Wall clock time and date at job start Fri Apr 10 2020 18:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99920 * 2 1 4 4 C 1.53005 * 109.47057 * 76.07106 * 3 2 1 5 5 N 1.46497 * 109.46855 * 180.02562 * 4 3 2 6 6 S 1.65601 * 119.99922 * 165.27360 * 5 4 3 7 7 O 1.42097 * 104.28010 * 180.79248 * 6 5 4 8 8 O 1.42100 * 104.27484 * 308.64962 * 6 5 4 9 9 C 1.81401 * 104.44982 * 64.72179 * 6 5 4 10 10 C 1.52997 * 109.47425 * 182.46229 * 9 6 5 11 11 C 1.50705 * 115.54984 * 58.96414 * 10 9 6 12 12 H 1.08000 * 120.00111 * 272.02001 * 11 10 9 13 13 C 1.37875 * 119.99871 * 92.01342 * 11 10 9 14 14 N 1.31516 * 120.00193 * 4.13868 * 13 11 10 15 15 Si 1.86802 * 120.00167 * 184.13148 * 13 11 10 16 16 H 1.48501 * 109.46849 * 60.00741 * 15 13 11 17 17 H 1.48497 * 109.46995 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47168 * 300.00611 * 15 13 11 19 19 C 1.52998 * 117.49959 * 273.29918 * 10 9 6 20 20 C 1.52995 * 117.50114 * 204.63783 * 10 9 6 21 21 C 1.46900 * 110.99806 * 236.04852 * 2 1 3 22 22 C 1.53006 * 109.47203 * 202.13220 * 21 2 1 23 23 F 1.39898 * 109.46822 * 292.86900 * 22 21 2 24 24 F 1.39904 * 109.46717 * 52.86014 * 22 21 2 25 25 H 1.09004 * 109.46926 * 63.62307 * 1 2 3 26 26 H 1.09004 * 109.47171 * 183.62303 * 1 2 3 27 27 H 1.09002 * 109.46796 * 303.62360 * 1 2 3 28 28 H 1.08997 * 109.47848 * 316.06470 * 3 2 1 29 29 H 1.09003 * 109.46986 * 196.06802 * 3 2 1 30 30 H 1.08993 * 109.47099 * 59.99475 * 4 3 2 31 31 H 1.08996 * 109.46804 * 299.99336 * 4 3 2 32 32 H 0.96998 * 120.00551 * 344.99603 * 5 4 3 33 33 H 1.09003 * 109.46986 * 302.46266 * 9 6 5 34 34 H 1.09003 * 109.47169 * 62.45843 * 9 6 5 35 35 H 0.96999 * 120.00575 * 185.00436 * 14 13 11 36 36 H 1.08997 * 117.49906 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.49917 * 145.01525 * 19 10 9 38 38 H 1.09005 * 117.49957 * 214.97626 * 20 10 9 39 39 H 1.08994 * 117.50048 * 359.97438 * 20 10 9 40 40 H 1.08998 * 109.47530 * 322.13286 * 21 2 1 41 41 H 1.08998 * 109.47443 * 82.13633 * 21 2 1 42 42 H 1.08997 * 109.47219 * 172.86216 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8540 1.9720 1.4001 5 7 2.3784 3.3399 1.3999 6 16 2.0329 4.3593 2.6584 7 8 2.6792 5.5762 2.3113 8 8 0.6193 4.2911 2.7866 9 6 2.8397 3.5968 4.0932 10 6 2.5393 4.4224 5.3457 11 6 1.0797 4.5776 5.6873 12 1 0.5092 5.3905 5.2629 13 6 0.4726 3.6817 6.5416 14 7 1.1847 2.7407 7.1221 15 14 -1.3614 3.8046 6.8747 16 1 -2.1075 3.6470 5.6004 17 1 -1.7654 2.7339 7.8210 18 1 -1.6690 5.1308 7.4677 19 6 3.4661 5.5998 5.6549 20 6 3.5307 4.3300 6.5073 21 6 1.9954 -0.7659 -1.1376 22 6 3.4257 -1.2153 -0.8319 23 9 4.2636 -0.0965 -0.7741 24 9 3.4522 -1.8817 0.3979 25 1 -0.3633 0.4566 -0.9207 26 1 -0.3634 -1.0256 0.0649 27 1 -0.3633 0.5691 0.8558 28 1 1.4348 1.9759 -0.7130 29 1 3.0476 1.3567 -0.2844 30 1 2.4147 1.3675 2.1130 31 1 0.8019 1.9867 1.6845 32 1 2.9314 3.6473 0.6647 33 1 2.4614 2.5833 4.2267 34 1 3.9168 3.5639 3.9294 35 1 0.7471 2.0666 7.6653 36 1 4.2902 5.7859 4.9662 37 1 3.0203 6.4864 6.1057 38 1 3.1273 4.3819 7.5187 39 1 4.3968 3.6808 6.3794 40 1 1.3683 -1.6410 -1.3079 41 1 1.9944 -0.1391 -2.0294 42 1 3.7710 -1.8877 -1.6171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599520012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:43:17 Heat of formation + Delta-G solvation = -143.065201 kcal Electronic energy + Delta-G solvation = -26906.419104 eV Core-core repulsion = 22685.480938 eV Total energy + Delta-G solvation = -4220.938166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.08991 -47.07865 -38.13523 -36.68189 -36.22618 -35.10620 -34.74650 -31.94249 -30.42752 -28.45844 -28.16956 -25.39939 -25.29206 -22.84739 -21.38343 -21.09779 -19.64396 -18.63183 -17.86218 -17.52862 -16.95621 -16.76048 -16.43806 -15.82790 -15.41515 -15.08739 -14.88202 -14.69572 -14.41981 -14.15837 -13.83947 -13.68955 -13.51271 -13.42684 -13.03063 -12.73385 -12.50002 -12.23584 -12.04786 -11.97785 -11.74713 -11.59523 -11.26983 -11.17954 -11.05398 -10.92625 -10.83426 -10.69283 -10.49443 -10.37398 -10.01973 -9.61208 -9.14944 -9.04042 -8.73981 -8.40854 -8.01682 -6.06461 -4.17871 1.10899 3.21777 3.37634 3.39593 3.49120 3.55272 3.74665 3.98821 4.18586 4.44484 4.55173 4.62849 4.78328 4.92485 5.02680 5.05751 5.11211 5.22339 5.25346 5.28607 5.31810 5.47982 5.57417 5.77819 5.87829 5.92996 5.98698 6.18073 6.33151 6.42768 6.59585 6.66263 6.67456 6.78786 7.07074 7.26667 7.32443 7.58249 7.86506 8.25950 8.88068 9.53149 11.00286 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.003831 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.787140 B = 7307.719121 C = 7822.874536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.032 3.968 4 C 0.123 3.877 5 N -1.134 6.134 6 S 2.611 3.389 7 O -0.978 6.978 8 O -0.944 6.944 9 C -0.556 4.556 10 C 0.034 3.966 11 C -0.510 4.510 12 H 0.068 0.932 13 C 0.082 3.918 14 N -0.876 5.876 15 Si 0.889 3.111 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.214 4.214 20 C -0.126 4.126 21 C 0.001 3.999 22 C 0.268 3.732 23 F -0.205 7.205 24 F -0.193 7.193 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.408 0.592 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -9.877 -17.662 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.097 4.097 4 C -0.004 4.004 5 N -0.890 5.890 6 S 2.708 3.292 7 O -0.969 6.969 8 O -0.934 6.934 9 C -0.689 4.689 10 C 0.031 3.969 11 C -0.547 4.547 12 H 0.087 0.913 13 C -0.123 4.123 14 N -0.512 5.512 15 Si 0.715 3.285 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.251 4.251 20 C -0.165 4.165 21 C -0.128 4.128 22 C 0.214 3.786 23 F -0.186 7.186 24 F -0.174 7.174 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.240 0.760 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.087 -9.501 -16.964 19.687 hybrid contribution -0.474 -0.197 -0.511 0.724 sum 2.613 -9.698 -17.474 20.155 Atomic orbital electron populations 1.22549 0.85825 1.02787 1.01646 1.61757 1.09056 1.14083 1.41067 1.22672 1.02147 0.87617 0.97243 1.21096 1.00224 0.81712 0.97366 1.55938 1.68164 1.25382 1.39564 1.05019 0.75590 0.73705 0.74886 1.93503 1.78037 1.42598 1.82714 1.93545 1.28465 1.85782 1.85566 1.29989 1.09968 1.12783 1.16188 1.18326 0.93162 0.94445 0.90944 1.20498 0.91762 1.13981 1.28497 0.91344 1.24924 0.98176 0.95179 0.94019 1.70017 1.35156 1.14858 1.31141 0.86687 0.85509 0.77802 0.78461 1.19278 1.21270 1.19984 1.23245 1.02799 0.93777 1.05303 1.22471 0.99362 0.97159 0.97529 1.23246 0.94917 1.00704 0.93946 1.21977 0.89960 0.82058 0.84603 1.92908 1.73922 1.54851 1.96913 1.93023 1.97061 1.80376 1.46967 0.95188 0.90924 0.89940 0.93531 0.88566 0.90940 0.90173 0.76037 0.85519 0.88062 0.92784 0.91054 0.89623 0.88771 0.91807 0.87747 0.91379 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.31 60.07 0.56 0.74 16 2 N -0.54 -5.49 4.40 -242.91 -1.07 -6.56 16 3 C 0.03 0.36 4.92 -3.82 -0.02 0.34 16 4 C 0.12 1.75 6.24 -4.04 -0.03 1.72 16 5 N -1.13 -17.24 5.89 -10.62 -0.06 -17.30 16 6 S 2.61 53.19 5.23 -107.50 -0.56 52.63 16 7 O -0.98 -21.68 18.08 -57.54 -1.04 -22.72 16 8 O -0.94 -22.58 16.47 -57.54 -0.95 -23.53 16 9 C -0.56 -11.76 5.95 37.16 0.22 -11.54 16 10 C 0.03 0.83 1.62 -155.66 -0.25 0.58 16 11 C -0.51 -14.15 7.48 -34.44 -0.26 -14.40 16 12 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 13 C 0.08 2.25 5.41 -17.82 -0.10 2.16 16 14 N -0.88 -24.43 12.06 55.43 0.67 -23.76 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 19 C -0.21 -4.84 9.94 -26.69 -0.27 -5.10 16 20 C -0.13 -2.98 8.91 -26.70 -0.24 -3.22 16 21 C 0.00 0.01 5.38 -3.82 -0.02 -0.01 16 22 C 0.27 2.05 5.59 37.16 0.21 2.26 16 23 F -0.20 -2.05 14.75 2.25 0.03 -2.02 16 24 F -0.19 -2.16 17.13 2.25 0.04 -2.12 16 25 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 27 H 0.08 0.88 6.79 -51.93 -0.35 0.53 16 28 H 0.05 0.49 7.99 -51.93 -0.42 0.07 16 29 H 0.10 1.04 5.32 -51.93 -0.28 0.76 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.23 6.45 -51.93 -0.34 0.89 16 32 H 0.41 5.16 8.62 -34.47 -0.30 4.87 16 33 H 0.13 2.69 8.14 -51.92 -0.42 2.27 16 34 H 0.10 1.84 8.11 -51.92 -0.42 1.42 16 35 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 38 H 0.09 2.39 7.76 -51.93 -0.40 1.98 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.10 0.52 7.84 -51.93 -0.41 0.11 16 41 H 0.07 0.38 7.96 -51.93 -0.41 -0.03 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -34.50 363.66 -8.91 -43.41 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.24 Total: 6.25 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -0.19 Total: -26.48 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.46 Total: -47.62 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.99 Total: -46.25 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.07 Total: -4.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 53.19 SS G_CDS: -0.56 Total: 52.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.50 -8.91 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599520012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.650 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds