Wall clock time and date at job start Fri Apr 10 2020 18:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99676 * 2 1 4 4 H 1.48500 * 109.47059 * 274.87188 * 3 2 1 5 5 H 1.48499 * 109.47054 * 34.87021 * 3 2 1 6 6 H 1.48498 * 109.47116 * 154.87017 * 3 2 1 7 7 C 1.37870 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99995 * 5.06480 * 7 2 1 9 9 C 1.50701 * 120.00064 * 185.07078 * 7 2 1 10 10 N 1.46505 * 109.47063 * 174.78519 * 9 7 2 11 11 C 1.46498 * 120.00062 * 262.03427 * 10 9 7 12 12 C 1.50702 * 109.46820 * 269.99691 * 11 10 9 13 13 C 1.38674 * 120.42196 * 269.72213 * 12 11 10 14 14 C 1.38629 * 118.41926 * 179.78550 * 13 12 11 15 15 C 1.38229 * 119.16034 * 0.51102 * 14 13 12 16 16 N 1.31848 * 120.76659 * 359.72771 * 15 14 13 17 17 C 1.31889 * 121.72359 * 0.02562 * 16 15 14 18 18 C 1.34783 * 119.99849 * 82.03121 * 10 9 7 19 19 O 1.21680 * 119.99748 * 181.80478 * 18 10 9 20 20 C 1.46764 * 120.00055 * 1.80672 * 18 10 9 21 21 C 1.36550 * 126.84156 * 349.23536 * 20 18 10 22 22 N 1.33169 * 107.79530 * 179.86512 * 21 20 18 23 23 C 1.31361 * 109.76827 * 0.40212 * 22 21 20 24 24 N 1.34257 * 108.97990 * 359.50065 * 23 22 21 25 25 C 1.46995 * 111.33543 * 180.44889 * 24 23 22 26 26 C 1.54395 * 105.48821 * 342.94848 * 25 24 23 27 27 C 1.51651 * 141.06401 * 179.81943 * 23 22 21 28 28 H 0.96998 * 120.00514 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47387 * 54.78891 * 9 7 2 30 30 H 1.08997 * 109.47161 * 294.78535 * 9 7 2 31 31 H 1.09000 * 109.47249 * 29.99897 * 11 10 9 32 32 H 1.08996 * 109.47173 * 150.00421 * 11 10 9 33 33 H 1.07994 * 120.78922 * 0.02562 * 13 12 11 34 34 H 1.08001 * 120.41813 * 180.21884 * 14 13 12 35 35 H 1.08005 * 119.61509 * 179.74915 * 15 14 13 36 36 H 1.08001 * 119.61482 * 180.02562 * 17 16 15 37 37 H 1.07999 * 126.10263 * 0.06067 * 21 20 18 38 38 H 1.08996 * 110.24788 * 223.94104 * 25 24 23 39 39 H 1.09007 * 110.24302 * 101.95002 * 25 24 23 40 40 H 1.08996 * 110.98810 * 267.52555 * 26 25 24 41 41 H 1.09001 * 110.98358 * 143.72761 * 26 25 24 42 42 H 1.08997 * 110.48437 * 314.93043 * 27 23 22 43 43 H 1.09006 * 110.47799 * 77.42150 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3935 2.1059 -1.3950 5 1 1.5017 2.6208 0.8004 6 1 3.5943 1.4128 0.5946 7 6 2.0046 -1.1939 -0.0005 8 1 1.4677 -2.1275 -0.0835 9 6 3.5071 -1.1965 0.1148 10 7 3.9868 -2.5771 0.2158 11 6 4.2963 -3.1509 1.5278 12 6 5.7427 -2.8905 1.8614 13 6 6.7222 -3.8027 1.4988 14 6 8.0400 -3.5193 1.8224 15 6 8.3306 -2.3503 2.5005 16 7 7.3726 -1.5080 2.8338 17 6 6.1089 -1.7426 2.5379 18 6 4.1434 -3.3193 -0.8983 19 8 4.5103 -4.4762 -0.8119 20 6 3.8713 -2.7321 -2.2155 21 6 3.2662 -1.5345 -2.4689 22 7 3.2158 -1.3754 -3.7901 23 6 3.7515 -2.4176 -4.3838 24 7 4.1767 -3.2821 -3.4487 25 6 4.7970 -4.4671 -4.0585 26 6 4.3338 -4.4631 -5.5313 27 6 4.0519 -2.9621 -5.7669 28 1 -0.4851 0.8400 -0.0004 29 1 3.8042 -0.6426 1.0054 30 1 3.9401 -0.7251 -0.7674 31 1 3.6604 -2.6913 2.2845 32 1 4.1164 -4.2257 1.5059 33 1 6.4649 -4.7104 0.9733 34 1 8.8291 -4.2055 1.5525 35 1 9.3543 -2.1241 2.7599 36 1 5.3517 -1.0289 2.8271 37 1 2.8974 -0.8388 -1.7296 38 1 4.4539 -5.3723 -3.5577 39 1 5.8833 -4.3940 -4.0046 40 1 3.4271 -5.0549 -5.6570 41 1 5.1253 -4.8198 -6.1904 42 1 3.1906 -2.8341 -6.4226 43 1 4.9278 -2.4691 -6.1889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596964026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:38 Heat of formation + Delta-G solvation = 101.496309 kcal Electronic energy + Delta-G solvation = -28016.874581 eV Core-core repulsion = 24257.619728 eV Total energy + Delta-G solvation = -3759.254853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09882 -40.15696 -38.82733 -36.29908 -35.41744 -33.28231 -32.27550 -31.62637 -31.38587 -29.03254 -27.98342 -27.43020 -25.82515 -23.49629 -22.89789 -22.38827 -21.89140 -21.19504 -19.79445 -18.63376 -17.24527 -16.96069 -16.74927 -16.41378 -15.98570 -15.80610 -15.28048 -14.98283 -14.43668 -14.10624 -13.92069 -13.68117 -13.54301 -13.45416 -13.21709 -13.03999 -12.97709 -12.81925 -12.52844 -12.42904 -11.95022 -11.64728 -11.46751 -11.17754 -11.13560 -10.91474 -10.46102 -10.32058 -9.89528 -9.71167 -9.65047 -9.36866 -9.22260 -9.17762 -8.89545 -8.78484 -8.02119 -7.80822 -6.30417 -4.33074 1.16915 1.40103 1.88173 2.85461 3.19111 3.24699 3.29835 3.35802 3.68080 3.94860 4.01265 4.09951 4.20733 4.45323 4.54700 4.65738 4.77545 4.90385 5.00404 5.02482 5.08905 5.16346 5.23424 5.34533 5.42706 5.48417 5.53795 5.65758 5.75784 5.82156 5.90043 5.92558 6.05363 6.23230 6.24928 6.32695 6.45148 6.54657 6.65816 6.80591 7.14102 7.27370 7.32057 7.49598 7.93606 8.06191 8.26183 8.49847 8.73253 8.80588 9.24665 10.81010 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008267 B = 0.006221 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.116961 B = 4499.579163 C = 6974.649560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.084 3.916 3 Si 0.855 3.145 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.188 3.812 10 N -0.574 5.574 11 C 0.164 3.836 12 C -0.148 4.148 13 C -0.055 4.055 14 C -0.180 4.180 15 C 0.091 3.909 16 N -0.489 5.489 17 C 0.113 3.887 18 C 0.601 3.399 19 O -0.578 6.578 20 C -0.074 4.074 21 C 0.054 3.946 22 N -0.492 5.492 23 C 0.190 3.810 24 N -0.452 5.452 25 C 0.105 3.895 26 C -0.130 4.130 27 C -0.040 4.040 28 H 0.270 0.730 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 -7.559 -4.596 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.122 4.122 3 Si 0.680 3.320 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.101 0.899 9 C 0.068 3.932 10 N -0.302 5.302 11 C 0.040 3.960 12 C -0.151 4.151 13 C -0.081 4.081 14 C -0.200 4.200 15 C -0.066 4.066 16 N -0.197 5.197 17 C -0.044 4.044 18 C 0.391 3.609 19 O -0.460 6.460 20 C -0.187 4.187 21 C -0.098 4.098 22 N -0.212 5.212 23 C -0.072 4.072 24 N -0.136 5.136 25 C -0.017 4.017 26 C -0.168 4.168 27 C -0.079 4.079 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.251 0.749 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.063 -6.791 -4.347 15.352 hybrid contribution 0.358 -0.569 -0.006 0.672 sum 13.422 -7.360 -4.352 15.914 Atomic orbital electron populations 1.69871 1.06251 1.27588 1.47284 1.24860 0.94785 0.98779 0.93762 0.87169 0.80829 0.84253 0.79749 1.18888 1.20352 1.18280 1.21282 0.88970 0.95598 1.52812 0.89876 1.20531 0.96010 0.78054 0.98645 1.47538 1.63377 1.15224 1.04092 1.20194 0.89833 1.00608 0.85349 1.21441 0.98068 0.96117 0.99450 1.21667 0.92273 0.99122 0.95069 1.22116 0.97280 0.99273 1.01350 1.22711 0.98622 0.90474 0.94785 1.67703 1.01079 1.31422 1.19530 1.22797 0.93051 0.94804 0.93785 1.16733 0.76675 0.84635 0.82876 1.90666 1.50658 1.17170 1.87543 1.20382 1.14866 0.98540 0.84925 1.25186 0.96297 0.96019 0.92271 1.69943 1.20934 1.23062 1.07246 1.24518 1.00740 0.89377 0.92544 1.46033 1.43735 1.18010 1.05801 1.22318 0.98359 0.87794 0.93183 1.22762 1.03207 0.96358 0.94491 1.20653 1.03512 0.93748 0.89976 0.91979 0.94100 0.93983 0.88478 0.89218 0.84463 0.85189 0.83182 0.82540 0.74906 0.88859 0.89716 0.89461 0.88283 0.88454 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.73 13.96 55.43 0.77 -23.96 16 2 C 0.08 2.21 5.25 -17.82 -0.09 2.11 16 3 Si 0.86 19.29 27.09 -169.99 -4.60 14.69 16 4 H -0.26 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.26 -5.46 6.38 56.52 0.36 -5.10 16 7 C -0.55 -13.93 7.44 -34.44 -0.26 -14.19 16 8 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 9 C 0.19 4.10 3.77 -5.19 -0.02 4.08 16 10 N -0.57 -11.65 2.47 -177.95 -0.44 -12.09 16 11 C 0.16 2.79 5.54 -5.19 -0.03 2.76 16 12 C -0.15 -2.32 5.48 -104.48 -0.57 -2.89 16 13 C -0.05 -0.80 9.86 -39.28 -0.39 -1.19 16 14 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 15 C 0.09 1.18 11.18 -17.55 -0.20 0.99 16 16 N -0.49 -7.56 10.36 -13.25 -0.14 -7.70 16 17 C 0.11 1.76 10.86 -17.55 -0.19 1.57 16 18 C 0.60 12.92 7.57 -12.81 -0.10 12.82 16 19 O -0.58 -12.55 16.41 5.21 0.09 -12.46 16 20 C -0.07 -1.61 6.95 -82.04 -0.57 -2.18 16 21 C 0.05 1.24 9.18 -17.58 -0.16 1.08 16 22 N -0.49 -10.77 11.21 -10.29 -0.12 -10.89 16 23 C 0.19 3.40 8.56 -154.93 -1.33 2.07 16 24 N -0.45 -8.25 3.64 -108.28 -0.39 -8.64 16 25 C 0.11 1.35 7.78 -3.04 -0.02 1.33 16 26 C -0.13 -1.15 7.18 -25.19 -0.18 -1.33 16 27 C -0.04 -0.44 6.86 -26.61 -0.18 -0.63 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.04 0.85 6.92 -51.93 -0.36 0.49 16 30 H 0.04 0.95 4.50 -51.93 -0.23 0.72 16 31 H 0.10 1.55 8.02 -51.93 -0.42 1.13 16 32 H 0.09 1.52 7.35 -51.93 -0.38 1.13 16 33 H 0.14 2.02 7.79 -52.49 -0.41 1.61 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.24 5.69 2.49 -52.49 -0.13 5.56 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -33.10 355.77 -9.49 -42.59 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.33 Total: 9.34 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -4.69 Total: 3.76 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.31 Total: -63.27 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.60 Total: 14.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.10 -9.49 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.082 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds