Wall clock time and date at job start Fri Apr 10 2020 18:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00234 * 2 1 4 4 O 1.20825 * 120.00264 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99841 * 180.02562 * 3 2 1 6 6 O 1.42901 * 109.47170 * 179.97438 * 5 3 2 7 7 C 1.42905 * 114.00271 * 179.97438 * 6 5 3 8 8 C 1.52994 * 109.47010 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47595 * 65.00314 * 8 7 6 10 10 C 1.34774 * 119.99813 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00400 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99447 * 179.97438 * 10 9 8 13 13 C 1.40193 * 119.99510 * 179.97438 * 12 10 9 14 14 C 1.40403 * 125.97737 * 359.97438 * 13 12 10 15 15 C 1.35245 * 107.86997 * 179.71791 * 14 13 12 16 16 N 1.34965 * 107.85767 * 0.42139 * 15 14 13 17 17 C 1.46495 * 125.97869 * 179.83915 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71943 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31216 * 125.97104 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.47012 * 300.00264 * 1 2 3 28 28 H 1.09000 * 109.47343 * 59.99718 * 1 2 3 29 29 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 60.00275 * 5 3 2 31 31 H 1.09003 * 109.47549 * 299.99932 * 5 3 2 32 32 H 1.09000 * 109.46919 * 59.99949 * 7 6 5 33 33 H 1.09002 * 109.46909 * 300.00326 * 7 6 5 34 34 H 1.09001 * 109.46970 * 304.99942 * 8 7 6 35 35 H 1.08998 * 109.46850 * 185.00150 * 8 7 6 36 36 H 0.97000 * 119.99893 * 359.97438 * 9 8 7 37 37 H 0.96996 * 119.99831 * 359.97438 * 12 10 9 38 38 H 1.07997 * 126.06240 * 0.02562 * 14 13 12 39 39 H 1.07995 * 126.07276 * 180.26338 * 15 14 13 40 40 H 1.09000 * 109.47378 * 4.71603 * 17 16 15 41 41 H 1.09001 * 109.47153 * 244.71723 * 17 16 15 42 42 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 8 3.9716 2.6450 -0.0011 7 6 5.3883 2.8322 -0.0011 8 6 5.7049 4.3291 -0.0010 9 7 5.2350 4.9276 1.2509 10 6 5.4070 6.2456 1.4738 11 8 5.9526 6.9378 0.6362 12 7 4.9742 6.7963 2.6254 13 6 5.1536 8.1672 2.8575 14 6 5.7648 9.0790 1.9821 15 6 5.7366 10.2982 2.5667 16 7 5.1401 10.1665 3.7702 17 6 4.9055 11.2420 4.7368 18 6 3.4395 11.2968 5.0816 19 1 2.7513 10.6003 4.6259 20 6 2.9768 12.2366 5.9779 21 7 1.6966 12.2879 6.2747 22 14 4.1670 13.4417 6.7656 23 1 4.6907 12.8652 8.0300 24 1 5.2952 13.7024 5.8358 25 1 3.4615 14.7154 7.0572 26 7 4.7796 8.8226 3.9310 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7808 -0.8908 31 1 3.9565 0.7804 0.8891 32 1 5.8159 2.3701 -0.8909 33 1 5.8158 2.3707 0.8891 34 1 5.2034 4.8065 -0.8428 35 1 6.7817 4.4726 -0.0905 36 1 4.7994 4.3755 1.9189 37 1 4.5386 6.2441 3.2934 38 1 6.1790 8.8485 1.0117 39 1 6.1249 11.2141 2.1463 40 1 5.2125 12.1937 4.3031 41 1 5.4844 11.0510 5.6404 42 1 1.3704 12.9516 6.9023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596750113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:30 Heat of formation + Delta-G solvation = -58.746197 kcal Electronic energy + Delta-G solvation = -26199.439943 eV Core-core repulsion = 21990.094439 eV Total energy + Delta-G solvation = -4209.345504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.89273 -40.70239 -39.61617 -38.53204 -36.79994 -35.12754 -34.52675 -33.22226 -31.37169 -30.50113 -29.35872 -28.97714 -27.15813 -26.85698 -23.55463 -22.49943 -21.70292 -21.56057 -20.37281 -19.78744 -18.31478 -17.97982 -17.51523 -17.34852 -17.06507 -16.81942 -16.59693 -16.25313 -15.53126 -15.44934 -14.74488 -14.64839 -14.43928 -14.10874 -13.80680 -13.67496 -13.31925 -13.03745 -12.93914 -12.63876 -12.51743 -12.48117 -12.27797 -12.01226 -11.83203 -11.26806 -11.10972 -10.85518 -10.83727 -10.46348 -10.40385 -10.08358 -9.95069 -9.70174 -9.47065 -9.20646 -8.72616 -8.09970 -7.41083 -6.19178 -4.21180 1.72989 1.81527 2.41220 2.66190 3.12921 3.19293 3.24419 3.26321 3.32437 3.58360 3.87119 4.20587 4.26377 4.32462 4.42222 4.49280 4.54983 4.66736 4.67123 4.76445 4.81759 5.08725 5.09026 5.27774 5.45302 5.56864 5.76994 5.86352 6.21157 6.27920 6.38375 6.41921 6.53382 6.60696 6.77901 7.02934 7.29784 7.32852 7.50668 7.88671 7.96459 8.38936 8.63827 8.66447 8.91547 9.35832 10.93584 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.002009 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.496748 B =13932.227856 C =15431.784234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.456 3.544 4 O -0.479 6.479 5 C 0.073 3.927 6 O -0.364 6.364 7 C 0.050 3.950 8 C 0.144 3.856 9 N -0.740 5.740 10 C 0.715 3.285 11 O -0.570 6.570 12 N -0.643 5.643 13 C 0.280 3.720 14 C -0.282 4.282 15 C 0.051 3.949 16 N -0.322 5.322 17 C 0.233 3.767 18 C -0.533 4.533 19 H 0.086 0.914 20 C 0.075 3.925 21 N -0.888 5.888 22 Si 0.875 3.125 23 H -0.272 1.272 24 H -0.265 1.265 25 H -0.281 1.281 26 N -0.301 5.301 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.400 0.600 37 H 0.408 0.592 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -26.807 -13.468 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.297 3.703 4 O -0.363 6.363 5 C -0.005 4.005 6 O -0.283 6.283 7 C -0.027 4.027 8 C 0.020 3.980 9 N -0.398 5.398 10 C 0.414 3.586 11 O -0.446 6.446 12 N -0.293 5.293 13 C 0.025 3.975 14 C -0.313 4.313 15 C -0.099 4.099 16 N -0.103 5.103 17 C 0.113 3.887 18 C -0.571 4.571 19 H 0.104 0.896 20 C -0.129 4.129 21 N -0.526 5.526 22 Si 0.701 3.299 23 H -0.198 1.198 24 H -0.190 1.190 25 H -0.206 1.206 26 N -0.132 5.132 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.234 0.766 37 H 0.243 0.757 38 H 0.180 0.820 39 H 0.185 0.815 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.469 -25.595 -12.925 29.394 hybrid contribution 0.228 0.029 0.427 0.485 sum 6.697 -25.566 -12.498 29.234 Atomic orbital electron populations 1.23325 0.75373 1.03939 1.03014 1.86433 1.24076 1.32819 1.84534 1.23245 0.91478 0.81836 0.73758 1.90765 1.66662 1.36137 1.42772 1.21641 0.88527 0.85988 1.04351 1.88053 1.22681 1.21967 1.95626 1.22948 0.80766 0.96920 1.02025 1.21209 1.00131 0.89850 0.86813 1.44894 1.65748 1.07445 1.21668 1.15584 0.79448 0.81858 0.81691 1.90860 1.48027 1.60325 1.45367 1.41373 1.62123 1.06270 1.19543 1.18794 1.00234 0.83668 0.94762 1.21538 1.14869 0.90679 1.04262 1.22539 0.99696 0.99690 0.87932 1.48578 1.42021 1.05539 1.14189 1.20030 0.99479 0.82137 0.87006 1.21130 0.90437 1.18746 1.26811 0.89636 1.24845 0.95250 0.96966 0.95805 1.69879 1.13204 1.35289 1.34204 0.86879 0.81345 0.81153 0.80499 1.19751 1.18951 1.20640 1.77389 1.25288 0.89756 1.20748 0.91545 0.91633 0.87755 0.88685 0.88661 0.90702 0.91763 0.90257 0.89378 0.76595 0.75746 0.81990 0.81462 0.92931 0.94541 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.60 10.56 -39.25 -0.41 -3.01 16 3 C 0.46 3.99 8.03 36.00 0.29 4.28 16 4 O -0.48 -6.33 16.25 -25.48 -0.41 -6.75 16 5 C 0.07 0.38 6.53 36.00 0.24 0.61 16 6 O -0.36 -2.92 9.82 -55.19 -0.54 -3.46 16 7 C 0.05 0.25 6.07 37.15 0.23 0.47 16 8 C 0.14 1.18 6.06 -4.05 -0.02 1.16 16 9 N -0.74 -7.81 5.51 -65.23 -0.36 -8.17 16 10 C 0.71 10.95 8.53 -86.91 -0.74 10.20 16 11 O -0.57 -10.47 13.47 5.29 0.07 -10.40 16 12 N -0.64 -10.55 5.46 -15.50 -0.08 -10.63 16 13 C 0.28 5.83 8.11 -154.36 -1.25 4.58 16 14 C -0.28 -5.73 9.61 -39.83 -0.38 -6.11 16 15 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 16 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 17 C 0.23 5.64 5.33 -5.20 -0.03 5.61 16 18 C -0.53 -15.36 9.79 -34.44 -0.34 -15.70 16 19 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 20 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 21 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16 22 Si 0.88 20.49 27.47 -169.99 -4.67 15.82 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 N -0.30 -7.12 12.42 31.44 0.39 -6.73 16 27 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 3.36 8.49 -40.82 -0.35 3.01 16 37 H 0.41 5.55 8.84 -40.82 -0.36 5.19 16 38 H 0.16 3.22 5.91 -52.49 -0.31 2.91 16 39 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 40 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 41 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -39.47 370.47 -6.74 -46.21 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.60 Total: 6.34 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.24 Total: 9.23 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.49 Total: -59.56 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.30 Total: -23.62 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.47 -6.74 -46.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596750113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.539 kcal (2) G-P(sol) polarization free energy of solvation -39.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds