Wall clock time and date at job start Fri Apr 10 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47075 * 299.99658 * 3 2 1 6 6 H 1.48500 * 109.46893 * 59.99807 * 3 2 1 7 7 C 1.37881 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99618 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47044 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47377 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54356 * 68.37325 * 11 10 9 13 13 O 1.42104 * 110.54274 * 291.62270 * 11 10 9 14 14 N 1.65600 * 104.45154 * 179.97438 * 11 10 9 15 15 C 1.46503 * 119.99870 * 65.00014 * 14 11 10 16 16 C 1.52993 * 109.47151 * 165.67995 * 15 14 11 17 17 H 1.09004 * 110.37023 * 57.72311 * 16 15 14 18 18 C 1.54385 * 110.41229 * 295.37158 * 16 15 14 19 19 C 1.54249 * 105.06295 * 217.36906 * 18 16 15 20 20 C 1.54382 * 105.06175 * 0.02562 * 19 18 16 21 21 N 1.48556 * 104.59405 * 23.85273 * 20 19 18 22 22 C 1.46892 * 111.00183 * 200.96179 * 21 20 19 23 23 C 1.53004 * 109.47134 * 279.17676 * 22 21 20 24 24 F 1.39903 * 109.47059 * 299.99581 * 23 22 21 25 25 F 1.39897 * 109.47265 * 59.99639 * 23 22 21 26 26 H 0.97007 * 119.99796 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46976 * 59.99828 * 9 7 2 28 28 H 1.08996 * 109.47029 * 299.99984 * 9 7 2 29 29 H 1.09001 * 109.46859 * 59.99577 * 10 9 7 30 30 H 1.09004 * 109.46852 * 300.00083 * 10 9 7 31 31 H 0.97001 * 120.00016 * 244.99957 * 14 11 10 32 32 H 1.08996 * 109.46803 * 285.67910 * 15 14 11 33 33 H 1.09006 * 109.47138 * 45.67630 * 15 14 11 34 34 H 1.09007 * 110.32152 * 336.26852 * 18 16 15 35 35 H 1.09006 * 110.32289 * 98.36928 * 18 16 15 36 36 H 1.09006 * 110.32714 * 118.89558 * 19 18 16 37 37 H 1.09003 * 110.32519 * 241.00030 * 19 18 16 38 38 H 1.08996 * 110.41094 * 142.63043 * 20 19 18 39 39 H 1.09001 * 110.41020 * 264.95391 * 20 19 18 40 40 H 1.09005 * 109.47286 * 39.16903 * 22 21 20 41 41 H 1.08999 * 109.47833 * 159.17385 * 22 21 20 42 42 H 1.09005 * 109.47272 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3382 -5.2331 0.0011 12 8 0.6656 -5.4199 -1.2367 13 8 0.6629 -5.4195 1.2374 14 7 2.5204 -6.3927 0.0018 15 6 3.4179 -6.5230 1.1524 16 6 4.1615 -7.8576 1.0706 17 1 4.7172 -7.9256 0.1353 18 6 3.1704 -9.0347 1.1948 19 6 3.9167 -10.1017 2.0217 20 6 5.2959 -9.4793 2.3283 21 7 5.0747 -8.0134 2.2323 22 6 6.3406 -7.3037 2.0053 23 6 7.0780 -7.1378 3.3356 24 9 6.2830 -6.4017 4.2208 25 9 7.3414 -8.3980 3.8832 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6039 0.8923 30 1 2.8725 -3.6047 -0.8877 31 1 2.6185 -6.9858 -0.7595 32 1 4.1381 -5.7048 1.1458 33 1 2.8358 -6.4872 2.0733 34 1 2.2672 -8.7158 1.7151 35 1 2.9203 -9.4248 0.2081 36 1 3.3800 -10.3066 2.9481 37 1 4.0329 -11.0173 1.4418 38 1 5.6201 -9.7498 3.3331 39 1 6.0314 -9.8036 1.5921 40 1 6.9601 -7.8772 1.3157 41 1 6.1355 -6.3219 1.5787 42 1 8.0176 -6.6116 3.1671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599396532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:42:45 Heat of formation + Delta-G solvation = -210.714038 kcal Electronic energy + Delta-G solvation = -26401.165706 eV Core-core repulsion = 22177.294067 eV Total energy + Delta-G solvation = -4223.871639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -49.70835 -47.74844 -40.27038 -38.13837 -37.00870 -36.11196 -35.87801 -33.74914 -33.10758 -30.45653 -29.09915 -27.57723 -25.78239 -23.71154 -23.56963 -21.89691 -21.41216 -20.27993 -19.10437 -18.50517 -18.16188 -18.06442 -17.65535 -17.27309 -17.02250 -16.51982 -16.34717 -16.18052 -15.73494 -15.31273 -14.98504 -14.87910 -14.58773 -14.46087 -14.22688 -14.09797 -13.71204 -13.48914 -13.46819 -13.19007 -13.11307 -13.07648 -12.94134 -12.81997 -12.74698 -12.35109 -12.24625 -12.16845 -12.09234 -11.95945 -11.72361 -11.56989 -11.38466 -11.14878 -10.64440 -10.32592 -9.56853 -8.24900 -6.38711 -0.66540 1.42005 1.42755 1.55836 1.82592 2.39041 2.75406 2.84818 3.08853 3.09269 3.30243 3.46805 3.56583 3.68320 3.73088 3.99634 4.01747 4.15492 4.17716 4.22366 4.28531 4.38446 4.56156 4.57556 4.62741 4.74468 4.77446 4.81966 4.93975 4.99472 5.10088 5.23280 5.26616 5.29405 5.30276 5.69975 5.79978 5.91258 6.07423 6.16038 6.75476 7.31535 8.87629 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003246 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.723403 B = 8624.923267 C =10270.325355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.587 4.587 11 S 2.623 3.377 12 O -0.998 6.998 13 O -0.999 6.999 14 N -1.103 6.103 15 C 0.120 3.880 16 C 0.066 3.934 17 H 0.088 0.912 18 C -0.127 4.127 19 C -0.123 4.123 20 C 0.035 3.965 21 N -0.523 5.523 22 C -0.017 4.017 23 C 0.261 3.739 24 F -0.220 7.220 25 F -0.219 7.219 26 H 0.267 0.733 27 H 0.007 0.993 28 H 0.005 0.995 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.426 0.574 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.715 -20.199 1.872 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.719 3.281 12 O -0.988 6.988 13 O -0.989 6.989 14 N -0.866 5.866 15 C -0.006 4.006 16 C -0.043 4.043 17 H 0.106 0.894 18 C -0.165 4.165 19 C -0.161 4.161 20 C -0.092 4.092 21 N -0.248 5.248 22 C -0.146 4.146 23 C 0.207 3.793 24 F -0.201 7.201 25 F -0.201 7.201 26 H 0.076 0.924 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.262 0.738 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.379 -19.978 2.568 26.604 hybrid contribution 0.619 0.745 -0.704 1.197 sum 17.998 -19.233 1.864 26.407 Atomic orbital electron populations 1.70115 1.08110 1.28216 1.51043 1.26131 0.95848 1.03929 0.94455 0.85259 0.79248 0.78005 0.77700 1.17742 1.20428 1.20547 1.21558 0.94037 0.90726 1.51240 0.90446 1.18838 0.93694 0.93208 0.96347 1.30324 1.12779 1.16385 1.12428 1.04366 0.74625 0.76495 0.72605 1.93506 1.73052 1.85843 1.46414 1.93508 1.72737 1.85431 1.47220 1.55144 1.52383 1.50790 1.28243 1.21319 0.92840 0.98762 0.87689 1.22748 0.93950 0.94058 0.93587 0.89409 1.22411 0.98002 0.94727 1.01362 1.22308 0.95050 0.98363 1.00361 1.23270 0.97389 0.86280 1.02275 1.65133 1.11383 1.09512 1.38797 1.23629 0.92116 1.03330 0.95544 1.22475 0.94992 0.76558 0.85250 1.92977 1.77651 1.77339 1.72141 1.92926 1.94793 1.44394 1.87985 0.92449 0.97480 0.97644 0.84073 0.83582 0.73764 0.89857 0.91296 0.92338 0.89492 0.91786 0.89461 0.90220 0.91866 0.88716 0.86478 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.94 13.29 21.45 0.28 -56.66 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -29.45 9.11 25.60 0.23 -29.21 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 0.93 4.98 29.85 0.15 1.08 16 10 C -0.59 -21.38 6.01 71.98 0.43 -20.95 16 11 S 2.62 90.61 5.46 -56.49 -0.31 90.30 16 12 O -1.00 -40.54 18.08 -127.65 -2.31 -42.85 16 13 O -1.00 -41.99 17.51 -127.65 -2.23 -44.23 16 14 N -1.10 -24.63 5.64 -187.49 -1.06 -25.69 16 15 C 0.12 2.42 5.66 86.38 0.49 2.91 16 16 C 0.07 1.00 2.33 45.06 0.10 1.10 16 17 H 0.09 0.92 8.00 -2.38 -0.02 0.90 16 18 C -0.13 -2.02 6.31 31.49 0.20 -1.82 16 19 C -0.12 -1.68 7.00 31.49 0.22 -1.46 16 20 C 0.04 0.48 5.67 86.45 0.49 0.97 16 21 N -0.52 -8.29 4.91 -856.66 -4.20 -12.49 16 22 C -0.02 -0.18 5.19 86.31 0.45 0.27 16 23 C 0.26 3.29 5.60 71.98 0.40 3.70 16 24 F -0.22 -4.65 17.26 44.97 0.78 -3.87 16 25 F -0.22 -3.61 15.22 44.97 0.68 -2.93 16 26 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 30 H 0.15 4.52 8.14 -2.39 -0.02 4.50 16 31 H 0.43 7.26 8.61 -96.74 -0.83 6.42 16 32 H 0.08 1.37 7.26 -2.39 -0.02 1.35 16 33 H 0.07 1.75 7.66 -2.38 -0.02 1.73 16 34 H 0.06 1.22 7.82 -2.38 -0.02 1.20 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.28 6.93 -2.39 -0.02 1.26 16 39 H 0.06 0.65 7.67 -2.39 -0.02 0.63 16 40 H 0.09 0.56 7.63 -2.38 -0.02 0.54 16 41 H 0.12 1.02 7.07 -2.39 -0.02 1.01 16 42 H 0.15 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -80.08 361.38 -2.51 -82.59 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.20 Total: 14.04 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 3.63 Total: -43.25 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -4.98 Total: -94.84 kcal Atomic # 8 Polarization: -82.54 SS G_CDS: -4.54 Total: -87.08 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 1.46 Total: -6.80 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 90.61 SS G_CDS: -0.31 Total: 90.30 kcal Total: -80.08 -2.51 -82.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599396532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.119 kcal (2) G-P(sol) polarization free energy of solvation -80.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds