Wall clock time and date at job start Fri Apr 10 2020 18:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46726 * 232.96346 * 3 2 1 5 5 C 1.37094 * 119.99513 * 82.56484 * 4 3 2 6 6 H 1.08000 * 119.99932 * 169.51148 * 5 4 3 7 7 C 1.38955 * 120.00369 * 349.50684 * 5 4 3 8 8 N 1.31411 * 119.99926 * 0.10014 * 7 5 4 9 9 Si 1.86792 * 119.99933 * 180.09405 * 7 5 4 10 10 H 1.48504 * 109.47014 * 90.00191 * 9 7 5 11 11 H 1.48502 * 109.47479 * 210.00117 * 9 7 5 12 12 H 1.48501 * 109.47627 * 330.00674 * 9 7 5 13 13 C 1.34776 * 120.00130 * 262.55472 * 4 3 2 14 14 O 1.21288 * 119.99804 * 184.25152 * 13 4 3 15 15 C 1.50702 * 119.99655 * 4.25987 * 13 4 3 16 16 C 1.50700 * 109.60289 * 298.03943 * 15 13 4 17 17 C 1.38235 * 119.99814 * 308.80036 * 16 15 13 18 18 C 1.38238 * 119.99770 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00365 * 0.09540 * 18 17 16 20 20 C 1.38238 * 119.99531 * 359.84069 * 19 18 17 21 21 C 1.38232 * 120.00150 * 128.77423 * 16 15 13 22 22 C 1.53340 * 109.60666 * 58.36606 * 15 13 4 23 23 C 1.53027 * 108.43926 * 52.53160 * 22 15 13 24 24 C 1.50184 * 110.00049 * 48.66065 * 23 22 15 25 25 O 1.21285 * 118.24234 * 162.55504 * 24 23 22 26 26 N 1.33349 * 123.50996 * 342.53023 * 24 23 22 27 27 C 1.45758 * 124.10390 * 2.20521 * 26 24 23 28 28 H 4.40643 * 5.51491 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.46878 * 112.96471 * 3 2 1 30 30 H 1.09001 * 109.47067 * 352.96678 * 3 2 1 31 31 H 0.96993 * 119.99903 * 179.97438 * 8 7 5 32 32 H 1.08004 * 120.00107 * 359.70126 * 17 16 15 33 33 H 1.08002 * 119.99674 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.00397 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99954 * 180.11843 * 20 19 18 36 36 H 1.07996 * 119.99645 * 359.97438 * 21 16 15 37 37 H 1.08997 * 109.67474 * 172.11660 * 22 15 13 38 38 H 1.08998 * 109.67206 * 292.65451 * 22 15 13 39 39 H 1.09000 * 109.25712 * 288.55617 * 23 22 15 40 40 H 1.09001 * 109.37204 * 168.83620 * 23 22 15 41 41 H 0.97002 * 117.95121 * 182.21966 * 26 24 23 42 42 H 1.08998 * 109.29684 * 220.63159 * 27 26 24 43 43 H 1.08993 * 109.13549 * 101.15222 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8328 1.1026 5 6 3.2177 0.3131 2.3684 6 1 3.7311 0.8615 3.1444 7 6 2.6421 -0.9191 2.6532 8 7 2.0190 -1.5872 1.7085 9 14 2.7540 -1.6259 4.3786 10 1 1.5847 -1.1747 5.1751 11 1 2.7612 -3.1092 4.3065 12 1 4.0050 -1.1557 5.0260 13 6 3.5006 2.1092 0.8725 14 8 3.9766 2.7743 1.7681 15 6 3.3188 2.7100 -0.4976 16 6 4.1489 1.9477 -1.4981 17 6 5.4904 1.7209 -1.2533 18 6 6.2517 1.0213 -2.1708 19 6 5.6722 0.5502 -3.3340 20 6 4.3304 0.7759 -3.5781 21 6 3.5689 1.4750 -2.6604 22 6 1.8400 2.6414 -0.8975 23 6 1.0061 3.2659 0.2234 24 6 1.5867 4.5940 0.6167 25 8 0.8897 5.3612 1.2463 26 7 2.8277 4.9745 0.3111 27 6 3.7568 4.1750 -0.4776 28 1 -1.0501 0.0000 -0.0003 29 1 3.0092 0.4018 -0.9462 30 1 3.0099 -1.0191 0.1258 31 1 1.6175 -2.4475 1.9072 32 1 5.9446 2.0941 -0.3473 33 1 7.2999 0.8444 -1.9797 34 1 6.2670 0.0039 -4.0510 35 1 3.8770 0.4062 -4.4860 36 1 2.5206 1.6515 -2.8512 37 1 1.6836 3.1977 -1.8216 38 1 1.5464 1.6015 -1.0403 39 1 1.0078 2.6001 1.0864 40 1 -0.0177 3.4067 -0.1232 41 1 3.1312 5.8373 0.6342 42 1 4.7535 4.2472 -0.0424 43 1 3.7806 4.5579 -1.4978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491727174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:55 Heat of formation + Delta-G solvation = 50.102872 kcal Electronic energy + Delta-G solvation = -29642.275720 eV Core-core repulsion = 25848.499529 eV Total energy + Delta-G solvation = -3793.776191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -41.17631 -39.01620 -38.10245 -35.92172 -35.31383 -33.31523 -31.86979 -31.45844 -31.14274 -30.71297 -28.15570 -26.59849 -25.12799 -24.40898 -23.26108 -21.97929 -21.31966 -20.21646 -18.06974 -17.81568 -17.47158 -16.60587 -16.34024 -16.00307 -15.65972 -15.35542 -14.86801 -14.48748 -14.29440 -14.23758 -14.07325 -13.60279 -13.44047 -13.26032 -13.04054 -12.97901 -12.57961 -12.37940 -12.07803 -11.79650 -11.50418 -11.23408 -11.21511 -11.10340 -10.87240 -10.69208 -10.51500 -10.47084 -10.35163 -9.61811 -9.28011 -9.25473 -8.85745 -8.80712 -8.73831 -8.60804 -8.20232 -7.97598 -6.29023 -3.93795 1.44841 1.54573 3.10146 3.12587 3.21208 3.25158 3.55073 3.72379 3.79774 3.91230 4.04419 4.12772 4.56689 4.75459 4.91344 4.95497 5.07572 5.10927 5.18488 5.20687 5.25010 5.45600 5.51645 5.62037 5.63859 5.68343 5.76569 5.87408 5.95594 6.09494 6.11978 6.19221 6.24426 6.40754 6.42452 6.60495 6.65316 6.75278 6.98549 7.11190 7.14400 7.15441 7.48648 7.73248 7.92186 8.35385 8.64570 8.80957 9.04654 9.28155 9.78408 10.60094 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.007038 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.773782 B = 3977.718012 C = 5226.818419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.088 4.088 3 C 0.206 3.794 4 N -0.430 5.430 5 C -0.303 4.303 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.874 5.874 9 Si 0.930 3.070 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.458 3.542 14 O -0.577 6.577 15 C -0.049 4.049 16 C -0.060 4.060 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.132 4.132 24 C 0.530 3.470 25 O -0.572 6.572 26 N -0.705 5.705 27 C 0.146 3.854 28 H 0.197 0.803 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.268 0.732 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.396 0.604 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 2.444 -12.816 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.090 4.090 3 C 0.084 3.916 4 N -0.146 5.146 5 C -0.430 4.430 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.514 5.514 9 Si 0.757 3.243 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.245 3.755 14 O -0.461 6.461 15 C -0.053 4.053 16 C -0.061 4.061 17 C -0.123 4.123 18 C -0.133 4.133 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.135 4.135 22 C -0.168 4.168 23 C -0.172 4.172 24 C 0.318 3.682 25 O -0.453 6.453 26 N -0.355 5.355 27 C 0.020 3.980 28 H 0.214 0.786 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.231 0.769 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.751 2.714 -12.094 12.950 hybrid contribution -0.160 -0.486 1.017 1.138 sum 3.590 2.228 -11.078 11.856 Atomic orbital electron populations 1.24255 0.95361 1.05931 1.04704 1.22990 0.94213 0.95460 0.96342 1.19267 0.84299 0.99324 0.88740 1.43611 1.54466 1.08315 1.08241 1.19796 1.33733 1.02549 0.86939 0.87687 1.25282 0.95648 0.96720 0.99588 1.69938 1.35227 1.14771 1.31500 0.85850 0.78943 0.77759 0.81744 1.20373 1.20837 1.19476 1.19380 0.85533 0.82353 0.88246 1.90556 1.49484 1.60450 1.45594 1.20033 0.95830 0.94752 0.94714 1.19417 0.93833 0.98418 0.94401 1.21084 0.93414 0.98460 0.99308 1.21094 0.99841 0.98166 0.94184 1.21114 0.95265 1.00320 0.97511 1.21077 0.94156 0.99152 0.99313 1.21146 1.00319 0.98509 0.93508 1.22258 0.92114 1.04616 0.97825 1.21585 1.00186 0.94114 1.01329 1.20105 0.81278 0.88708 0.78149 1.90687 1.58885 1.53948 1.41730 1.45145 1.13401 1.22027 1.54896 1.21084 0.93647 0.88442 0.94782 0.78611 0.90751 0.85539 0.92040 0.85754 0.86151 0.86361 0.86087 0.85402 0.90983 0.87450 0.87345 0.88465 0.76874 0.89781 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.51 19.07 29.55 0.56 -4.95 16 2 C -0.09 -1.84 7.72 -37.12 -0.29 -2.13 16 3 C 0.21 4.35 4.61 -6.83 -0.03 4.32 16 4 N -0.43 -10.09 2.60 -117.93 -0.31 -10.40 16 5 C -0.30 -7.97 9.49 -14.93 -0.14 -8.11 16 6 H 0.11 2.94 7.20 -52.49 -0.38 2.56 16 7 C 0.03 0.75 5.37 -17.47 -0.09 0.65 16 8 N -0.87 -21.66 8.01 55.50 0.44 -21.22 16 9 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.46 10.06 3.95 -10.98 -0.04 10.01 16 14 O -0.58 -14.59 15.12 5.55 0.08 -14.51 16 15 C -0.05 -0.83 0.35 -156.68 -0.05 -0.88 16 16 C -0.06 -0.89 2.95 -104.63 -0.31 -1.20 16 17 C -0.10 -1.54 9.04 -39.58 -0.36 -1.90 16 18 C -0.11 -1.43 10.05 -39.58 -0.40 -1.82 16 19 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 20 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.12 -1.50 7.40 -39.58 -0.29 -1.80 16 22 C -0.13 -2.08 2.98 -26.54 -0.08 -2.16 16 23 C -0.13 -2.43 5.26 -28.12 -0.15 -2.58 16 24 C 0.53 10.40 7.44 -11.87 -0.09 10.32 16 25 O -0.57 -13.02 17.78 5.55 0.10 -12.92 16 26 N -0.70 -11.83 5.03 -61.39 -0.31 -12.14 16 27 C 0.15 2.19 5.25 -4.48 -0.02 2.17 16 28 H 0.20 3.17 7.80 -54.08 -0.42 2.75 16 29 H 0.08 1.36 2.47 -51.93 -0.13 1.23 16 30 H 0.13 2.97 6.13 -51.93 -0.32 2.66 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.12 1.96 7.81 -52.48 -0.41 1.55 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.49 6.00 -52.49 -0.31 1.18 16 37 H 0.07 0.93 7.60 -51.93 -0.39 0.54 16 38 H 0.11 1.77 2.67 -51.93 -0.14 1.64 16 39 H 0.11 2.39 7.15 -51.93 -0.37 2.02 16 40 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.40 6.03 8.80 -40.82 -0.36 5.68 16 42 H 0.08 1.28 7.77 -51.93 -0.40 0.88 16 43 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -31.47 340.59 -7.34 -38.82 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -4.89 Total: 15.36 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.58 Total: -3.58 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.17 Total: -43.75 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: 0.18 Total: -27.43 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.47 -7.34 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491727174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.921 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds