Wall clock time and date at job start Fri Apr 10 2020 18:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47075 * 299.99658 * 3 2 1 6 6 H 1.48500 * 109.46893 * 59.99807 * 3 2 1 7 7 C 1.37881 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99618 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47044 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47377 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54356 * 68.37325 * 11 10 9 13 13 O 1.42104 * 110.54274 * 291.62270 * 11 10 9 14 14 N 1.65600 * 104.45154 * 179.97438 * 11 10 9 15 15 C 1.46503 * 119.99870 * 65.00014 * 14 11 10 16 16 C 1.52993 * 109.47151 * 165.67995 * 15 14 11 17 17 H 1.09004 * 110.37023 * 57.72311 * 16 15 14 18 18 C 1.54385 * 110.41229 * 295.37158 * 16 15 14 19 19 C 1.54249 * 105.06295 * 217.36906 * 18 16 15 20 20 C 1.54382 * 105.06175 * 0.02562 * 19 18 16 21 21 N 1.48556 * 104.59405 * 23.85273 * 20 19 18 22 22 C 1.46892 * 111.00183 * 200.96179 * 21 20 19 23 23 C 1.53004 * 109.47134 * 279.17676 * 22 21 20 24 24 F 1.39903 * 109.47059 * 299.99581 * 23 22 21 25 25 F 1.39897 * 109.47265 * 59.99639 * 23 22 21 26 26 H 0.97007 * 119.99796 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46976 * 59.99828 * 9 7 2 28 28 H 1.08996 * 109.47029 * 299.99984 * 9 7 2 29 29 H 1.09001 * 109.46859 * 59.99577 * 10 9 7 30 30 H 1.09004 * 109.46852 * 300.00083 * 10 9 7 31 31 H 0.97001 * 120.00016 * 244.99957 * 14 11 10 32 32 H 1.08996 * 109.46803 * 285.67910 * 15 14 11 33 33 H 1.09006 * 109.47138 * 45.67630 * 15 14 11 34 34 H 1.09007 * 110.32152 * 336.26852 * 18 16 15 35 35 H 1.09006 * 110.32289 * 98.36928 * 18 16 15 36 36 H 1.09006 * 110.32714 * 118.89558 * 19 18 16 37 37 H 1.09003 * 110.32519 * 241.00030 * 19 18 16 38 38 H 1.08996 * 110.41094 * 142.63043 * 20 19 18 39 39 H 1.09001 * 110.41020 * 264.95391 * 20 19 18 40 40 H 1.09005 * 109.47286 * 39.16903 * 22 21 20 41 41 H 1.08999 * 109.47833 * 159.17385 * 22 21 20 42 42 H 1.09005 * 109.47272 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3382 -5.2331 0.0011 12 8 0.6656 -5.4199 -1.2367 13 8 0.6629 -5.4195 1.2374 14 7 2.5204 -6.3927 0.0018 15 6 3.4179 -6.5230 1.1524 16 6 4.1615 -7.8576 1.0706 17 1 4.7172 -7.9256 0.1353 18 6 3.1704 -9.0347 1.1948 19 6 3.9167 -10.1017 2.0217 20 6 5.2959 -9.4793 2.3283 21 7 5.0747 -8.0134 2.2323 22 6 6.3406 -7.3037 2.0053 23 6 7.0780 -7.1378 3.3356 24 9 6.2830 -6.4017 4.2208 25 9 7.3414 -8.3980 3.8832 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6039 0.8923 30 1 2.8725 -3.6047 -0.8877 31 1 2.6185 -6.9858 -0.7595 32 1 4.1381 -5.7048 1.1458 33 1 2.8358 -6.4872 2.0733 34 1 2.2672 -8.7158 1.7151 35 1 2.9203 -9.4248 0.2081 36 1 3.3800 -10.3066 2.9481 37 1 4.0329 -11.0173 1.4418 38 1 5.6201 -9.7498 3.3331 39 1 6.0314 -9.8036 1.5921 40 1 6.9601 -7.8772 1.3157 41 1 6.1355 -6.3219 1.5787 42 1 8.0176 -6.6116 3.1671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599396532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:50 Heat of formation + Delta-G solvation = -182.414345 kcal Electronic energy + Delta-G solvation = -26399.938539 eV Core-core repulsion = 22177.294067 eV Total energy + Delta-G solvation = -4222.644473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 5.08 seconds Orbital eigenvalues (eV) -49.07652 -47.08209 -39.61897 -36.58613 -35.47838 -35.10978 -33.89179 -33.17130 -31.16131 -29.67341 -28.52309 -25.60384 -24.96009 -23.13096 -21.71747 -21.24453 -20.70273 -18.94410 -17.87567 -17.54246 -17.34070 -16.96862 -16.55919 -16.16187 -15.67416 -15.47238 -15.16729 -14.78905 -14.55744 -14.41898 -14.21390 -13.85908 -13.56942 -13.41171 -13.35443 -12.84632 -12.64359 -12.51603 -12.30724 -12.00620 -11.75503 -11.60438 -11.58869 -11.52662 -11.48916 -11.21117 -11.09350 -10.99744 -10.95682 -10.73619 -10.40792 -10.38593 -9.79740 -9.47965 -9.03321 -8.98630 -8.50651 -6.12531 -4.18013 0.78499 2.99443 3.25261 3.32466 3.35561 3.42293 3.61711 3.94840 4.12909 4.23067 4.25148 4.36409 4.41505 4.58154 4.73570 4.74906 4.82197 4.92071 5.00455 5.11471 5.16261 5.22831 5.29000 5.44993 5.49707 5.62441 5.66041 5.67609 5.73332 5.83689 5.89059 5.98791 6.41206 6.47659 6.48630 7.05859 7.30448 7.36636 7.80529 8.17465 8.85534 9.46775 10.98549 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003246 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.723403 B = 8624.923267 C =10270.325355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.595 3.405 12 O -0.968 6.968 13 O -0.964 6.964 14 N -1.127 6.127 15 C 0.129 3.871 16 C 0.060 3.940 17 H 0.063 0.937 18 C -0.122 4.122 19 C -0.125 4.125 20 C 0.032 3.968 21 N -0.499 5.499 22 C -0.015 4.015 23 C 0.272 3.728 24 F -0.194 7.194 25 F -0.208 7.208 26 H 0.264 0.736 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.411 0.589 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.599 -19.747 2.743 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.692 3.308 12 O -0.958 6.958 13 O -0.954 6.954 14 N -0.885 5.885 15 C 0.002 3.998 16 C -0.050 4.050 17 H 0.081 0.919 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.096 4.096 21 N -0.224 5.224 22 C -0.144 4.144 23 C 0.218 3.782 24 F -0.175 7.175 25 F -0.189 7.189 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.243 0.757 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.248 -19.514 3.448 24.407 hybrid contribution 1.570 0.696 -1.008 1.991 sum 15.818 -18.818 2.440 24.704 Atomic orbital electron populations 1.69967 1.06113 1.27083 1.49641 1.25073 0.94972 0.99553 0.94921 0.86415 0.79901 0.83204 0.77764 1.19673 1.20823 1.20776 1.21035 0.93067 0.89767 1.52035 0.92020 1.18972 0.92718 0.90578 0.98928 1.30440 1.13738 1.18106 1.09997 1.05519 0.74602 0.76566 0.74126 1.93554 1.71620 1.85376 1.45266 1.93549 1.71241 1.84911 1.45671 1.55772 1.53194 1.52346 1.27157 1.21124 0.93002 0.96291 0.89427 1.22817 0.93936 0.95814 0.92415 0.91930 1.22373 0.98754 0.94141 1.00704 1.22315 0.95319 0.97944 1.00738 1.23306 0.97109 0.86782 1.02399 1.65211 1.10062 1.08712 1.38383 1.23508 0.92724 1.02723 0.95483 1.21893 0.93595 0.76964 0.85755 1.93031 1.76686 1.76697 1.71085 1.92951 1.94722 1.43508 1.87742 0.92580 0.94839 0.94754 0.86284 0.86191 0.75664 0.91835 0.88996 0.89886 0.90949 0.90679 0.91236 0.89075 0.93568 0.91153 0.87353 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -11.01 6.01 37.16 0.22 -10.78 16 11 S 2.59 45.12 5.46 -107.50 -0.59 44.53 16 12 O -0.97 -19.65 18.08 -57.54 -1.04 -20.69 16 13 O -0.96 -19.84 17.51 -57.54 -1.01 -20.85 16 14 N -1.13 -13.62 5.64 -10.61 -0.06 -13.68 16 15 C 0.13 1.42 5.66 -4.04 -0.02 1.39 16 16 C 0.06 0.53 2.33 -66.06 -0.15 0.37 16 17 H 0.06 0.47 8.00 -51.93 -0.42 0.05 16 18 C -0.12 -1.07 6.31 -25.35 -0.16 -1.23 16 19 C -0.13 -0.95 7.00 -25.35 -0.18 -1.13 16 20 C 0.03 0.25 5.67 -2.18 -0.01 0.24 16 21 N -0.50 -4.49 4.91 -222.12 -1.09 -5.58 16 22 C -0.01 -0.10 5.19 -3.83 -0.02 -0.12 16 23 C 0.27 2.02 5.60 37.16 0.21 2.23 16 24 F -0.19 -2.14 17.26 2.25 0.04 -2.10 16 25 F -0.21 -1.87 15.22 2.25 0.03 -1.84 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 30 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 31 H 0.41 4.04 8.61 -34.47 -0.30 3.74 16 32 H 0.06 0.62 7.26 -51.93 -0.38 0.24 16 33 H 0.09 1.18 7.66 -51.93 -0.40 0.78 16 34 H 0.08 0.87 7.82 -51.93 -0.41 0.46 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.78 6.93 -51.93 -0.36 0.42 16 39 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 40 H 0.07 0.36 7.63 -51.93 -0.40 -0.04 16 41 H 0.11 0.67 7.07 -51.93 -0.37 0.30 16 42 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -35.95 361.38 -9.55 -45.50 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.34 Total: 0.42 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -0.66 Total: -21.55 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.41 Total: -44.96 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -2.05 Total: -41.54 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 45.12 SS G_CDS: -0.59 Total: 44.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.95 -9.55 -45.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599396532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.912 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.08 seconds