Wall clock time and date at job start Fri Apr 10 2020 18:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99688 * 2 1 4 4 H 1.48504 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47068 * 299.99317 * 3 2 1 6 6 H 1.48496 * 109.47182 * 59.99755 * 3 2 1 7 7 C 1.38948 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00215 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00007 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00255 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47136 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99719 * 179.97438 * 13 12 10 15 15 O 1.21589 * 120.00290 * 4.99136 * 14 13 12 16 16 N 1.34773 * 120.00006 * 184.98438 * 14 13 12 17 17 C 1.46982 * 120.68744 * 174.78350 * 16 14 13 18 18 C 1.53289 * 108.59446 * 124.56462 * 17 16 14 19 19 N 1.47561 * 108.60857 * 50.05813 * 18 17 16 20 20 C 1.34189 * 118.33443 * 125.02893 * 19 18 17 21 21 O 1.21510 * 118.94089 * 357.22999 * 20 19 18 22 22 O 1.34391 * 122.12045 * 177.19835 * 20 19 18 23 23 C 1.45650 * 115.55213 * 335.35470 * 22 20 19 24 24 C 1.54167 * 107.47686 * 54.75502 * 23 22 20 25 25 C 1.45995 * 118.42537 * 304.64752 * 19 18 17 26 26 H 1.09006 * 108.72561 * 296.33746 * 25 19 18 27 27 C 1.46954 * 120.68307 * 354.81063 * 16 14 13 28 28 H 0.96999 * 120.00613 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99977 * 359.97438 * 9 7 2 30 30 H 1.08991 * 109.47408 * 59.99010 * 12 10 9 31 31 H 1.09000 * 109.46591 * 299.99204 * 12 10 9 32 32 H 0.97003 * 120.00052 * 359.97438 * 13 12 10 33 33 H 1.09004 * 109.61253 * 4.83795 * 17 16 14 34 34 H 1.08993 * 109.76989 * 244.38602 * 17 16 14 35 35 H 1.08998 * 109.61200 * 290.31605 * 18 17 16 36 36 H 1.09002 * 109.60826 * 169.79219 * 18 17 16 37 37 H 1.09000 * 109.75699 * 173.84480 * 23 22 20 38 38 H 1.08993 * 109.76162 * 294.55306 * 23 22 20 39 39 H 1.08996 * 109.28057 * 180.91384 * 24 23 22 40 40 H 1.08997 * 109.97874 * 61.13677 * 24 23 22 41 41 H 1.09005 * 109.60515 * 114.88241 * 27 16 14 42 42 H 1.08998 * 109.59940 * 354.40617 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1960 -5.9764 -0.0005 14 6 1.7467 -7.2471 -0.0006 15 8 0.5551 -7.4707 -0.0918 16 7 2.6184 -8.2700 0.1004 17 6 2.1397 -9.6548 0.2166 18 6 2.7744 -10.4870 -0.9034 19 7 4.2303 -10.2463 -0.9016 20 6 5.0506 -11.3042 -0.8082 21 8 4.5689 -12.4120 -0.6776 22 8 6.3877 -11.1778 -0.8550 23 6 6.8832 -9.9952 -1.5458 24 6 6.2212 -8.7658 -0.8922 25 6 4.7074 -8.8708 -1.0100 26 1 4.4029 -8.4699 -1.9768 27 6 4.0672 -8.0238 0.0971 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6175 -4.9205 -0.8901 31 1 0.6171 -4.9209 0.8898 32 1 3.1497 -5.7991 -0.0008 33 1 1.0543 -9.6762 0.1181 34 1 2.4274 -10.0644 1.1848 35 1 2.3552 -10.1879 -1.8640 36 1 2.5783 -11.5450 -0.7291 37 1 7.9655 -9.9296 -1.4341 38 1 6.6247 -10.0507 -2.6032 39 1 6.5602 -7.8624 -1.3992 40 1 6.4976 -8.7097 0.1606 41 1 4.4882 -8.3052 1.0624 42 1 4.2581 -6.9678 -0.0937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496509870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:28 Heat of formation + Delta-G solvation = -119.148645 kcal Electronic energy + Delta-G solvation = -28051.538363 eV Core-core repulsion = 23839.573612 eV Total energy + Delta-G solvation = -4211.964751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.63506 -40.16722 -38.43470 -37.63134 -37.55053 -34.65180 -34.40929 -33.88943 -33.10354 -31.44374 -30.25810 -28.46449 -27.10131 -25.23216 -24.56361 -23.39863 -22.78993 -20.11389 -19.93886 -19.76690 -18.90645 -18.14062 -17.56000 -17.42425 -16.62352 -16.43490 -15.75266 -15.67215 -15.48840 -15.05555 -14.83739 -14.62423 -14.59442 -14.44541 -14.06110 -13.95529 -13.54227 -13.47393 -12.78344 -12.58397 -12.48492 -12.28292 -12.00514 -11.90163 -11.72879 -11.68993 -11.59484 -11.19400 -11.04265 -10.58504 -10.46126 -10.38412 -10.12173 -9.70820 -9.65021 -9.00227 -8.70554 -8.54058 -8.16431 -6.57259 -3.99573 2.01637 2.29053 2.58274 3.05385 3.07315 3.18353 3.18934 3.24431 3.67543 3.72407 3.96520 4.02997 4.10244 4.29366 4.40816 4.56048 4.72544 4.72944 4.79946 4.85701 4.92891 5.03533 5.11564 5.22874 5.26976 5.38487 5.43625 5.61690 5.73256 5.82566 5.92255 5.99992 6.01848 6.22253 6.61387 6.82736 7.30156 7.40411 7.70996 7.86128 7.97787 8.38126 8.60236 8.98517 9.32989 9.80160 10.59565 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.002466 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.975188 B =11353.310478 C =12396.256010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.428 3.572 11 O -0.601 6.601 12 C 0.127 3.873 13 N -0.723 5.723 14 C 0.710 3.290 15 O -0.590 6.590 16 N -0.633 5.633 17 C 0.117 3.883 18 C 0.105 3.895 19 N -0.614 5.614 20 C 0.655 3.345 21 O -0.532 6.532 22 O -0.344 6.344 23 C 0.063 3.937 24 C -0.167 4.167 25 C 0.124 3.876 26 H 0.088 0.912 27 C 0.102 3.898 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.405 0.595 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 -16.687 -2.536 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.214 3.786 11 O -0.488 6.488 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.411 3.589 15 O -0.468 6.468 16 N -0.371 5.371 17 C -0.007 4.007 18 C -0.017 4.017 19 N -0.360 5.360 20 C 0.409 3.591 21 O -0.417 6.417 22 O -0.255 6.255 23 C -0.012 4.012 24 C -0.206 4.206 25 C 0.019 3.981 26 H 0.106 0.894 27 C -0.023 4.023 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.281 -17.328 -2.436 19.808 hybrid contribution 0.266 1.344 -0.060 1.371 sum 9.547 -15.984 -2.495 18.785 Atomic orbital electron populations 1.69616 1.06034 1.28516 1.49155 1.25337 0.95666 0.99980 0.96723 0.85758 0.79654 0.80797 0.77876 1.19130 1.20584 1.20585 1.19768 0.93467 0.81944 1.48293 0.87610 1.41796 1.09536 1.04473 1.62386 1.19725 0.88266 0.84973 0.85679 1.90477 1.13745 1.86874 1.57664 1.20821 0.91222 0.84846 1.03274 1.44954 1.11273 1.03334 1.78723 1.15731 0.84778 0.80532 0.77845 1.90911 1.14040 1.83771 1.58057 1.47130 1.05068 1.06163 1.78778 1.21844 1.01506 0.79273 0.98112 1.22262 0.77028 1.02569 0.99858 1.47529 1.07614 1.05284 1.75607 1.17996 0.80231 0.84398 0.76474 1.90975 1.72121 1.24129 1.54493 1.86919 1.19927 1.45783 1.72907 1.23599 1.00477 0.81345 0.95750 1.22514 0.93158 1.00422 1.04466 1.21286 0.94338 0.81775 1.00670 0.89384 1.22137 0.80955 1.00551 0.98660 0.91567 0.76986 0.89844 0.89969 0.75500 0.87053 0.90985 0.90319 0.86891 0.86266 0.90270 0.87211 0.88901 0.90426 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.28 13.05 55.50 0.72 -22.55 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 19.92 29.55 -169.99 -5.02 14.89 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.01 9.68 -14.93 -0.14 -8.16 16 8 H 0.11 2.89 7.16 -52.48 -0.38 2.51 16 9 N -0.55 -13.06 5.29 -10.96 -0.06 -13.11 16 10 C 0.43 9.31 7.85 -10.99 -0.09 9.23 16 11 O -0.60 -14.44 15.24 5.54 0.08 -14.36 16 12 C 0.13 2.22 6.16 -5.19 -0.03 2.19 16 13 N -0.72 -11.29 5.44 -66.42 -0.36 -11.65 16 14 C 0.71 10.75 8.30 -86.92 -0.72 10.03 16 15 O -0.59 -10.77 15.77 5.29 0.08 -10.69 16 16 N -0.63 -7.23 2.95 -178.25 -0.53 -7.76 16 17 C 0.12 1.17 6.59 -3.63 -0.02 1.14 16 18 C 0.11 0.97 6.51 -3.31 -0.02 0.95 16 19 N -0.61 -5.76 2.94 -171.70 -0.50 -6.26 16 20 C 0.65 7.68 8.29 53.79 0.45 8.12 16 21 O -0.53 -8.08 16.25 -19.36 -0.31 -8.39 16 22 O -0.34 -3.51 10.56 -39.72 -0.42 -3.93 16 23 C 0.06 0.34 7.21 37.77 0.27 0.61 16 24 C -0.17 -0.81 5.69 -26.53 -0.15 -0.96 16 25 C 0.12 0.91 3.21 -68.41 -0.22 0.69 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 C 0.10 0.88 5.75 -3.59 -0.02 0.86 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.40 9.13 7.90 -40.82 -0.32 8.80 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.40 6.02 4.92 -40.82 -0.20 5.82 16 33 H 0.11 1.21 7.00 -51.93 -0.36 0.84 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.07 6.73 -51.93 -0.35 0.73 16 37 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.44 7.72 -51.93 -0.40 0.04 16 41 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 42 H 0.10 0.87 5.63 -51.93 -0.29 0.57 16 LS Contribution 347.50 15.07 5.24 5.24 Total: -1.00 -34.08 347.50 -7.11 -41.19 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.23 Total: 12.12 kcal Atomic # 6 Polarization: 26.06 SS G_CDS: -0.80 Total: 25.26 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.73 Total: -61.34 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.57 Total: -37.37 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.08 -7.11 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496509870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.959 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds