Wall clock time and date at job start Fri Apr 10 2020 18:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 110.99917 * 2 1 4 4 C 1.50701 * 109.47304 * 293.95595 * 3 2 1 5 5 H 1.08000 * 119.99683 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00439 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99784 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00425 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47458 * 89.99875 * 8 6 4 10 10 H 1.48503 * 109.47146 * 210.00180 * 8 6 4 11 11 H 1.48501 * 109.46862 * 329.99592 * 8 6 4 12 12 C 1.46903 * 111.00286 * 123.95816 * 2 1 3 13 13 C 1.52997 * 109.47311 * 66.04081 * 12 2 1 14 14 H 1.09001 * 109.46922 * 305.00237 * 13 12 2 15 15 O 1.42905 * 109.46921 * 64.99969 * 13 12 2 16 16 C 1.52997 * 109.47232 * 185.00088 * 13 12 2 17 17 O 1.42899 * 109.47457 * 175.00226 * 16 13 12 18 18 C 1.35652 * 117.00398 * 180.02562 * 17 16 13 19 19 C 1.38632 * 120.13247 * 359.97438 * 18 17 16 20 20 C 1.38138 * 120.15276 * 180.02562 * 19 18 17 21 21 C 1.38413 * 120.43504 * 359.97438 * 20 19 18 22 22 C 1.38134 * 120.27078 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.07924 * 180.02562 * 22 21 20 24 24 C 1.39962 * 119.83649 * 359.77052 * 22 21 20 25 25 C 1.47392 * 120.21291 * 180.25458 * 24 22 21 26 26 N 1.34783 * 119.99820 * 90.22664 * 25 24 22 27 27 O 1.21601 * 119.99860 * 270.22731 * 25 24 22 28 28 H 1.09004 * 109.46329 * 296.04260 * 1 2 3 29 29 H 1.08993 * 109.47505 * 56.04021 * 1 2 3 30 30 H 1.09004 * 109.47104 * 176.05293 * 1 2 3 31 31 H 1.08992 * 109.47398 * 53.95827 * 3 2 1 32 32 H 1.09008 * 109.47021 * 173.96050 * 3 2 1 33 33 H 0.97006 * 120.00306 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46601 * 306.04093 * 12 2 1 35 35 H 1.08994 * 109.46766 * 186.04454 * 12 2 1 36 36 H 0.96696 * 114.00036 * 60.00010 * 15 13 12 37 37 H 1.09002 * 109.47196 * 295.00207 * 16 13 12 38 38 H 1.09004 * 109.46881 * 54.99722 * 16 13 12 39 39 H 1.07996 * 119.92786 * 0.02677 * 19 18 17 40 40 H 1.07997 * 119.78072 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.86411 * 180.02562 * 21 20 19 42 42 H 0.96995 * 120.00020 * 0.02562 * 26 25 24 43 43 H 0.97003 * 119.99361 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5289 7 7 2.7136 4.0012 -0.6158 8 14 1.5825 4.1869 -3.1381 9 1 0.2707 4.8680 -2.9954 10 1 2.6251 5.1876 -3.4801 11 1 1.4981 3.1713 -4.2182 12 6 1.9956 -0.7661 1.1375 13 6 1.6315 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1802 16 6 2.0701 -3.0200 2.2130 17 8 1.6274 -4.3746 2.1084 18 6 1.9360 -5.2046 3.1361 19 6 2.6506 -4.7286 4.2245 20 6 2.9656 -5.5735 5.2710 21 6 2.5715 -6.9000 5.2441 22 6 1.8588 -7.3930 4.1684 23 9 1.4757 -8.6884 4.1464 24 6 1.5299 -6.5459 3.1039 25 6 0.7648 -7.0618 1.9546 26 7 -0.5819 -7.0078 1.9626 27 8 1.3486 -7.5362 0.9992 28 1 -0.3632 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0253 -0.0707 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1081 33 1 2.9888 4.9171 -0.7781 34 1 1.5613 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 3.2601 -2.7167 -0.1362 37 1 3.1571 -2.9979 2.2905 38 1 1.6332 -2.5624 3.1007 39 1 2.9619 -3.6949 4.2543 40 1 3.5229 -5.1964 6.1157 41 1 2.8224 -7.5524 6.0674 42 1 -1.0476 -6.6290 2.7246 43 1 -1.0854 -7.3470 1.2060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583087573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:11 Heat of formation + Delta-G solvation = -167.381989 kcal Electronic energy + Delta-G solvation = -27294.218978 eV Core-core repulsion = 23060.242711 eV Total energy + Delta-G solvation = -4233.976267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -50.15367 -41.63794 -40.23263 -39.29693 -38.15758 -36.91309 -34.81582 -34.63389 -32.45083 -31.62062 -30.81759 -29.19783 -27.90944 -25.95324 -25.36099 -23.69704 -22.78281 -22.04586 -21.74885 -19.70683 -18.91372 -18.53310 -18.26370 -18.07114 -17.60755 -17.25724 -17.04957 -16.81887 -16.69948 -16.25989 -16.11312 -15.98112 -15.40671 -15.33176 -15.05832 -15.00034 -14.87892 -14.22436 -13.85441 -13.77219 -13.34347 -13.23239 -12.95486 -12.83045 -12.79100 -12.59859 -12.55808 -12.40898 -12.05059 -11.97380 -11.66538 -11.44523 -11.31515 -10.89541 -10.82605 -10.61875 -10.05384 -9.44181 -8.97165 -8.21335 -6.30314 -0.18099 0.12589 1.35765 1.40729 1.41967 1.53635 1.75085 2.34171 2.40328 2.47263 3.06300 3.11702 3.30502 3.52690 3.65850 3.81286 3.84699 3.86383 3.92091 4.03634 4.15086 4.24487 4.30750 4.36360 4.51031 4.68610 4.70893 4.72120 4.94564 4.97701 5.05377 5.08094 5.17533 5.23910 5.31134 5.56895 5.64700 5.72243 6.04536 6.14945 6.24783 6.30221 6.62301 6.85052 6.89145 7.14349 7.39288 8.89345 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.002240 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.539814 B =12498.688672 C =13184.260659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.545 5.545 3 C 0.209 3.791 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.932 5.932 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.030 3.970 13 C 0.123 3.877 14 H 0.097 0.903 15 O -0.563 6.563 16 C 0.030 3.970 17 O -0.316 6.316 18 C 0.180 3.820 19 C -0.217 4.217 20 C -0.018 4.018 21 C -0.185 4.185 22 C 0.152 3.848 23 F -0.138 7.138 24 C -0.230 4.230 25 C 0.576 3.424 26 N -0.823 5.823 27 O -0.584 6.584 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.072 0.928 31 H -0.033 1.033 32 H 0.008 0.992 33 H 0.265 0.735 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.383 0.617 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.165 0.835 40 H 0.182 0.818 41 H 0.170 0.830 42 H 0.417 0.583 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -20.291 18.167 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.269 5.269 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.194 1.194 12 C -0.099 4.099 13 C 0.063 3.937 14 H 0.115 0.885 15 O -0.369 6.369 16 C -0.045 4.045 17 O -0.229 6.229 18 C 0.132 3.868 19 C -0.236 4.236 20 C -0.036 4.036 21 C -0.204 4.204 22 C 0.132 3.868 23 F -0.116 7.116 24 C -0.235 4.235 25 C 0.360 3.640 26 N -0.386 5.386 27 O -0.463 6.463 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.091 0.909 31 H -0.015 1.015 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.231 0.769 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.183 0.817 40 H 0.199 0.801 41 H 0.187 0.813 42 H 0.248 0.752 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.749 -20.800 16.867 26.920 hybrid contribution -0.311 1.091 0.015 1.134 sum -3.060 -19.709 16.881 26.130 Atomic orbital electron populations 1.22247 0.87806 1.00939 1.00017 1.61860 1.08065 1.15221 1.41775 1.19387 0.93870 0.83523 0.94926 1.21469 1.34769 0.97472 1.02564 0.92378 1.25839 0.95050 0.98033 1.00500 1.70058 1.39259 1.11921 1.36051 0.85443 0.78044 0.78100 0.79413 1.19751 1.20616 1.19365 1.22678 1.01137 0.93252 0.92803 1.21833 0.98297 0.89611 0.83977 0.88546 1.86631 1.24442 1.83895 1.41937 1.23800 1.01604 0.78645 1.00426 1.86096 1.73833 1.22153 1.40816 1.18788 0.92559 0.87731 0.87706 1.21669 1.04087 1.03430 0.94386 1.21423 0.93542 0.90972 0.97643 1.21357 1.02159 0.98319 0.98563 1.17514 0.97371 0.77557 0.94390 1.91517 1.89242 1.34292 1.96559 1.19015 1.12351 0.93842 0.98259 1.18114 0.83521 0.76696 0.85669 1.43625 1.05752 1.64041 1.25182 1.90826 1.70990 1.47429 1.37091 0.96338 0.92743 0.90899 1.01519 0.97369 0.92647 0.93291 0.90218 0.76869 0.89021 0.87888 0.81736 0.80080 0.81273 0.75186 0.75601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.14 127.69 1.17 2.60 16 2 N -0.55 -22.62 4.70 -927.06 -4.36 -26.98 16 3 C 0.21 10.77 4.72 85.56 0.40 11.17 16 4 C -0.52 -29.58 8.46 25.60 0.22 -29.36 16 5 H 0.06 3.28 7.12 -2.91 -0.02 3.26 16 6 C 0.00 0.22 5.46 84.65 0.46 0.68 16 7 N -0.93 -55.06 13.29 21.44 0.28 -54.77 16 8 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 C 0.03 0.91 4.60 86.30 0.40 1.31 16 13 C 0.12 3.19 3.20 30.59 0.10 3.29 16 14 H 0.10 2.68 6.34 -2.39 -0.02 2.66 16 15 O -0.56 -17.61 13.25 -144.35 -1.91 -19.53 16 16 C 0.03 0.55 4.37 71.98 0.31 0.87 16 17 O -0.32 -7.41 9.55 -85.05 -0.81 -8.22 16 18 C 0.18 3.59 6.70 22.84 0.15 3.75 16 19 C -0.22 -2.68 9.03 22.34 0.20 -2.48 16 20 C -0.02 -0.15 10.02 22.29 0.22 0.07 16 21 C -0.19 -2.09 10.01 22.29 0.22 -1.87 16 22 C 0.15 2.84 7.29 22.66 0.17 3.01 16 23 F -0.14 -2.92 16.83 44.97 0.76 -2.16 16 24 C -0.23 -5.19 5.64 -19.98 -0.11 -5.30 16 25 C 0.58 15.61 6.70 86.65 0.58 16.19 16 26 N -0.82 -14.65 8.87 -175.91 -1.56 -16.21 16 27 O -0.58 -21.65 17.94 -4.03 -0.07 -21.73 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 2.27 6.76 -2.39 -0.02 2.25 16 30 H 0.07 2.35 6.37 -2.39 -0.02 2.33 16 31 H -0.03 -1.81 8.12 -2.39 -0.02 -1.83 16 32 H 0.01 0.45 7.93 -2.38 -0.02 0.43 16 33 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 34 H 0.05 1.34 8.12 -2.39 -0.02 1.32 16 35 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 36 H 0.38 9.44 9.05 -74.06 -0.67 8.77 16 37 H 0.09 1.32 7.66 -2.39 -0.02 1.31 16 38 H 0.10 1.31 7.66 -2.38 -0.02 1.30 16 39 H 0.17 1.26 6.29 -2.91 -0.02 1.25 16 40 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 41 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.42 4.79 8.81 -92.71 -0.82 3.98 16 43 H 0.41 6.32 8.93 -92.71 -0.83 5.50 16 Total: -1.00 -81.10 370.29 -2.38 -83.48 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -1.23 Total: 15.94 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.49 Total: 3.94 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -5.63 Total: -97.96 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -2.80 Total: -49.48 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.76 Total: -2.16 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -81.10 -2.38 -83.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583087573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.902 kcal (2) G-P(sol) polarization free energy of solvation -81.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds