Wall clock time and date at job start Fri Apr 10 2020 18:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48503 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46914 * 299.99253 * 3 2 1 6 6 H 1.48497 * 109.47203 * 59.99765 * 3 2 1 7 7 C 1.37875 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00471 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00197 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47305 * 180.02562 * 9 7 2 11 11 C 1.36580 * 125.84086 * 84.97799 * 10 9 7 12 12 C 1.34834 * 108.99752 * 180.02562 * 11 10 9 13 13 C 1.41389 * 108.25627 * 359.97438 * 12 11 10 14 14 N 1.32602 * 126.40390 * 179.97438 * 13 12 11 15 15 C 1.34611 * 119.99713 * 0.03238 * 14 13 12 16 16 O 1.22175 * 120.00127 * 359.97438 * 15 14 13 17 17 N 1.33943 * 119.99703 * 179.97438 * 15 14 13 18 18 C 1.33642 * 119.99472 * 174.72504 * 17 15 14 19 19 C 1.39061 * 126.07368 * 5.16132 * 18 17 15 20 20 C 1.39669 * 107.90510 * 179.83718 * 19 18 17 21 21 C 1.40621 * 131.97467 * 180.02562 * 20 19 18 22 22 C 1.36372 * 119.31449 * 180.38139 * 21 20 19 23 23 C 1.40228 * 119.51161 * 359.97438 * 22 21 20 24 24 C 1.35271 * 120.29803 * 359.97438 * 23 22 21 25 25 N 1.36011 * 120.76395 * 0.02846 * 24 23 22 26 26 N 1.38126 * 126.06566 * 185.46398 * 18 17 15 27 27 H 0.96997 * 125.98894 * 0.02562 * 26 18 17 28 28 N 1.37637 * 107.20018 * 0.02562 * 13 12 11 29 29 H 0.96994 * 126.38811 * 179.97438 * 28 13 12 30 30 H 0.96998 * 119.99998 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46490 * 60.00475 * 9 7 2 32 32 H 1.08994 * 109.47001 * 300.00624 * 9 7 2 33 33 H 1.07999 * 125.50408 * 0.02562 * 11 10 9 34 34 H 1.07997 * 125.86819 * 179.73725 * 12 11 10 35 35 H 1.08005 * 126.05133 * 359.97438 * 19 18 17 36 36 H 1.08002 * 120.34460 * 0.35971 * 21 20 19 37 37 H 1.07994 * 120.24712 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.85092 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.62189 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6128 0.0027 11 6 2.7963 -4.1567 1.1061 12 6 3.6093 -5.1598 0.7178 13 6 3.5378 -5.2681 -0.6901 14 7 4.1938 -6.1371 -1.4469 15 6 5.0248 -7.0311 -0.8792 16 8 5.1749 -7.0414 0.3332 17 7 5.6870 -7.9093 -1.6436 18 6 6.5904 -8.7260 -1.0933 19 6 6.8695 -8.8426 0.2640 20 6 7.8704 -9.8050 0.4154 21 6 8.5224 -10.3127 1.5532 22 6 9.4877 -11.2640 1.4007 23 6 9.8122 -11.7188 0.1145 24 6 9.1729 -11.2188 -0.9677 25 7 8.2085 -10.2698 -0.8291 26 7 7.4169 -9.5999 -1.7724 27 1 7.4438 -9.7286 -2.7334 28 7 2.6608 -4.3021 -1.1286 29 1 2.4071 -4.1303 -2.0489 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5575 -0.8881 32 1 0.6246 -2.5563 0.8919 33 1 2.6396 -3.8352 2.1252 34 1 4.2143 -5.7724 1.3697 35 1 6.3947 -8.2888 1.0604 36 1 8.2618 -9.9528 2.5375 37 1 9.9983 -11.6640 2.2641 38 1 10.5754 -12.4723 -0.0125 39 1 9.4318 -11.5767 -1.9532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554416421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:41:17 Heat of formation + Delta-G solvation = 229.662117 kcal Electronic energy + Delta-G solvation = -25349.904493 eV Core-core repulsion = 21492.666983 eV Total energy + Delta-G solvation = -3857.237510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -42.36829 -40.49302 -38.67694 -37.34740 -34.37604 -33.66097 -32.80918 -32.47556 -30.88686 -30.73637 -30.37928 -28.47866 -26.50893 -24.49453 -23.58029 -22.68859 -22.31049 -21.10135 -20.81452 -19.34131 -18.68544 -16.97811 -16.86995 -16.60821 -16.32292 -16.18293 -15.81152 -15.34723 -15.09396 -14.76141 -14.56556 -14.42483 -13.98506 -13.69334 -13.20542 -13.01452 -12.68594 -12.59944 -12.47804 -12.24730 -12.13436 -11.79295 -11.25486 -11.02867 -11.00035 -10.44768 -10.26878 -10.14943 -10.03189 -9.39253 -8.93739 -8.83495 -8.78045 -8.39495 -7.94620 -7.14061 -6.58745 -6.30069 -4.54829 0.30220 0.65124 0.81486 1.91749 2.32389 2.58854 3.11089 3.12002 3.20246 3.26198 3.29605 3.64078 4.07493 4.14746 4.27912 4.39802 4.50608 4.63496 4.79323 4.90692 5.11668 5.28508 5.32185 5.40326 5.45223 5.59436 5.81635 5.90117 6.05443 6.14245 6.25739 6.57772 6.61636 6.70506 6.73787 6.98657 7.08271 7.27199 7.49968 7.63172 7.74373 7.92383 8.11688 8.35140 8.56615 8.86182 9.15183 10.01583 10.62359 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.001988 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.739156 B =14078.534053 C =14266.089928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.256 3.744 10 N -0.350 5.350 11 C 0.157 3.843 12 C -0.334 4.334 13 C 0.476 3.524 14 N -0.670 5.670 15 C 0.666 3.334 16 O -0.643 6.643 17 N -0.634 5.634 18 C 0.478 3.522 19 C -0.302 4.302 20 C 0.168 3.832 21 C -0.128 4.128 22 C -0.064 4.064 23 C -0.191 4.191 24 C 0.119 3.881 25 N -0.275 5.275 26 N -0.492 5.492 27 H 0.449 0.551 28 N -0.475 5.475 29 H 0.443 0.557 30 H 0.270 0.730 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.184 0.816 34 H 0.183 0.817 35 H 0.199 0.801 36 H 0.156 0.844 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.461 -22.441 2.035 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.137 5.137 11 C 0.013 3.987 12 C -0.367 4.367 13 C 0.221 3.779 14 N -0.431 5.431 15 C 0.366 3.634 16 O -0.528 6.528 17 N -0.386 5.386 18 C 0.224 3.776 19 C -0.334 4.334 20 C 0.058 3.942 21 C -0.148 4.148 22 C -0.086 4.086 23 C -0.216 4.216 24 C -0.008 4.008 25 N -0.046 5.046 26 N -0.226 5.226 27 H 0.298 0.702 28 N -0.199 5.199 29 H 0.290 0.710 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.201 0.799 34 H 0.200 0.800 35 H 0.216 0.784 36 H 0.174 0.826 37 H 0.160 0.840 38 H 0.173 0.827 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 16.718 -21.960 0.621 27.606 hybrid contribution 0.495 0.951 0.161 1.084 sum 17.213 -21.009 0.782 27.171 Atomic orbital electron populations 1.69913 1.06110 1.28014 1.48479 1.24960 0.95004 0.99700 0.93986 0.86256 0.80102 0.82163 0.77963 1.19404 1.20599 1.20474 1.21498 0.94148 0.89647 1.53920 0.91196 1.19975 0.85681 0.79915 1.00499 1.47885 1.40202 1.29248 0.96372 1.22733 0.91681 0.92328 0.91934 1.22482 1.11750 1.07131 0.95323 1.18949 0.84348 0.85017 0.89595 1.68309 1.23558 1.15011 1.36172 1.17495 0.81102 0.82169 0.82683 1.90586 1.68784 1.75122 1.18283 1.68466 1.16387 1.14782 1.38980 1.18509 0.86265 0.85574 0.87262 1.23003 1.05334 1.06734 0.98296 1.19642 0.96344 0.95455 0.82784 1.20769 0.97729 0.99128 0.97180 1.21234 0.95175 0.94470 0.97692 1.20643 1.04473 1.05296 0.91158 1.21600 0.88065 0.88933 1.02198 1.43032 1.27913 1.30593 1.03030 1.44332 1.35025 1.39389 1.03899 0.70240 1.44442 1.42368 1.29767 1.03357 0.71013 0.92025 0.93208 0.91599 0.79931 0.80048 0.78425 0.82646 0.84013 0.82653 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 13.29 55.43 0.74 -22.67 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.05 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.55 -13.87 9.39 -34.44 -0.32 -14.20 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.26 5.70 6.19 -5.19 -0.03 5.67 16 10 N -0.35 -7.15 3.64 -62.24 -0.23 -7.37 16 11 C 0.16 2.93 11.45 -16.64 -0.19 2.74 16 12 C -0.33 -6.91 9.52 -39.59 -0.38 -7.29 16 13 C 0.48 10.60 8.08 -155.30 -1.25 9.34 16 14 N -0.67 -16.07 10.62 -15.70 -0.17 -16.24 16 15 C 0.67 15.86 8.41 -87.81 -0.74 15.12 16 16 O -0.64 -15.14 10.22 4.76 0.05 -15.09 16 17 N -0.63 -13.49 10.64 -15.97 -0.17 -13.66 16 18 C 0.48 8.12 8.03 -154.82 -1.24 6.88 16 19 C -0.30 -4.79 9.65 -38.74 -0.37 -5.16 16 20 C 0.17 1.90 6.77 -84.08 -0.57 1.33 16 21 C -0.13 -0.97 10.11 -39.36 -0.40 -1.36 16 22 C -0.06 -0.30 10.08 -39.51 -0.40 -0.70 16 23 C -0.19 -0.72 9.99 -39.89 -0.40 -1.12 16 24 C 0.12 0.60 11.16 -16.76 -0.19 0.42 16 25 N -0.28 -2.59 3.85 -10.63 -0.04 -2.63 16 26 N -0.49 -5.67 7.46 31.16 0.23 -5.43 16 27 H 0.45 3.78 8.96 -182.54 -1.64 2.14 16 28 N -0.48 -9.65 7.39 31.35 0.23 -9.41 16 29 H 0.44 8.08 8.96 -182.55 -1.64 6.45 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.18 2.71 8.06 -52.49 -0.42 2.29 16 34 H 0.18 3.87 5.76 -52.49 -0.30 3.56 16 35 H 0.20 3.57 5.73 -52.48 -0.30 3.27 16 36 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 38 H 0.16 0.10 8.06 -52.49 -0.42 -0.32 16 39 H 0.17 0.24 8.06 -52.49 -0.42 -0.18 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -36.76 344.37 -12.15 -48.91 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.38 Total: 10.08 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: -6.58 Total: 13.30 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: 0.60 Total: -77.42 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.05 Total: -15.09 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.76 -12.15 -48.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554416421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.572 kcal (2) G-P(sol) polarization free energy of solvation -36.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 241.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 229.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds