Wall clock time and date at job start Fri Apr 10 2020 18:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00234 * 2 1 4 4 O 1.20825 * 120.00264 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99841 * 180.02562 * 3 2 1 6 6 O 1.42901 * 109.47170 * 179.97438 * 5 3 2 7 7 C 1.42905 * 114.00271 * 179.97438 * 6 5 3 8 8 C 1.52994 * 109.47010 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47595 * 65.00314 * 8 7 6 10 10 C 1.34774 * 119.99813 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00400 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99447 * 179.97438 * 10 9 8 13 13 C 1.40193 * 119.99510 * 179.97438 * 12 10 9 14 14 C 1.40403 * 125.97737 * 359.97438 * 13 12 10 15 15 C 1.35245 * 107.86997 * 179.71791 * 14 13 12 16 16 N 1.34965 * 107.85767 * 0.42139 * 15 14 13 17 17 C 1.46495 * 125.97869 * 179.83915 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71943 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31216 * 125.97104 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.47012 * 300.00264 * 1 2 3 28 28 H 1.09000 * 109.47343 * 59.99718 * 1 2 3 29 29 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 60.00275 * 5 3 2 31 31 H 1.09003 * 109.47549 * 299.99932 * 5 3 2 32 32 H 1.09000 * 109.46919 * 59.99949 * 7 6 5 33 33 H 1.09002 * 109.46909 * 300.00326 * 7 6 5 34 34 H 1.09001 * 109.46970 * 304.99942 * 8 7 6 35 35 H 1.08998 * 109.46850 * 185.00150 * 8 7 6 36 36 H 0.97000 * 119.99893 * 359.97438 * 9 8 7 37 37 H 0.96996 * 119.99831 * 359.97438 * 12 10 9 38 38 H 1.07997 * 126.06240 * 0.02562 * 14 13 12 39 39 H 1.07995 * 126.07276 * 180.26338 * 15 14 13 40 40 H 1.09000 * 109.47378 * 4.71603 * 17 16 15 41 41 H 1.09001 * 109.47153 * 244.71723 * 17 16 15 42 42 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 8 3.9716 2.6450 -0.0011 7 6 5.3883 2.8322 -0.0011 8 6 5.7049 4.3291 -0.0010 9 7 5.2350 4.9276 1.2509 10 6 5.4070 6.2456 1.4738 11 8 5.9526 6.9378 0.6362 12 7 4.9742 6.7963 2.6254 13 6 5.1536 8.1672 2.8575 14 6 5.7648 9.0790 1.9821 15 6 5.7366 10.2982 2.5667 16 7 5.1401 10.1665 3.7702 17 6 4.9055 11.2420 4.7368 18 6 3.4395 11.2968 5.0816 19 1 2.7513 10.6003 4.6259 20 6 2.9768 12.2366 5.9779 21 7 1.6966 12.2879 6.2747 22 14 4.1670 13.4417 6.7656 23 1 4.6907 12.8652 8.0300 24 1 5.2952 13.7024 5.8358 25 1 3.4615 14.7154 7.0572 26 7 4.7796 8.8226 3.9310 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7808 -0.8908 31 1 3.9565 0.7804 0.8891 32 1 5.8159 2.3701 -0.8909 33 1 5.8158 2.3707 0.8891 34 1 5.2034 4.8065 -0.8428 35 1 6.7817 4.4726 -0.0905 36 1 4.7994 4.3755 1.9189 37 1 4.5386 6.2441 3.2934 38 1 6.1790 8.8485 1.0117 39 1 6.1249 11.2141 2.1463 40 1 5.2125 12.1937 4.3031 41 1 5.4844 11.0510 5.6404 42 1 1.3704 12.9516 6.9023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596750113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:29 Heat of formation + Delta-G solvation = -89.772934 kcal Electronic energy + Delta-G solvation = -26200.785363 eV Core-core repulsion = 21990.094439 eV Total energy + Delta-G solvation = -4210.690924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -42.22385 -41.52182 -40.88769 -39.08691 -37.49225 -36.35456 -35.73954 -35.17138 -33.11297 -31.28574 -30.89613 -29.71330 -28.77987 -27.48530 -24.84715 -23.84144 -22.75839 -22.28157 -21.89515 -21.27350 -19.32794 -19.07326 -18.79115 -18.23113 -18.03930 -17.90942 -17.42954 -17.21448 -16.72060 -16.57123 -16.19069 -15.82136 -15.56296 -15.33706 -14.87936 -14.76105 -14.48170 -14.34531 -14.12166 -13.84721 -13.75770 -13.60206 -13.07430 -12.97371 -12.94529 -12.64061 -12.33397 -12.16581 -11.86671 -11.81407 -11.64966 -11.51763 -11.46166 -11.14132 -10.87145 -10.74377 -10.19902 -9.72398 -9.02482 -8.36866 -6.47367 1.06172 1.09867 1.15366 1.35799 1.37369 1.40480 1.49802 1.71192 2.12807 2.29644 2.42198 2.89169 2.95575 3.18877 3.71544 3.93563 3.97516 4.21451 4.22922 4.23971 4.28021 4.29375 4.32975 4.53798 4.61190 4.66343 4.69759 4.76301 4.85538 4.93289 4.95057 5.14305 5.25045 5.29608 5.47570 5.81992 5.93592 6.00234 6.03156 6.43093 6.58206 6.69187 6.73480 7.12902 7.15972 7.43391 8.80377 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.002009 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.496748 B =13932.227856 C =15431.784234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.453 3.547 4 O -0.537 6.537 5 C 0.073 3.927 6 O -0.402 6.402 7 C 0.056 3.944 8 C 0.136 3.864 9 N -0.721 5.721 10 C 0.710 3.290 11 O -0.602 6.602 12 N -0.640 5.640 13 C 0.284 3.716 14 C -0.294 4.294 15 C 0.062 3.938 16 N -0.346 5.346 17 C 0.240 3.760 18 C -0.547 4.547 19 H 0.024 0.976 20 C 0.011 3.989 21 N -0.944 5.944 22 Si 0.959 3.041 23 H -0.265 1.265 24 H -0.228 1.228 25 H -0.278 1.278 26 N -0.352 5.352 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.412 0.588 37 H 0.419 0.581 38 H 0.168 0.832 39 H 0.211 0.789 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.973 -27.749 -13.886 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.297 3.703 4 O -0.425 6.425 5 C -0.003 4.003 6 O -0.323 6.323 7 C -0.019 4.019 8 C 0.013 3.987 9 N -0.378 5.378 10 C 0.410 3.590 11 O -0.480 6.480 12 N -0.292 5.292 13 C 0.028 3.972 14 C -0.325 4.325 15 C -0.086 4.086 16 N -0.128 5.128 17 C 0.120 3.880 18 C -0.585 4.585 19 H 0.042 0.958 20 C -0.187 4.187 21 N -0.583 5.583 22 Si 0.779 3.221 23 H -0.190 1.190 24 H -0.151 1.151 25 H -0.204 1.204 26 N -0.183 5.183 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.248 0.752 37 H 0.255 0.745 38 H 0.185 0.815 39 H 0.228 0.772 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.402 -26.650 -13.372 31.264 hybrid contribution -0.783 0.108 0.433 0.902 sum 8.619 -26.542 -12.939 30.760 Atomic orbital electron populations 1.23542 0.74681 1.05857 1.02283 1.86446 1.24894 1.32146 1.83940 1.24153 0.93054 0.81264 0.71839 1.90743 1.68134 1.37906 1.45759 1.21936 0.85762 0.85216 1.07394 1.87995 1.24340 1.23869 1.96063 1.23024 0.79723 0.94356 1.04807 1.21476 1.00518 0.92041 0.84669 1.44903 1.64489 1.05664 1.22701 1.15814 0.79182 0.83140 0.80887 1.90822 1.49507 1.61509 1.46163 1.41448 1.62309 1.04967 1.20450 1.19155 0.98696 0.85345 0.94005 1.21734 1.15298 0.90962 1.04477 1.23237 0.97815 1.01209 0.86368 1.48491 1.43667 1.05302 1.15299 1.19894 0.96134 0.83850 0.88139 1.21250 0.92402 1.17818 1.27044 0.95794 1.25974 0.97422 0.99227 0.96089 1.70062 1.16100 1.36729 1.35368 0.85574 0.79199 0.77469 0.79846 1.18985 1.15102 1.20361 1.77305 1.27605 0.90631 1.22731 0.92473 0.92280 0.84485 0.85342 0.85391 0.87577 0.89119 0.92444 0.88219 0.75166 0.74475 0.81458 0.77215 0.89828 0.93675 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -4.78 10.56 -51.37 -0.54 -5.32 16 3 C 0.45 7.64 8.03 71.23 0.57 8.21 16 4 O -0.54 -14.73 16.25 28.40 0.46 -14.27 16 5 C 0.07 0.57 6.53 71.23 0.47 1.04 16 6 O -0.40 -5.67 9.82 -129.90 -1.28 -6.95 16 7 C 0.06 0.38 6.07 71.98 0.44 0.82 16 8 C 0.14 2.03 6.06 86.38 0.52 2.55 16 9 N -0.72 -14.49 5.51 -478.54 -2.64 -17.13 16 10 C 0.71 21.60 8.53 179.05 1.53 23.13 16 11 O -0.60 -22.06 13.47 -4.00 -0.05 -22.12 16 12 N -0.64 -21.21 5.46 -321.22 -1.75 -22.96 16 13 C 0.28 11.97 8.11 133.31 1.08 13.05 16 14 C -0.29 -11.80 9.61 22.11 0.21 -11.59 16 15 C 0.06 2.38 11.44 83.52 0.96 3.33 16 16 N -0.35 -16.05 3.67 -351.85 -1.29 -17.34 16 17 C 0.24 11.37 5.33 85.63 0.46 11.83 16 18 C -0.55 -32.41 9.79 25.60 0.25 -32.16 16 19 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 20 C 0.01 0.66 5.47 84.65 0.46 1.12 16 21 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 22 Si 0.96 41.46 27.47 68.60 1.88 43.34 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.23 -8.50 6.54 99.48 0.65 -7.85 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 N -0.35 -17.07 12.42 -54.43 -0.68 -17.74 16 27 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 28 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 29 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.41 6.38 8.49 -92.71 -0.79 5.59 16 37 H 0.42 11.58 8.84 -92.71 -0.82 10.76 16 38 H 0.17 6.56 5.91 -2.91 -0.02 6.54 16 39 H 0.21 5.97 8.06 -2.91 -0.02 5.94 16 40 H 0.08 3.44 7.12 -2.39 -0.02 3.42 16 41 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 42 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -92.50 370.47 1.97 -90.52 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -0.59 Total: 26.22 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 8.14 Total: 22.84 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -6.05 Total: -134.27 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -1.41 Total: -48.66 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.34 kcal Total: -92.50 1.97 -90.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596750113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.750 kcal (2) G-P(sol) polarization free energy of solvation -92.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds