Wall clock time and date at job start Fri Apr 10 2020 18:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99676 * 2 1 4 4 H 1.48500 * 109.47059 * 274.87188 * 3 2 1 5 5 H 1.48499 * 109.47054 * 34.87021 * 3 2 1 6 6 H 1.48498 * 109.47116 * 154.87017 * 3 2 1 7 7 C 1.37870 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99995 * 5.06480 * 7 2 1 9 9 C 1.50701 * 120.00064 * 185.07078 * 7 2 1 10 10 N 1.46505 * 109.47063 * 174.78519 * 9 7 2 11 11 C 1.46498 * 120.00062 * 262.03427 * 10 9 7 12 12 C 1.50702 * 109.46820 * 269.99691 * 11 10 9 13 13 C 1.38674 * 120.42196 * 269.72213 * 12 11 10 14 14 C 1.38629 * 118.41926 * 179.78550 * 13 12 11 15 15 C 1.38229 * 119.16034 * 0.51102 * 14 13 12 16 16 N 1.31848 * 120.76659 * 359.72771 * 15 14 13 17 17 C 1.31889 * 121.72359 * 0.02562 * 16 15 14 18 18 C 1.34783 * 119.99849 * 82.03121 * 10 9 7 19 19 O 1.21680 * 119.99748 * 181.80478 * 18 10 9 20 20 C 1.46764 * 120.00055 * 1.80672 * 18 10 9 21 21 C 1.36550 * 126.84156 * 349.23536 * 20 18 10 22 22 N 1.33169 * 107.79530 * 179.86512 * 21 20 18 23 23 C 1.31361 * 109.76827 * 0.40212 * 22 21 20 24 24 N 1.34257 * 108.97990 * 359.50065 * 23 22 21 25 25 C 1.46995 * 111.33543 * 180.44889 * 24 23 22 26 26 C 1.54395 * 105.48821 * 342.94848 * 25 24 23 27 27 C 1.51651 * 141.06401 * 179.81943 * 23 22 21 28 28 H 0.96998 * 120.00514 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47387 * 54.78891 * 9 7 2 30 30 H 1.08997 * 109.47161 * 294.78535 * 9 7 2 31 31 H 1.09000 * 109.47249 * 29.99897 * 11 10 9 32 32 H 1.08996 * 109.47173 * 150.00421 * 11 10 9 33 33 H 1.07994 * 120.78922 * 0.02562 * 13 12 11 34 34 H 1.08001 * 120.41813 * 180.21884 * 14 13 12 35 35 H 1.08005 * 119.61509 * 179.74915 * 15 14 13 36 36 H 1.08001 * 119.61482 * 180.02562 * 17 16 15 37 37 H 1.07999 * 126.10263 * 0.06067 * 21 20 18 38 38 H 1.08996 * 110.24788 * 223.94104 * 25 24 23 39 39 H 1.09007 * 110.24302 * 101.95002 * 25 24 23 40 40 H 1.08996 * 110.98810 * 267.52555 * 26 25 24 41 41 H 1.09001 * 110.98358 * 143.72761 * 26 25 24 42 42 H 1.08997 * 110.48437 * 314.93043 * 27 23 22 43 43 H 1.09006 * 110.47799 * 77.42150 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3935 2.1059 -1.3950 5 1 1.5017 2.6208 0.8004 6 1 3.5943 1.4128 0.5946 7 6 2.0046 -1.1939 -0.0005 8 1 1.4677 -2.1275 -0.0835 9 6 3.5071 -1.1965 0.1148 10 7 3.9868 -2.5771 0.2158 11 6 4.2963 -3.1509 1.5278 12 6 5.7427 -2.8905 1.8614 13 6 6.7222 -3.8027 1.4988 14 6 8.0400 -3.5193 1.8224 15 6 8.3306 -2.3503 2.5005 16 7 7.3726 -1.5080 2.8338 17 6 6.1089 -1.7426 2.5379 18 6 4.1434 -3.3193 -0.8983 19 8 4.5103 -4.4762 -0.8119 20 6 3.8713 -2.7321 -2.2155 21 6 3.2662 -1.5345 -2.4689 22 7 3.2158 -1.3754 -3.7901 23 6 3.7515 -2.4176 -4.3838 24 7 4.1767 -3.2821 -3.4487 25 6 4.7970 -4.4671 -4.0585 26 6 4.3338 -4.4631 -5.5313 27 6 4.0519 -2.9621 -5.7669 28 1 -0.4851 0.8400 -0.0004 29 1 3.8042 -0.6426 1.0054 30 1 3.9401 -0.7251 -0.7674 31 1 3.6604 -2.6913 2.2845 32 1 4.1164 -4.2257 1.5059 33 1 6.4649 -4.7104 0.9733 34 1 8.8291 -4.2055 1.5525 35 1 9.3543 -2.1241 2.7599 36 1 5.3517 -1.0289 2.8271 37 1 2.8974 -0.8388 -1.7296 38 1 4.4539 -5.3723 -3.5577 39 1 5.8833 -4.3940 -4.0046 40 1 3.4271 -5.0549 -5.6570 41 1 5.1253 -4.8198 -6.1904 42 1 3.1906 -2.8341 -6.4226 43 1 4.9278 -2.4691 -6.1889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596964026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:36 Heat of formation + Delta-G solvation = 80.280192 kcal Electronic energy + Delta-G solvation = -28017.794581 eV Core-core repulsion = 24257.619728 eV Total energy + Delta-G solvation = -3760.174853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.53108 -41.37441 -40.31619 -37.65105 -36.89967 -34.98023 -33.77581 -32.87919 -32.61308 -30.54662 -29.61955 -28.57972 -27.15878 -24.92135 -24.41900 -23.67052 -23.09331 -22.54728 -21.12835 -20.13221 -19.19098 -18.26637 -18.02840 -17.62271 -17.42765 -17.07723 -16.69097 -16.44694 -16.11098 -15.57535 -15.35839 -14.95299 -14.81461 -14.68549 -14.54557 -14.29393 -14.18660 -14.16740 -13.94928 -13.56479 -13.40081 -12.90838 -12.74112 -12.71662 -12.51112 -12.09859 -12.06478 -11.96449 -11.76462 -11.42224 -10.89645 -10.85248 -10.71615 -10.61912 -10.50421 -10.03330 -9.66240 -9.36297 -8.35753 -6.41688 0.06155 0.28590 0.34025 1.36494 1.41593 1.46252 1.53100 1.82912 2.28284 2.28926 2.32127 2.88234 2.93259 2.99890 3.41720 3.49913 3.62137 3.80712 3.81748 3.89363 3.95625 4.04415 4.06191 4.37563 4.40375 4.46274 4.53342 4.54738 4.59978 4.66341 4.67872 4.80393 4.83023 4.84169 4.98205 5.10915 5.13051 5.15203 5.32402 5.33344 5.51642 5.73242 5.75679 6.05401 6.09695 6.38141 6.63100 6.93923 6.96953 7.12674 7.21277 8.79907 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008267 B = 0.006221 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.116961 B = 4499.579163 C = 6974.649560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.035 3.965 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.536 4.536 8 H 0.034 0.966 9 C 0.201 3.799 10 N -0.576 5.576 11 C 0.163 3.837 12 C -0.159 4.159 13 C -0.065 4.065 14 C -0.169 4.169 15 C 0.092 3.908 16 N -0.508 5.508 17 C 0.102 3.898 18 C 0.595 3.405 19 O -0.586 6.586 20 C -0.099 4.099 21 C 0.030 3.970 22 N -0.536 5.536 23 C 0.198 3.802 24 N -0.457 5.457 25 C 0.090 3.910 26 C -0.109 4.109 27 C -0.038 4.038 28 H 0.272 0.728 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.159 0.841 37 H 0.214 0.786 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.114 0.886 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.559 -8.175 -6.121 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.166 4.166 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.574 4.574 8 H 0.053 0.947 9 C 0.079 3.921 10 N -0.304 5.304 11 C 0.040 3.960 12 C -0.162 4.162 13 C -0.091 4.091 14 C -0.189 4.189 15 C -0.065 4.065 16 N -0.217 5.217 17 C -0.055 4.055 18 C 0.385 3.615 19 O -0.470 6.470 20 C -0.213 4.213 21 C -0.123 4.123 22 N -0.256 5.256 23 C -0.065 4.065 24 N -0.140 5.140 25 C -0.029 4.029 26 C -0.147 4.147 27 C -0.077 4.077 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.183 0.817 35 H 0.204 0.796 36 H 0.176 0.824 37 H 0.230 0.770 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.165 0.835 42 H 0.133 0.867 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.579 -7.446 -5.855 19.094 hybrid contribution -0.677 -0.533 0.396 0.948 sum 15.902 -7.979 -5.459 18.610 Atomic orbital electron populations 1.70006 1.08164 1.28574 1.49653 1.25611 0.95354 1.02312 0.93337 0.86199 0.80780 0.79683 0.79588 1.19316 1.19924 1.15488 1.21247 0.90769 0.93617 1.51773 0.94725 1.20279 0.93373 0.79294 0.99115 1.47583 1.62999 1.14650 1.05123 1.20295 0.91499 1.00200 0.83966 1.21229 0.97094 0.97046 1.00817 1.21757 0.93267 0.98805 0.95307 1.22461 0.97014 0.99526 0.99850 1.23355 0.99657 0.89913 0.93545 1.67742 1.01236 1.32482 1.20257 1.22833 0.93598 0.94845 0.94206 1.16880 0.76691 0.84685 0.83262 1.90632 1.51359 1.17273 1.87761 1.20420 1.15781 0.98838 0.86305 1.24832 0.97738 0.96682 0.92999 1.69840 1.23233 1.25657 1.06920 1.25811 0.97658 0.87761 0.95318 1.46439 1.43367 1.19559 1.04639 1.22830 0.99276 0.85468 0.95342 1.22870 1.05089 0.94748 0.91950 1.21079 1.05444 0.94974 0.86178 0.91912 0.92492 0.93957 0.87989 0.89592 0.84997 0.81685 0.79616 0.82391 0.77003 0.89693 0.87909 0.88824 0.83468 0.86743 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.96 21.44 0.30 -54.71 16 2 C 0.04 1.92 5.25 84.65 0.44 2.37 16 3 Si 0.92 40.65 27.09 68.60 1.86 42.51 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.23 -9.22 6.38 99.48 0.63 -8.58 16 7 C -0.54 -28.70 7.44 25.60 0.19 -28.51 16 8 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 9 C 0.20 9.00 3.77 85.63 0.32 9.32 16 10 N -0.58 -24.17 2.47 -835.12 -2.06 -26.23 16 11 C 0.16 5.72 5.54 85.63 0.47 6.19 16 12 C -0.16 -4.95 5.48 -19.77 -0.11 -5.06 16 13 C -0.06 -1.82 9.86 22.47 0.22 -1.59 16 14 C -0.17 -3.73 10.11 22.36 0.23 -3.50 16 15 C 0.09 2.11 11.18 84.69 0.95 3.06 16 16 N -0.51 -14.81 10.36 -195.84 -2.03 -16.84 16 17 C 0.10 3.10 10.86 84.67 0.92 4.02 16 18 C 0.59 26.37 7.57 86.47 0.65 27.03 16 19 O -0.59 -25.98 16.41 -4.28 -0.07 -26.06 16 20 C -0.10 -4.43 6.95 39.93 0.28 -4.15 16 21 C 0.03 1.43 9.18 84.10 0.77 2.21 16 22 N -0.54 -23.96 11.21 -186.47 -2.09 -26.05 16 23 C 0.20 6.87 8.56 138.43 1.19 8.06 16 24 N -0.46 -16.45 3.64 -496.48 -1.81 -18.26 16 25 C 0.09 2.11 7.78 86.76 0.68 2.79 16 26 C -0.11 -1.44 7.18 31.59 0.23 -1.21 16 27 C -0.04 -0.71 6.86 30.67 0.21 -0.50 16 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.06 2.36 6.92 -2.39 -0.02 2.35 16 30 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 31 H 0.10 3.38 8.02 -2.39 -0.02 3.36 16 32 H 0.09 3.03 7.35 -2.39 -0.02 3.01 16 33 H 0.13 3.81 7.79 -2.91 -0.02 3.79 16 34 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.16 4.57 8.06 -2.91 -0.02 4.55 16 37 H 0.21 10.90 2.49 -2.91 -0.01 10.89 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.15 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -78.04 355.77 2.71 -75.32 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.97 Total: 29.79 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 7.64 Total: 20.51 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -7.69 Total: -142.08 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.07 Total: -26.06 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.86 Total: 42.51 kcal Total: -78.04 2.71 -75.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.605 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds