Wall clock time and date at job start Fri Apr 10 2020 18:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99688 * 2 1 4 4 H 1.48504 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47068 * 299.99317 * 3 2 1 6 6 H 1.48496 * 109.47182 * 59.99755 * 3 2 1 7 7 C 1.38948 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00215 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00007 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00255 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47136 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99719 * 179.97438 * 13 12 10 15 15 O 1.21589 * 120.00290 * 4.99136 * 14 13 12 16 16 N 1.34773 * 120.00006 * 184.98438 * 14 13 12 17 17 C 1.46982 * 120.68744 * 174.78350 * 16 14 13 18 18 C 1.53289 * 108.59446 * 124.56462 * 17 16 14 19 19 N 1.47561 * 108.60857 * 50.05813 * 18 17 16 20 20 C 1.34189 * 118.33443 * 125.02893 * 19 18 17 21 21 O 1.21510 * 118.94089 * 357.22999 * 20 19 18 22 22 O 1.34391 * 122.12045 * 177.19835 * 20 19 18 23 23 C 1.45650 * 115.55213 * 335.35470 * 22 20 19 24 24 C 1.54167 * 107.47686 * 54.75502 * 23 22 20 25 25 C 1.45995 * 118.42537 * 304.64752 * 19 18 17 26 26 H 1.09006 * 108.72561 * 296.33746 * 25 19 18 27 27 C 1.46954 * 120.68307 * 354.81063 * 16 14 13 28 28 H 0.96999 * 120.00613 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99977 * 359.97438 * 9 7 2 30 30 H 1.08991 * 109.47408 * 59.99010 * 12 10 9 31 31 H 1.09000 * 109.46591 * 299.99204 * 12 10 9 32 32 H 0.97003 * 120.00052 * 359.97438 * 13 12 10 33 33 H 1.09004 * 109.61253 * 4.83795 * 17 16 14 34 34 H 1.08993 * 109.76989 * 244.38602 * 17 16 14 35 35 H 1.08998 * 109.61200 * 290.31605 * 18 17 16 36 36 H 1.09002 * 109.60826 * 169.79219 * 18 17 16 37 37 H 1.09000 * 109.75699 * 173.84480 * 23 22 20 38 38 H 1.08993 * 109.76162 * 294.55306 * 23 22 20 39 39 H 1.08996 * 109.28057 * 180.91384 * 24 23 22 40 40 H 1.08997 * 109.97874 * 61.13677 * 24 23 22 41 41 H 1.09005 * 109.60515 * 114.88241 * 27 16 14 42 42 H 1.08998 * 109.59940 * 354.40617 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1960 -5.9764 -0.0005 14 6 1.7467 -7.2471 -0.0006 15 8 0.5551 -7.4707 -0.0918 16 7 2.6184 -8.2700 0.1004 17 6 2.1397 -9.6548 0.2166 18 6 2.7744 -10.4870 -0.9034 19 7 4.2303 -10.2463 -0.9016 20 6 5.0506 -11.3042 -0.8082 21 8 4.5689 -12.4120 -0.6776 22 8 6.3877 -11.1778 -0.8550 23 6 6.8832 -9.9952 -1.5458 24 6 6.2212 -8.7658 -0.8922 25 6 4.7074 -8.8708 -1.0100 26 1 4.4029 -8.4699 -1.9768 27 6 4.0672 -8.0238 0.0971 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6175 -4.9205 -0.8901 31 1 0.6171 -4.9209 0.8898 32 1 3.1497 -5.7991 -0.0008 33 1 1.0543 -9.6762 0.1181 34 1 2.4274 -10.0644 1.1848 35 1 2.3552 -10.1879 -1.8640 36 1 2.5783 -11.5450 -0.7291 37 1 7.9655 -9.9296 -1.4341 38 1 6.6247 -10.0507 -2.6032 39 1 6.5602 -7.8624 -1.3992 40 1 6.4976 -8.7097 0.1606 41 1 4.4882 -8.3052 1.0624 42 1 4.2581 -6.9678 -0.0937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496509870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:26 Heat of formation + Delta-G solvation = -145.162750 kcal Electronic energy + Delta-G solvation = -28052.666419 eV Core-core repulsion = 23839.573612 eV Total energy + Delta-G solvation = -4213.092807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.42806 -41.30894 -40.09218 -38.54515 -38.44213 -36.27264 -35.50102 -35.24859 -33.91069 -33.34151 -30.98611 -29.57193 -28.31396 -26.39265 -25.81883 -24.17873 -23.67273 -21.39814 -21.10550 -20.67036 -20.19056 -19.76086 -18.53022 -18.24268 -17.54652 -17.43722 -17.28587 -16.89441 -16.51115 -16.30453 -16.00353 -15.88187 -15.66370 -15.39882 -15.31902 -15.03841 -14.74836 -14.43830 -13.98167 -13.62571 -13.53171 -13.43041 -13.23404 -13.08938 -12.90240 -12.68399 -12.42543 -12.40630 -12.32852 -12.09548 -11.68768 -11.55947 -11.45358 -11.28426 -10.57462 -10.53229 -10.22563 -10.07136 -9.48015 -8.49434 -5.99299 1.18473 1.36705 1.43588 1.45632 1.57757 1.62774 1.90691 2.02477 2.28653 2.44077 2.71934 3.15135 3.18390 3.38198 3.47916 3.68895 3.85332 3.94866 4.10974 4.13460 4.20970 4.22644 4.27535 4.44823 4.47706 4.52704 4.61677 4.63167 4.71545 4.84053 4.97471 5.07137 5.27666 5.28670 5.34650 5.40742 5.76610 5.94099 6.49345 6.54808 6.81921 6.86590 7.05434 7.38698 7.48215 7.95808 8.67677 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.002466 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.975188 B =11353.310478 C =12396.256010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.089 0.911 9 N -0.560 5.560 10 C 0.436 3.564 11 O -0.622 6.622 12 C 0.140 3.860 13 N -0.722 5.722 14 C 0.710 3.290 15 O -0.623 6.623 16 N -0.627 5.627 17 C 0.119 3.881 18 C 0.110 3.890 19 N -0.608 5.608 20 C 0.655 3.345 21 O -0.577 6.577 22 O -0.360 6.360 23 C 0.057 3.943 24 C -0.162 4.162 25 C 0.124 3.876 26 H 0.094 0.906 27 C 0.099 3.901 28 H 0.279 0.721 29 H 0.398 0.602 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.410 0.590 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.935 -16.188 -2.820 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.107 0.893 9 N -0.196 5.196 10 C 0.223 3.777 11 O -0.510 6.510 12 C 0.011 3.989 13 N -0.382 5.382 14 C 0.412 3.588 15 O -0.504 6.504 16 N -0.364 5.364 17 C -0.004 4.004 18 C -0.012 4.012 19 N -0.353 5.353 20 C 0.410 3.590 21 O -0.466 6.466 22 O -0.272 6.272 23 C -0.016 4.016 24 C -0.199 4.199 25 C 0.020 3.980 26 H 0.112 0.888 27 C -0.025 4.025 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.250 0.750 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.165 0.835 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.742 -16.834 -2.725 20.154 hybrid contribution -0.109 1.132 0.022 1.137 sum 10.633 -15.702 -2.703 19.155 Atomic orbital electron populations 1.69683 1.07049 1.29525 1.49503 1.26118 0.96491 1.02701 0.95914 0.84824 0.78269 0.76823 0.78160 1.19180 1.19817 1.19889 1.19770 0.92990 0.83425 1.50072 0.89343 1.41849 1.09622 1.04641 1.63440 1.20359 0.88126 0.85776 0.83467 1.90456 1.14977 1.87529 1.58008 1.20610 0.91031 0.83113 1.04121 1.44841 1.11111 1.03134 1.79108 1.15787 0.84699 0.80755 0.77607 1.90891 1.15675 1.84250 1.59598 1.47165 1.05964 1.05744 1.77485 1.21882 1.01126 0.78553 0.98836 1.22186 0.77136 1.02157 0.99728 1.47560 1.07341 1.05754 1.74645 1.18081 0.80794 0.84169 0.75952 1.90937 1.73207 1.25869 1.56542 1.86890 1.18845 1.48160 1.73266 1.24003 1.01966 0.79777 0.95895 1.22551 0.90907 1.01288 1.05198 1.21459 0.96125 0.80134 1.00328 0.88764 1.22341 0.79128 1.01120 0.99864 0.91147 0.76750 0.88978 0.89080 0.74952 0.87910 0.90203 0.89792 0.87281 0.83503 0.89337 0.84538 0.88452 0.89342 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.54 13.05 21.66 0.28 -47.26 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 40.31 29.55 68.60 2.03 42.34 16 4 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.33 -17.58 9.68 84.04 0.81 -16.77 16 8 H 0.09 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.56 -26.81 5.29 -306.98 -1.62 -28.43 16 10 C 0.44 18.78 7.85 87.66 0.69 19.47 16 11 O -0.62 -29.58 15.24 -3.09 -0.05 -29.62 16 12 C 0.14 4.77 6.16 85.63 0.53 5.30 16 13 N -0.72 -21.59 5.44 -482.30 -2.62 -24.21 16 14 C 0.71 20.71 8.30 179.06 1.49 22.20 16 15 O -0.62 -22.38 15.77 -4.00 -0.06 -22.44 16 16 N -0.63 -13.43 2.95 -836.11 -2.47 -15.90 16 17 C 0.12 2.29 6.59 86.38 0.57 2.86 16 18 C 0.11 1.95 6.51 86.27 0.56 2.51 16 19 N -0.61 -10.57 2.94 -928.32 -2.73 -13.29 16 20 C 0.66 14.85 8.29 129.88 1.08 15.93 16 21 O -0.58 -17.68 16.25 19.89 0.32 -17.36 16 22 O -0.36 -6.82 10.56 -52.95 -0.56 -7.38 16 23 C 0.06 0.45 7.21 72.38 0.52 0.97 16 24 C -0.16 -1.05 5.69 30.73 0.17 -0.87 16 25 C 0.12 1.52 3.21 44.96 0.14 1.66 16 26 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 27 C 0.10 1.50 5.75 86.43 0.50 1.99 16 28 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.40 18.47 7.90 -92.71 -0.73 17.73 16 30 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 31 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.41 11.53 4.92 -92.71 -0.46 11.08 16 33 H 0.10 2.20 7.00 -2.38 -0.02 2.18 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.11 2.08 6.73 -2.39 -0.02 2.06 16 37 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.10 0.60 7.72 -2.39 -0.02 0.59 16 41 H 0.09 1.20 7.91 -2.38 -0.02 1.18 16 42 H 0.10 1.55 5.63 -2.39 -0.01 1.53 16 Total: -1.00 -73.44 347.50 -0.05 -73.49 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.10 Total: 34.94 kcal Atomic # 6 Polarization: 47.60 SS G_CDS: 7.53 Total: 55.13 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -9.16 Total: -129.09 kcal Atomic # 8 Polarization: -76.46 SS G_CDS: -0.35 Total: -76.80 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -73.44 -0.05 -73.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496509870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.677 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds