Wall clock time and date at job start Fri Apr 10 2020 18:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48503 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46914 * 299.99253 * 3 2 1 6 6 H 1.48497 * 109.47203 * 59.99765 * 3 2 1 7 7 C 1.37875 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00471 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00197 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47305 * 180.02562 * 9 7 2 11 11 C 1.36580 * 125.84086 * 84.97799 * 10 9 7 12 12 C 1.34834 * 108.99752 * 180.02562 * 11 10 9 13 13 C 1.41389 * 108.25627 * 359.97438 * 12 11 10 14 14 N 1.32602 * 126.40390 * 179.97438 * 13 12 11 15 15 C 1.34611 * 119.99713 * 0.03238 * 14 13 12 16 16 O 1.22175 * 120.00127 * 359.97438 * 15 14 13 17 17 N 1.33943 * 119.99703 * 179.97438 * 15 14 13 18 18 C 1.33642 * 119.99472 * 174.72504 * 17 15 14 19 19 C 1.39061 * 126.07368 * 5.16132 * 18 17 15 20 20 C 1.39669 * 107.90510 * 179.83718 * 19 18 17 21 21 C 1.40621 * 131.97467 * 180.02562 * 20 19 18 22 22 C 1.36372 * 119.31449 * 180.38139 * 21 20 19 23 23 C 1.40228 * 119.51161 * 359.97438 * 22 21 20 24 24 C 1.35271 * 120.29803 * 359.97438 * 23 22 21 25 25 N 1.36011 * 120.76395 * 0.02846 * 24 23 22 26 26 N 1.38126 * 126.06566 * 185.46398 * 18 17 15 27 27 H 0.96997 * 125.98894 * 0.02562 * 26 18 17 28 28 N 1.37637 * 107.20018 * 0.02562 * 13 12 11 29 29 H 0.96994 * 126.38811 * 179.97438 * 28 13 12 30 30 H 0.96998 * 119.99998 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46490 * 60.00475 * 9 7 2 32 32 H 1.08994 * 109.47001 * 300.00624 * 9 7 2 33 33 H 1.07999 * 125.50408 * 0.02562 * 11 10 9 34 34 H 1.07997 * 125.86819 * 179.73725 * 12 11 10 35 35 H 1.08005 * 126.05133 * 359.97438 * 19 18 17 36 36 H 1.08002 * 120.34460 * 0.35971 * 21 20 19 37 37 H 1.07994 * 120.24712 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.85092 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.62189 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6128 0.0027 11 6 2.7963 -4.1567 1.1061 12 6 3.6093 -5.1598 0.7178 13 6 3.5378 -5.2681 -0.6901 14 7 4.1938 -6.1371 -1.4469 15 6 5.0248 -7.0311 -0.8792 16 8 5.1749 -7.0414 0.3332 17 7 5.6870 -7.9093 -1.6436 18 6 6.5904 -8.7260 -1.0933 19 6 6.8695 -8.8426 0.2640 20 6 7.8704 -9.8050 0.4154 21 6 8.5224 -10.3127 1.5532 22 6 9.4877 -11.2640 1.4007 23 6 9.8122 -11.7188 0.1145 24 6 9.1729 -11.2188 -0.9677 25 7 8.2085 -10.2698 -0.8291 26 7 7.4169 -9.5999 -1.7724 27 1 7.4438 -9.7286 -2.7334 28 7 2.6608 -4.3021 -1.1286 29 1 2.4071 -4.1303 -2.0489 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5575 -0.8881 32 1 0.6246 -2.5563 0.8919 33 1 2.6396 -3.8352 2.1252 34 1 4.2143 -5.7724 1.3697 35 1 6.3947 -8.2888 1.0604 36 1 8.2618 -9.9528 2.5375 37 1 9.9983 -11.6640 2.2641 38 1 10.5754 -12.4723 -0.0125 39 1 9.4318 -11.5767 -1.9532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554416421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:41:12 Heat of formation + Delta-G solvation = 201.799439 kcal Electronic energy + Delta-G solvation = -25351.112709 eV Core-core repulsion = 21492.666983 eV Total energy + Delta-G solvation = -3858.445726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -43.28345 -42.10396 -40.04351 -38.29420 -35.99100 -34.97727 -34.25737 -33.57556 -32.39041 -32.18983 -31.68574 -29.41780 -28.25437 -25.32430 -25.00059 -24.02656 -23.35992 -22.63543 -22.25550 -20.42328 -19.83838 -18.84372 -18.21160 -17.58397 -17.40550 -17.11838 -17.02361 -16.62020 -16.38504 -16.19337 -15.93230 -15.58178 -15.25585 -15.25222 -14.52985 -14.45051 -14.27933 -14.03379 -13.56492 -13.29619 -13.24230 -13.01826 -12.73777 -12.63156 -12.31824 -12.05674 -11.84156 -11.47501 -11.13831 -10.94005 -10.76227 -10.42238 -9.93953 -9.85653 -9.56913 -8.57992 -8.30645 -7.83732 -6.53732 -0.42384 -0.13101 -0.05690 0.46886 0.72176 1.37333 1.39624 1.42448 1.52921 2.06093 2.31693 2.36000 2.43403 2.90110 2.97622 3.54110 3.66068 3.69464 3.79949 3.90039 3.98652 3.99570 4.22001 4.43963 4.60422 4.65806 4.81970 4.89478 4.96057 5.01095 5.11442 5.26984 5.31358 5.37182 5.43728 5.54475 5.63072 5.73917 5.89079 6.15775 6.25912 6.36377 6.55896 6.71152 6.84659 7.19659 7.32959 8.46212 8.68809 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.001988 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.739156 B =14078.534053 C =14266.089928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.564 4.564 8 H 0.057 0.943 9 C 0.269 3.731 10 N -0.355 5.355 11 C 0.176 3.824 12 C -0.348 4.348 13 C 0.459 3.541 14 N -0.698 5.698 15 C 0.648 3.352 16 O -0.666 6.666 17 N -0.691 5.691 18 C 0.459 3.541 19 C -0.381 4.381 20 C 0.196 3.804 21 C -0.158 4.158 22 C -0.024 4.024 23 C -0.157 4.157 24 C 0.100 3.900 25 N -0.254 5.254 26 N -0.480 5.480 27 H 0.462 0.538 28 N -0.475 5.475 29 H 0.448 0.552 30 H 0.274 0.726 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.224 0.776 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.188 0.812 38 H 0.210 0.790 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.728 -25.859 3.048 33.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.603 4.603 8 H 0.075 0.925 9 C 0.152 3.848 10 N -0.141 5.141 11 C 0.033 3.967 12 C -0.381 4.381 13 C 0.203 3.797 14 N -0.460 5.460 15 C 0.347 3.653 16 O -0.552 6.552 17 N -0.450 5.450 18 C 0.212 3.788 19 C -0.413 4.413 20 C 0.081 3.919 21 C -0.178 4.178 22 C -0.047 4.047 23 C -0.179 4.179 24 C -0.025 4.025 25 N -0.022 5.022 26 N -0.214 5.214 27 H 0.314 0.686 28 N -0.200 5.200 29 H 0.296 0.704 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.241 0.759 34 H 0.189 0.811 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.205 0.795 38 H 0.227 0.773 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 21.074 -25.486 1.573 33.108 hybrid contribution -0.221 1.392 0.001 1.409 sum 20.853 -24.095 1.574 31.904 Atomic orbital electron populations 1.69976 1.07097 1.28895 1.49184 1.25632 0.95699 1.02417 0.93669 0.85369 0.78505 0.78812 0.78168 1.19956 1.20358 1.19555 1.21659 0.93687 0.91051 1.53869 0.92500 1.19701 0.85493 0.79441 1.00193 1.47784 1.40352 1.29157 0.96817 1.23278 0.89724 0.90720 0.92982 1.22347 1.12836 1.08171 0.94755 1.19173 0.84704 0.85307 0.90469 1.68289 1.24540 1.15930 1.37207 1.17846 0.81633 0.82816 0.83014 1.90549 1.69895 1.76067 1.18718 1.68356 1.20043 1.17570 1.38989 1.18542 0.86153 0.85739 0.88347 1.22335 1.10194 1.11476 0.97249 1.19837 0.94253 0.93217 0.84581 1.21096 0.99310 1.01066 0.96377 1.21946 0.91905 0.90845 1.00008 1.21528 1.02976 1.03674 0.89767 1.22781 0.86595 0.87602 1.05558 1.43557 1.26979 1.29639 1.02007 1.44197 1.34194 1.38349 1.04634 0.68583 1.44397 1.42315 1.29600 1.03689 0.70376 0.91705 0.94124 0.91060 0.75921 0.81113 0.82157 0.81682 0.79459 0.77292 0.77090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.22 13.29 21.45 0.28 -47.94 16 2 C 0.03 1.42 5.46 84.65 0.46 1.88 16 3 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.56 -28.59 9.39 25.60 0.24 -28.35 16 8 H 0.06 3.00 7.81 -2.91 -0.02 2.97 16 9 C 0.27 12.20 6.19 85.64 0.53 12.73 16 10 N -0.35 -14.93 3.64 -350.82 -1.28 -16.20 16 11 C 0.18 6.75 11.45 83.17 0.95 7.71 16 12 C -0.35 -15.50 9.52 22.26 0.21 -15.28 16 13 C 0.46 22.14 8.08 134.02 1.08 23.22 16 14 N -0.70 -36.89 10.62 -321.71 -3.42 -40.30 16 15 C 0.65 34.45 8.41 179.37 1.51 35.96 16 16 O -0.67 -35.36 10.22 -5.89 -0.06 -35.42 16 17 N -0.69 -32.83 10.64 -322.91 -3.44 -36.27 16 18 C 0.46 17.21 8.03 132.97 1.07 18.27 16 19 C -0.38 -13.42 9.65 22.81 0.22 -13.20 16 20 C 0.20 4.32 6.77 39.25 0.27 4.59 16 21 C -0.16 -1.89 10.11 22.42 0.23 -1.67 16 22 C -0.02 -0.05 10.08 22.32 0.22 0.17 16 23 C -0.16 0.14 9.99 22.07 0.22 0.36 16 24 C 0.10 0.39 11.16 83.36 0.93 1.32 16 25 N -0.25 -4.15 3.85 -187.54 -0.72 -4.87 16 26 N -0.48 -11.20 7.46 -55.34 -0.41 -11.61 16 27 H 0.46 7.72 8.96 -213.27 -1.91 5.80 16 28 N -0.47 -20.51 7.39 -54.72 -0.40 -20.91 16 29 H 0.45 17.59 8.96 -213.28 -1.91 15.68 16 30 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.22 6.45 8.06 -2.91 -0.02 6.43 16 34 H 0.17 8.01 5.76 -2.91 -0.02 8.00 16 35 H 0.16 6.80 5.73 -2.91 -0.02 6.78 16 36 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.19 -1.01 8.06 -2.91 -0.02 -1.03 16 38 H 0.21 -2.04 8.06 -2.91 -0.02 -2.07 16 39 H 0.21 -0.98 8.06 -2.91 -0.02 -1.00 16 Total: -1.00 -92.00 344.37 -1.96 -93.96 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -2.69 Total: 28.64 kcal Atomic # 6 Polarization: 39.56 SS G_CDS: 8.14 Total: 47.70 kcal Atomic # 7 Polarization: -168.72 SS G_CDS: -9.38 Total: -178.11 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.06 Total: -35.42 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -92.00 -1.96 -93.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554416421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 295.764 kcal (2) G-P(sol) polarization free energy of solvation -92.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds