Wall clock time and date at job start Fri Apr 10 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 110.99917 * 2 1 4 4 C 1.50701 * 109.47304 * 293.95595 * 3 2 1 5 5 H 1.08000 * 119.99683 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00439 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99784 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00425 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47458 * 89.99875 * 8 6 4 10 10 H 1.48503 * 109.47146 * 210.00180 * 8 6 4 11 11 H 1.48501 * 109.46862 * 329.99592 * 8 6 4 12 12 C 1.46903 * 111.00286 * 123.95816 * 2 1 3 13 13 C 1.52997 * 109.47311 * 66.04081 * 12 2 1 14 14 H 1.09001 * 109.46922 * 305.00237 * 13 12 2 15 15 O 1.42905 * 109.46921 * 64.99969 * 13 12 2 16 16 C 1.52997 * 109.47232 * 185.00088 * 13 12 2 17 17 O 1.42899 * 109.47457 * 175.00226 * 16 13 12 18 18 C 1.35652 * 117.00398 * 180.02562 * 17 16 13 19 19 C 1.38632 * 120.13247 * 359.97438 * 18 17 16 20 20 C 1.38138 * 120.15276 * 180.02562 * 19 18 17 21 21 C 1.38413 * 120.43504 * 359.97438 * 20 19 18 22 22 C 1.38134 * 120.27078 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.07924 * 180.02562 * 22 21 20 24 24 C 1.39962 * 119.83649 * 359.77052 * 22 21 20 25 25 C 1.47392 * 120.21291 * 180.25458 * 24 22 21 26 26 N 1.34783 * 119.99820 * 90.22664 * 25 24 22 27 27 O 1.21601 * 119.99860 * 270.22731 * 25 24 22 28 28 H 1.09004 * 109.46329 * 296.04260 * 1 2 3 29 29 H 1.08993 * 109.47505 * 56.04021 * 1 2 3 30 30 H 1.09004 * 109.47104 * 176.05293 * 1 2 3 31 31 H 1.08992 * 109.47398 * 53.95827 * 3 2 1 32 32 H 1.09008 * 109.47021 * 173.96050 * 3 2 1 33 33 H 0.97006 * 120.00306 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46601 * 306.04093 * 12 2 1 35 35 H 1.08994 * 109.46766 * 186.04454 * 12 2 1 36 36 H 0.96696 * 114.00036 * 60.00010 * 15 13 12 37 37 H 1.09002 * 109.47196 * 295.00207 * 16 13 12 38 38 H 1.09004 * 109.46881 * 54.99722 * 16 13 12 39 39 H 1.07996 * 119.92786 * 0.02677 * 19 18 17 40 40 H 1.07997 * 119.78072 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.86411 * 180.02562 * 21 20 19 42 42 H 0.96995 * 120.00020 * 0.02562 * 26 25 24 43 43 H 0.97003 * 119.99361 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5289 7 7 2.7136 4.0012 -0.6158 8 14 1.5825 4.1869 -3.1381 9 1 0.2707 4.8680 -2.9954 10 1 2.6251 5.1876 -3.4801 11 1 1.4981 3.1713 -4.2182 12 6 1.9956 -0.7661 1.1375 13 6 1.6315 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1802 16 6 2.0701 -3.0200 2.2130 17 8 1.6274 -4.3746 2.1084 18 6 1.9360 -5.2046 3.1361 19 6 2.6506 -4.7286 4.2245 20 6 2.9656 -5.5735 5.2710 21 6 2.5715 -6.9000 5.2441 22 6 1.8588 -7.3930 4.1684 23 9 1.4757 -8.6884 4.1464 24 6 1.5299 -6.5459 3.1039 25 6 0.7648 -7.0618 1.9546 26 7 -0.5819 -7.0078 1.9626 27 8 1.3486 -7.5362 0.9992 28 1 -0.3632 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0253 -0.0707 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1081 33 1 2.9888 4.9171 -0.7781 34 1 1.5613 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 3.2601 -2.7167 -0.1362 37 1 3.1571 -2.9979 2.2905 38 1 1.6332 -2.5624 3.1007 39 1 2.9619 -3.6949 4.2543 40 1 3.5229 -5.1964 6.1157 41 1 2.8224 -7.5524 6.0674 42 1 -1.0476 -6.6290 2.7246 43 1 -1.0854 -7.3470 1.2060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583087573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:13 Heat of formation + Delta-G solvation = -136.644548 kcal Electronic energy + Delta-G solvation = -27292.886103 eV Core-core repulsion = 23060.242711 eV Total energy + Delta-G solvation = -4232.643391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -49.41331 -40.86385 -39.24119 -38.19873 -37.20628 -35.48758 -33.88525 -32.59558 -31.65855 -30.69817 -29.97000 -27.37425 -26.59701 -24.67951 -24.36537 -22.64644 -21.70268 -21.00752 -20.35896 -18.92238 -18.09075 -17.47747 -17.19829 -16.69935 -16.59921 -16.35910 -16.04453 -15.90156 -15.58680 -15.16404 -14.84832 -14.55325 -14.36378 -14.22865 -14.06098 -13.68592 -13.53565 -13.12215 -12.76153 -12.50808 -12.31210 -12.10282 -11.97342 -11.47980 -11.31183 -11.19115 -10.98311 -10.82964 -10.74227 -10.40929 -10.33490 -10.09356 -9.91851 -9.77178 -9.37493 -9.21934 -8.77309 -8.48246 -7.31383 -6.07342 -4.08442 0.46661 0.76164 2.31337 2.53894 2.96738 3.23417 3.29916 3.36312 3.41687 3.80543 4.23018 4.35679 4.44357 4.46933 4.49301 4.58432 4.64013 4.78214 4.83349 5.01282 5.22234 5.26169 5.30444 5.32762 5.43971 5.50244 5.60440 5.79983 5.86711 6.05790 6.12585 6.17800 6.25024 6.51413 6.69466 6.86110 7.03260 7.17907 7.23568 7.73909 7.87043 7.98722 8.01465 8.11002 8.47139 8.99376 9.56143 11.03628 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.002240 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.539814 B =12498.688672 C =13184.260659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.029 3.971 13 C 0.115 3.885 14 H 0.107 0.893 15 O -0.535 6.535 16 C 0.024 3.976 17 O -0.290 6.290 18 C 0.198 3.802 19 C -0.223 4.223 20 C -0.031 4.031 21 C -0.197 4.197 22 C 0.171 3.829 23 F -0.126 7.126 24 C -0.207 4.207 25 C 0.584 3.416 26 N -0.842 5.842 27 O -0.524 6.524 28 H 0.010 0.990 29 H 0.077 0.923 30 H 0.047 0.953 31 H -0.009 1.009 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.371 0.629 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.402 0.598 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 -20.269 16.213 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.253 5.253 3 C 0.069 3.931 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.101 4.101 13 C 0.055 3.945 14 H 0.125 0.875 15 O -0.339 6.339 16 C -0.052 4.052 17 O -0.202 6.202 18 C 0.150 3.850 19 C -0.242 4.242 20 C -0.049 4.049 21 C -0.216 4.216 22 C 0.150 3.850 23 F -0.105 7.105 24 C -0.211 4.211 25 C 0.366 3.634 26 N -0.406 5.406 27 O -0.399 6.399 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.008 0.992 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.218 0.782 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.230 0.770 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.871 -20.770 14.870 25.705 hybrid contribution -0.240 1.142 0.525 1.280 sum -3.110 -19.628 15.395 25.138 Atomic orbital electron populations 1.22292 0.88785 0.99700 1.00663 1.61999 1.07014 1.17617 1.38676 1.19756 0.95328 0.81254 0.96805 1.21154 1.34812 0.96881 1.01675 0.91730 1.24989 0.95240 0.97342 0.97074 1.69954 1.38367 1.11497 1.34184 0.86481 0.77977 0.79215 0.83683 1.20735 1.21234 1.19676 1.22619 1.00938 0.92534 0.93988 1.21982 0.98941 0.90693 0.82883 0.87547 1.86677 1.23178 1.83672 1.40396 1.23929 1.00357 0.79307 1.01617 1.86169 1.73031 1.21447 1.39514 1.18631 0.91194 0.88179 0.87006 1.21353 1.05416 1.02144 0.95257 1.20939 0.94820 0.91848 0.97285 1.20971 1.04056 0.97426 0.99147 1.17233 0.96125 0.78005 0.93594 1.91549 1.88925 1.33551 1.96437 1.18978 1.11062 0.92897 0.98210 1.17649 0.82498 0.77465 0.85745 1.43733 1.06741 1.65507 1.24573 1.90872 1.69706 1.44496 1.34821 0.97143 0.90415 0.93419 0.99166 0.95254 0.92907 0.94952 0.90666 0.78224 0.90906 0.90589 0.83914 0.84067 0.83909 0.76958 0.76261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.14 60.07 0.55 1.20 16 2 N -0.53 -10.98 4.70 -244.37 -1.15 -12.13 16 3 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 4 C -0.51 -14.08 8.46 -34.44 -0.29 -14.37 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.03 0.45 4.60 -3.82 -0.02 0.43 16 13 C 0.12 1.58 3.20 -26.73 -0.09 1.49 16 14 H 0.11 1.54 6.34 -51.93 -0.33 1.21 16 15 O -0.54 -8.49 13.25 -40.08 -0.53 -9.02 16 16 C 0.02 0.24 4.37 37.16 0.16 0.41 16 17 O -0.29 -3.57 9.55 -23.50 -0.22 -3.79 16 18 C 0.20 2.14 6.70 -38.70 -0.26 1.88 16 19 C -0.22 -1.77 9.03 -39.47 -0.36 -2.13 16 20 C -0.03 -0.19 10.02 -39.55 -0.40 -0.59 16 21 C -0.20 -1.43 10.01 -39.56 -0.40 -1.82 16 22 C 0.17 1.69 7.29 -38.97 -0.28 1.41 16 23 F -0.13 -1.35 16.83 2.25 0.04 -1.31 16 24 C -0.21 -2.37 5.64 -104.79 -0.59 -2.96 16 25 C 0.58 7.67 6.70 -12.53 -0.08 7.59 16 26 N -0.84 -7.41 8.87 30.42 0.27 -7.14 16 27 O -0.52 -9.22 17.94 5.28 0.09 -9.12 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 1.60 6.76 -51.93 -0.35 1.25 16 30 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.79 7.93 -51.92 -0.41 0.37 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.37 4.65 9.05 45.56 0.41 5.06 16 37 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 38 H 0.08 0.63 7.66 -51.93 -0.40 0.23 16 39 H 0.14 0.88 6.29 -52.49 -0.33 0.55 16 40 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.40 2.40 8.81 -40.82 -0.36 2.04 16 43 H 0.41 3.05 8.93 -40.82 -0.36 2.68 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -36.00 370.29 -7.27 -43.27 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.89 Total: 3.95 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.17 Total: -1.17 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.14 Total: -44.88 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.66 Total: -21.94 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.00 -7.27 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583087573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.379 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds