02084 0.91061 1.01912 1.22742 0.90160 0.94271 0.98045 1.43942 1.09087 1.09164 1.53315 1.16319 0.89176 0.80715 0.77843 1.90839 1.30196 1.69448 1.51945 1.43808 1.07054 1.03343 1.55912 1.22325 0.75508 1.04304 1.04222 0.92842 0.84858 0.93605 0.90134 0.80492 0.79961 0.77960 0.78086 0.80364 0.90312 0.89025 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.90 8.01 127.77 1.02 2.92 16 2 N -0.43 -23.81 3.01 -663.82 -2.00 -25.80 16 3 C -0.38 -22.34 8.89 84.09 0.75 -21.59 16 4 H 0.08 4.73 7.80 -2.91 -0.02 4.71 16 5 C 0.04 2.25 5.29 84.94 0.45 2.70 16 6 N -0.83 -42.76 10.54 21.67 0.23 -42.53 16 7 Si 0.96 42.17 29.69 68.60 2.04 44.21 16 8 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 C 0.50 27.20 7.56 86.35 0.65 27.86 16 12 O -0.62 -36.51 14.35 -4.65 -0.07 -36.58 16 13 C -0.01 -0.49 6.77 39.76 0.27 -0.22 16 14 C -0.10 -4.67 8.75 22.44 0.20 -4.48 16 15 C -0.34 -13.96 6.13 -21.17 -0.13 -14.09 16 16 C 0.34 13.02 7.93 134.18 1.06 14.08 16 17 N -0.56 -17.66 10.32 -189.99 -1.96 -19.62 16 18 C 0.40 9.79 7.34 134.00 0.98 10.78 16 19 C -0.15 -1.81 9.95 22.44 0.22 -1.58 16 20 C 0.00 0.00 10.07 22.29 0.22 0.22 16 21 C -0.15 -0.79 9.99 22.04 0.22 -0.57 16 22 C 0.07 1.10 10.07 83.24 0.84 1.93 16 23 N -0.45 -11.75 2.78 -476.80 -1.32 -13.07 16 24 C 0.56 20.23 7.41 84.97 0.63 20.86 16 25 O -0.54 -21.64 16.68 -4.83 -0.08 -21.72 16 26 N -0.42 -17.61 3.22 -532.02 -1.71 -19.32 16 27 C 0.08 2.69 10.72 127.77 1.37 4.06 16 28 H 0.05 2.42 6.16 -2.39 -0.01 2.41 16 29 H 0.13 6.85 4.76 -2.38 -0.01 6.84 16 30 H 0.05 2.15 6.77 -2.39 -0.02 2.13 16 31 H 0.29 13.38 8.31 -92.71 -0.77 12.61 16 32 H 0.18 7.78 3.90 -2.91 -0.01 7.77 16 33 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 34 H 0.20 -1.23 8.06 -2.91 -0.02 -1.25 16 35 H 0.20 -0.65 8.06 -2.91 -0.02 -0.67 16 36 H 0.18 2.75 7.32 -2.91 -0.02 2.73 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.09 3.68 6.01 -2.39 -0.01 3.67 16 39 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -81.19 328.25 5.02 -76.17 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.13 Total: 15.39 kcal Atomic # 6 Polarization: 34.11 SS G_CDS: 8.76 Total: 42.87 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.76 Total: -120.34 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -0.15 Total: -58.30 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.04 Total: 44.21 kcal Total: -81.19 5.02 -76.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439464079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.374 kcal (2) G-P(sol) polarization free energy of solvation -81.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds