Wall clock time and date at job start Fri Apr 10 2020 18:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86793 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47373 * 269.99872 * 3 2 1 5 5 H 1.48504 * 109.47030 * 30.00198 * 3 2 1 6 6 H 1.48500 * 109.46908 * 149.99936 * 3 2 1 7 7 C 1.38950 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00069 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99928 * 180.02562 * 7 2 1 10 10 C 1.34779 * 120.00148 * 179.97438 * 9 7 2 11 11 O 1.21284 * 119.99849 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99762 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34775 * 120.00516 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99653 * 5.06206 * 14 13 12 16 16 N 1.34775 * 119.99971 * 184.78611 * 14 13 12 17 17 C 1.46983 * 120.68612 * 175.21575 * 16 14 13 18 18 C 1.53269 * 108.59792 * 235.48084 * 17 16 14 19 19 N 1.47563 * 108.62434 * 309.95763 * 18 17 16 20 20 C 1.34205 * 118.31795 * 235.12357 * 19 18 17 21 21 O 1.21502 * 118.95111 * 2.55651 * 20 19 18 22 22 O 1.34394 * 122.10172 * 182.52785 * 20 19 18 23 23 C 1.45658 * 115.52140 * 24.83533 * 22 20 19 24 24 C 1.52958 * 107.97590 * 305.64875 * 23 22 20 25 25 C 1.45989 * 118.44506 * 55.29794 * 19 18 17 26 26 H 1.09004 * 108.72191 * 62.80583 * 25 19 18 27 27 C 1.46945 * 120.69021 * 354.94492 * 16 14 13 28 28 H 0.96990 * 119.99904 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99919 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47613 * 60.00155 * 12 10 9 31 31 H 1.09004 * 109.47528 * 299.99898 * 12 10 9 32 32 H 0.97011 * 119.99532 * 0.02562 * 13 12 10 33 33 H 1.08998 * 109.61702 * 355.21542 * 17 16 14 34 34 H 1.08999 * 109.61476 * 115.56432 * 17 16 14 35 35 H 1.08997 * 109.61474 * 69.70020 * 18 17 16 36 36 H 1.09004 * 109.61067 * 190.21866 * 18 17 16 37 37 H 1.08998 * 109.75904 * 65.27131 * 23 22 20 38 38 H 1.09003 * 109.76098 * 186.02900 * 23 22 20 39 39 H 1.08994 * 109.26954 * 178.24391 * 24 23 22 40 40 H 1.09003 * 109.26909 * 297.72229 * 24 23 22 41 41 H 1.09007 * 109.59503 * 245.08007 * 27 16 14 42 42 H 1.08992 * 109.60055 * 5.54944 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3705 0.0000 13 7 6.0492 -3.7517 0.0006 14 6 7.3742 -3.9980 0.0002 15 8 8.1636 -3.0778 0.0922 16 7 7.8242 -5.2647 -0.0966 17 6 9.2633 -5.5435 -0.2038 18 6 9.5068 -6.3792 -1.4653 19 7 8.5703 -7.5196 -1.4631 20 6 9.0754 -8.7584 -1.5698 21 8 10.2813 -8.8998 -1.6166 22 8 8.2900 -9.8475 -1.6259 23 6 6.9391 -9.6222 -2.1218 24 6 6.3050 -8.5152 -1.2780 25 6 7.1409 -7.2454 -1.3490 26 1 6.8253 -6.6667 -2.2172 27 6 6.8865 -6.3961 -0.0913 28 1 -0.4849 0.8400 -0.0004 29 1 3.8649 -0.3633 0.0004 30 1 5.9242 -1.8567 0.8900 31 1 5.9242 -1.8566 -0.8900 32 1 5.4188 -4.4890 0.0006 33 1 9.8135 -4.6052 -0.2746 34 1 9.5953 -6.0968 0.6747 35 1 9.3341 -5.7657 -2.3496 36 1 10.5325 -6.7481 -1.4674 37 1 6.9768 -9.3135 -3.1665 38 1 6.3547 -10.5375 -2.0281 39 1 5.3025 -8.3075 -1.6518 40 1 6.2406 -8.8454 -0.2412 41 1 7.0487 -7.0011 0.8008 42 1 5.8627 -6.0225 -0.1013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496509871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:38 Heat of formation + Delta-G solvation = -111.937152 kcal Electronic energy + Delta-G solvation = -28143.997118 eV Core-core repulsion = 23932.345082 eV Total energy + Delta-G solvation = -4211.652037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66206 -40.24199 -38.61393 -37.66796 -37.60190 -34.73870 -34.46025 -33.96172 -33.15074 -31.86902 -30.34805 -28.57078 -27.25311 -25.25235 -24.44824 -23.42808 -22.78246 -20.12030 -19.97599 -19.79995 -19.17448 -18.46233 -17.59168 -17.45363 -16.65169 -16.50842 -15.88060 -15.64782 -15.50115 -15.14588 -15.00949 -14.77668 -14.69989 -14.40030 -14.08583 -14.00852 -13.58515 -13.22494 -12.81339 -12.68650 -12.53646 -12.46237 -12.25937 -12.15449 -11.93999 -11.72452 -11.63456 -11.29091 -11.04830 -10.69523 -10.60897 -10.21003 -10.12180 -9.76589 -9.69846 -9.08169 -8.85619 -8.60179 -8.37289 -6.47241 -4.00163 1.99343 2.26788 2.52147 2.94759 2.99669 3.05432 3.08396 3.12027 3.49009 3.64386 3.95365 3.98070 4.03936 4.27809 4.40087 4.46868 4.53541 4.69843 4.75377 4.79893 4.90291 5.03366 5.07902 5.19329 5.24621 5.35352 5.40449 5.56865 5.58025 5.70168 5.72981 5.76833 5.99327 6.15946 6.48604 6.75506 7.28278 7.37811 7.69141 7.88443 7.94147 8.36539 8.52706 8.74651 9.22855 9.55469 10.64755 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.002584 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.867850 B =10834.528300 C =11787.531400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.582 6.582 12 C 0.124 3.876 13 N -0.724 5.724 14 C 0.711 3.289 15 O -0.590 6.590 16 N -0.633 5.633 17 C 0.117 3.883 18 C 0.105 3.895 19 N -0.614 5.614 20 C 0.655 3.345 21 O -0.532 6.532 22 O -0.343 6.343 23 C 0.063 3.937 24 C -0.168 4.168 25 C 0.125 3.875 26 H 0.088 0.912 27 C 0.102 3.898 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.406 0.594 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 -13.907 -3.405 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.212 5.212 10 C 0.224 3.776 11 O -0.467 6.467 12 C -0.004 4.004 13 N -0.384 5.384 14 C 0.412 3.588 15 O -0.468 6.468 16 N -0.371 5.371 17 C -0.007 4.007 18 C -0.017 4.017 19 N -0.361 5.361 20 C 0.409 3.591 21 O -0.417 6.417 22 O -0.255 6.255 23 C -0.011 4.011 24 C -0.206 4.206 25 C 0.020 3.980 26 H 0.106 0.894 27 C -0.023 4.023 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.246 0.754 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.683 -14.127 -3.325 20.644 hybrid contribution -0.171 1.197 0.021 1.209 sum 14.512 -12.930 -3.304 19.715 Atomic orbital electron populations 1.69614 1.05733 1.27910 1.47916 1.25073 0.95539 0.98219 0.97032 0.86670 0.79941 0.83718 0.79175 1.19360 1.19948 1.19174 1.19430 0.78912 0.96790 1.48825 0.86070 1.42120 1.07722 1.06155 1.65167 1.19611 0.88006 0.84885 0.85140 1.90515 1.69250 1.30934 1.55985 1.20840 0.93473 0.82744 1.03369 1.44938 1.05154 1.09419 1.78892 1.15713 0.82725 0.82523 0.77828 1.90912 1.55182 1.42675 1.58054 1.47132 1.07093 1.04133 1.78715 1.21851 0.80458 1.01188 0.97204 1.22261 0.94937 0.85834 0.98688 1.47527 1.07435 1.05741 1.75348 1.18002 0.85326 0.79485 0.76287 1.90973 1.11191 1.84549 1.54992 1.86931 1.26074 1.32104 1.80367 1.23357 0.79413 1.00697 0.97649 1.22280 1.00991 0.93910 1.03427 1.21349 0.79962 0.96749 0.99972 0.89365 1.22235 0.94556 0.88241 0.97289 0.91319 0.79187 0.89712 0.89839 0.75362 0.87105 0.90963 0.90337 0.86841 0.90402 0.86144 0.87057 0.89015 0.90373 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.26 13.96 55.50 0.77 -23.49 16 2 C 0.05 1.19 5.50 -17.46 -0.10 1.10 16 3 Si 0.88 18.41 27.74 -169.99 -4.71 13.70 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.10 6.52 56.52 0.37 -4.73 16 7 C -0.31 -8.26 10.16 -14.93 -0.15 -8.41 16 8 H 0.12 3.66 7.39 -52.49 -0.39 3.28 16 9 N -0.57 -12.75 5.09 -10.97 -0.06 -12.80 16 10 C 0.44 9.05 7.85 -10.99 -0.09 8.96 16 11 O -0.58 -13.72 15.24 5.55 0.08 -13.63 16 12 C 0.12 2.02 6.16 -5.20 -0.03 1.99 16 13 N -0.72 -10.67 5.44 -66.41 -0.36 -11.03 16 14 C 0.71 10.24 8.30 -86.92 -0.72 9.52 16 15 O -0.59 -10.29 15.78 5.28 0.08 -10.21 16 16 N -0.63 -6.89 2.94 -177.97 -0.52 -7.41 16 17 C 0.12 1.11 6.57 -3.64 -0.02 1.09 16 18 C 0.11 0.93 6.50 -3.32 -0.02 0.91 16 19 N -0.61 -5.61 2.94 -171.43 -0.50 -6.11 16 20 C 0.65 7.56 8.30 53.80 0.45 8.01 16 21 O -0.53 -7.98 16.25 -19.36 -0.31 -8.29 16 22 O -0.34 -3.47 10.57 -39.73 -0.42 -3.89 16 23 C 0.06 0.34 7.15 37.14 0.27 0.60 16 24 C -0.17 -0.80 5.65 -27.16 -0.15 -0.96 16 25 C 0.12 0.89 3.20 -68.16 -0.22 0.67 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 C 0.10 0.84 5.84 -3.34 -0.02 0.82 16 28 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.37 7.35 5.76 -40.82 -0.24 7.11 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.41 5.73 4.90 -40.82 -0.20 5.53 16 33 H 0.11 1.14 7.03 -51.93 -0.36 0.77 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 1.04 6.73 -51.93 -0.35 0.69 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.42 7.77 -51.93 -0.40 0.02 16 41 H 0.08 0.60 7.97 -51.93 -0.41 0.18 16 42 H 0.10 0.83 5.56 -51.93 -0.29 0.54 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -35.09 344.42 -6.77 -41.85 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.19 Total: 11.82 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: -0.81 Total: 24.30 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.67 Total: -60.85 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.57 Total: -36.02 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.71 Total: 13.70 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.09 -6.77 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496509871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.083 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds