Wall clock time and date at job start Fri Apr 10 2020 18:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46726 * 232.96346 * 3 2 1 5 5 C 1.37094 * 119.99513 * 82.56484 * 4 3 2 6 6 H 1.08000 * 119.99932 * 169.51148 * 5 4 3 7 7 C 1.38955 * 120.00369 * 349.50684 * 5 4 3 8 8 N 1.31411 * 119.99926 * 0.10014 * 7 5 4 9 9 Si 1.86792 * 119.99933 * 180.09405 * 7 5 4 10 10 H 1.48504 * 109.47014 * 90.00191 * 9 7 5 11 11 H 1.48502 * 109.47479 * 210.00117 * 9 7 5 12 12 H 1.48501 * 109.47627 * 330.00674 * 9 7 5 13 13 C 1.34776 * 120.00130 * 262.55472 * 4 3 2 14 14 O 1.21288 * 119.99804 * 184.25152 * 13 4 3 15 15 C 1.50702 * 119.99655 * 4.25987 * 13 4 3 16 16 C 1.50700 * 109.60289 * 298.03943 * 15 13 4 17 17 C 1.38235 * 119.99814 * 308.80036 * 16 15 13 18 18 C 1.38238 * 119.99770 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00365 * 0.09540 * 18 17 16 20 20 C 1.38238 * 119.99531 * 359.84069 * 19 18 17 21 21 C 1.38232 * 120.00150 * 128.77423 * 16 15 13 22 22 C 1.53340 * 109.60666 * 58.36606 * 15 13 4 23 23 C 1.53027 * 108.43926 * 52.53160 * 22 15 13 24 24 C 1.50184 * 110.00049 * 48.66065 * 23 22 15 25 25 O 1.21285 * 118.24234 * 162.55504 * 24 23 22 26 26 N 1.33349 * 123.50996 * 342.53023 * 24 23 22 27 27 C 1.45758 * 124.10390 * 2.20521 * 26 24 23 28 28 H 4.40643 * 5.51491 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.46878 * 112.96471 * 3 2 1 30 30 H 1.09001 * 109.47067 * 352.96678 * 3 2 1 31 31 H 0.96993 * 119.99903 * 179.97438 * 8 7 5 32 32 H 1.08004 * 120.00107 * 359.70126 * 17 16 15 33 33 H 1.08002 * 119.99674 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.00397 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99954 * 180.11843 * 20 19 18 36 36 H 1.07996 * 119.99645 * 359.97438 * 21 16 15 37 37 H 1.08997 * 109.67474 * 172.11660 * 22 15 13 38 38 H 1.08998 * 109.67206 * 292.65451 * 22 15 13 39 39 H 1.09000 * 109.25712 * 288.55617 * 23 22 15 40 40 H 1.09001 * 109.37204 * 168.83620 * 23 22 15 41 41 H 0.97002 * 117.95121 * 182.21966 * 26 24 23 42 42 H 1.08998 * 109.29684 * 220.63159 * 27 26 24 43 43 H 1.08993 * 109.13549 * 101.15222 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8328 1.1026 5 6 3.2177 0.3131 2.3684 6 1 3.7311 0.8615 3.1444 7 6 2.6421 -0.9191 2.6532 8 7 2.0190 -1.5872 1.7085 9 14 2.7540 -1.6259 4.3786 10 1 1.5847 -1.1747 5.1751 11 1 2.7612 -3.1092 4.3065 12 1 4.0050 -1.1557 5.0260 13 6 3.5006 2.1092 0.8725 14 8 3.9766 2.7743 1.7681 15 6 3.3188 2.7100 -0.4976 16 6 4.1489 1.9477 -1.4981 17 6 5.4904 1.7209 -1.2533 18 6 6.2517 1.0213 -2.1708 19 6 5.6722 0.5502 -3.3340 20 6 4.3304 0.7759 -3.5781 21 6 3.5689 1.4750 -2.6604 22 6 1.8400 2.6414 -0.8975 23 6 1.0061 3.2659 0.2234 24 6 1.5867 4.5940 0.6167 25 8 0.8897 5.3612 1.2463 26 7 2.8277 4.9745 0.3111 27 6 3.7568 4.1750 -0.4776 28 1 -1.0501 0.0000 -0.0003 29 1 3.0092 0.4018 -0.9462 30 1 3.0099 -1.0191 0.1258 31 1 1.6175 -2.4475 1.9072 32 1 5.9446 2.0941 -0.3473 33 1 7.2999 0.8444 -1.9797 34 1 6.2670 0.0039 -4.0510 35 1 3.8770 0.4062 -4.4860 36 1 2.5206 1.6515 -2.8512 37 1 1.6836 3.1977 -1.8216 38 1 1.5464 1.6015 -1.0403 39 1 1.0078 2.6001 1.0864 40 1 -0.0177 3.4067 -0.1232 41 1 3.1312 5.8373 0.6342 42 1 4.7535 4.2472 -0.0424 43 1 3.7806 4.5579 -1.4978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491727174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:48 Heat of formation + Delta-G solvation = 30.216898 kcal Electronic energy + Delta-G solvation = -29643.138040 eV Core-core repulsion = 25848.499529 eV Total energy + Delta-G solvation = -3794.638511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -42.58300 -40.42023 -39.50285 -37.52353 -36.97350 -34.80376 -33.38519 -33.19938 -32.52364 -31.71884 -29.38295 -28.32676 -26.82322 -25.73638 -24.63460 -23.07096 -22.53608 -21.73686 -19.71866 -19.43015 -18.76300 -18.27025 -17.70650 -17.37899 -17.09633 -16.84164 -16.44745 -16.01753 -15.75798 -15.48915 -15.43246 -15.04605 -14.81485 -14.63290 -14.41924 -14.21762 -14.15282 -13.74080 -13.51932 -13.19161 -13.08897 -12.94894 -12.67119 -12.47621 -12.38787 -12.21599 -12.15126 -11.83875 -11.64167 -11.37703 -10.91490 -10.82436 -10.42209 -10.36773 -10.08338 -9.87807 -9.69391 -9.43357 -8.18222 -5.91137 0.44620 0.57316 1.31746 1.37581 1.47239 1.57622 1.90761 2.12571 2.32279 2.36702 2.48989 2.88909 3.08190 3.11166 3.44961 3.62600 3.67140 3.79520 3.96252 4.10299 4.18263 4.21515 4.28322 4.36072 4.42669 4.57137 4.63105 4.72017 4.74394 4.78377 4.83311 4.99120 5.06558 5.11899 5.23132 5.28187 5.45609 5.56239 5.65301 5.71088 5.71291 5.79383 6.03951 6.17023 6.29332 6.47328 7.14972 7.16286 7.24083 7.46772 7.98732 8.65698 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.007038 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.773782 B = 3977.718012 C = 5226.818419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.121 4.121 3 C 0.214 3.786 4 N -0.442 5.442 5 C -0.338 4.338 6 H 0.072 0.928 7 C 0.004 3.996 8 N -0.874 5.874 9 Si 0.980 3.020 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.277 1.277 13 C 0.456 3.544 14 O -0.623 6.623 15 C -0.041 4.041 16 C -0.077 4.077 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.128 4.128 24 C 0.522 3.478 25 O -0.613 6.613 26 N -0.696 5.696 27 C 0.142 3.858 28 H 0.227 0.773 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.270 0.730 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.403 0.597 42 H 0.078 0.922 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 1.642 -16.264 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.123 4.123 3 C 0.092 3.908 4 N -0.158 5.158 5 C -0.466 4.466 6 H 0.090 0.910 7 C -0.198 4.198 8 N -0.513 5.513 9 Si 0.805 3.195 10 H -0.209 1.209 11 H -0.192 1.192 12 H -0.202 1.202 13 C 0.246 3.754 14 O -0.510 6.510 15 C -0.045 4.045 16 C -0.078 4.078 17 C -0.144 4.144 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.161 4.161 23 C -0.168 4.168 24 C 0.310 3.690 25 O -0.496 6.496 26 N -0.345 5.345 27 C 0.018 3.982 28 H 0.243 0.757 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.239 0.761 42 H 0.096 0.904 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.418 1.885 -15.590 16.071 hybrid contribution 0.036 -0.241 2.054 2.068 sum 3.454 1.645 -13.536 14.066 Atomic orbital electron populations 1.24998 0.96179 1.04361 1.03162 1.23110 0.94588 0.96853 0.97718 1.19181 0.84821 0.97633 0.89133 1.43717 1.54954 1.09273 1.07870 1.19607 1.35394 1.03498 0.88078 0.91007 1.25804 0.95211 0.96486 1.02314 1.70078 1.34615 1.14588 1.32028 0.85131 0.78164 0.77813 0.78425 1.20889 1.19158 1.20163 1.20316 0.83358 0.81655 0.90094 1.90513 1.51021 1.61503 1.47917 1.19926 0.97248 0.95447 0.91840 1.19264 0.93588 0.99893 0.95060 1.21033 0.94005 1.00033 0.99310 1.21329 1.00598 0.97595 0.94274 1.21521 0.95703 0.99157 0.97119 1.21491 0.94065 0.97701 0.99842 1.21352 1.01279 0.98297 0.92840 1.22296 0.90536 1.04874 0.98418 1.21520 1.01991 0.92627 1.00645 1.20385 0.81863 0.88874 0.77867 1.90658 1.60171 1.55159 1.43643 1.45165 1.12739 1.22382 1.54180 1.21332 0.92657 0.87542 0.96629 0.75674 0.87754 0.88303 0.91953 0.88333 0.84651 0.83248 0.82805 0.83755 0.86741 0.87691 0.91540 0.86466 0.76137 0.90393 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -9.98 19.07 74.32 1.42 -8.56 16 2 C -0.12 -4.96 7.72 31.13 0.24 -4.72 16 3 C 0.21 9.08 4.61 84.57 0.39 9.47 16 4 N -0.44 -21.54 2.60 -645.41 -1.68 -23.22 16 5 C -0.34 -18.74 9.49 84.04 0.80 -17.95 16 6 H 0.07 4.35 7.20 -2.91 -0.02 4.33 16 7 C 0.00 0.18 5.37 84.93 0.46 0.64 16 8 N -0.87 -43.66 8.01 21.66 0.17 -43.49 16 9 Si 0.98 42.96 29.55 68.60 2.03 44.98 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.46 20.82 3.95 87.66 0.35 21.16 16 14 O -0.62 -33.41 15.12 -3.06 -0.05 -33.46 16 15 C -0.04 -1.34 0.35 -53.59 -0.02 -1.36 16 16 C -0.08 -2.16 2.95 -19.87 -0.06 -2.22 16 17 C -0.13 -3.63 9.04 22.27 0.20 -3.43 16 18 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 19 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 20 C -0.11 -2.04 10.05 22.27 0.22 -1.82 16 21 C -0.12 -2.64 7.40 22.27 0.16 -2.48 16 22 C -0.12 -3.69 2.98 30.72 0.09 -3.60 16 23 C -0.13 -4.65 5.26 29.70 0.16 -4.49 16 24 C 0.52 20.59 7.44 87.72 0.65 21.24 16 25 O -0.61 -28.42 17.78 -3.04 -0.05 -28.48 16 26 N -0.70 -23.17 5.03 -467.31 -2.35 -25.52 16 27 C 0.14 4.14 5.25 86.49 0.45 4.59 16 28 H 0.23 6.65 7.80 -4.41 -0.03 6.62 16 29 H 0.11 3.72 2.47 -2.39 -0.01 3.71 16 30 H 0.10 4.73 6.13 -2.39 -0.01 4.71 16 31 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 32 H 0.10 3.29 7.81 -2.91 -0.02 3.26 16 33 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.14 2.68 6.00 -2.91 -0.02 2.67 16 37 H 0.11 2.47 7.60 -2.39 -0.02 2.45 16 38 H 0.11 3.24 2.67 -2.39 -0.01 3.24 16 39 H 0.07 3.02 7.15 -2.39 -0.02 3.01 16 40 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.40 12.27 8.80 -92.71 -0.82 11.45 16 42 H 0.08 2.39 7.77 -2.39 -0.02 2.37 16 43 H 0.11 2.30 8.11 -2.39 -0.02 2.28 16 Total: -1.00 -73.09 340.59 4.28 -68.81 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.25 Total: 38.34 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.96 Total: 2.02 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -3.86 Total: -92.22 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -0.10 Total: -61.94 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.09 4.28 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491727174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.032 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds