Wall clock time and date at job start Fri Apr 10 2020 18:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99920 * 2 1 4 4 C 1.53005 * 109.47057 * 76.07106 * 3 2 1 5 5 N 1.46497 * 109.46855 * 180.02562 * 4 3 2 6 6 S 1.65601 * 119.99922 * 165.27360 * 5 4 3 7 7 O 1.42097 * 104.28010 * 180.79248 * 6 5 4 8 8 O 1.42100 * 104.27484 * 308.64962 * 6 5 4 9 9 C 1.81401 * 104.44982 * 64.72179 * 6 5 4 10 10 C 1.52997 * 109.47425 * 182.46229 * 9 6 5 11 11 C 1.50705 * 115.54984 * 58.96414 * 10 9 6 12 12 H 1.08000 * 120.00111 * 272.02001 * 11 10 9 13 13 C 1.37875 * 119.99871 * 92.01342 * 11 10 9 14 14 N 1.31516 * 120.00193 * 4.13868 * 13 11 10 15 15 Si 1.86802 * 120.00167 * 184.13148 * 13 11 10 16 16 H 1.48501 * 109.46849 * 60.00741 * 15 13 11 17 17 H 1.48497 * 109.46995 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47168 * 300.00611 * 15 13 11 19 19 C 1.52998 * 117.49959 * 273.29918 * 10 9 6 20 20 C 1.52995 * 117.50114 * 204.63783 * 10 9 6 21 21 C 1.46900 * 110.99806 * 236.04852 * 2 1 3 22 22 C 1.53006 * 109.47203 * 202.13220 * 21 2 1 23 23 F 1.39898 * 109.46822 * 292.86900 * 22 21 2 24 24 F 1.39904 * 109.46717 * 52.86014 * 22 21 2 25 25 H 1.09004 * 109.46926 * 63.62307 * 1 2 3 26 26 H 1.09004 * 109.47171 * 183.62303 * 1 2 3 27 27 H 1.09002 * 109.46796 * 303.62360 * 1 2 3 28 28 H 1.08997 * 109.47848 * 316.06470 * 3 2 1 29 29 H 1.09003 * 109.46986 * 196.06802 * 3 2 1 30 30 H 1.08993 * 109.47099 * 59.99475 * 4 3 2 31 31 H 1.08996 * 109.46804 * 299.99336 * 4 3 2 32 32 H 0.96998 * 120.00551 * 344.99603 * 5 4 3 33 33 H 1.09003 * 109.46986 * 302.46266 * 9 6 5 34 34 H 1.09003 * 109.47169 * 62.45843 * 9 6 5 35 35 H 0.96999 * 120.00575 * 185.00436 * 14 13 11 36 36 H 1.08997 * 117.49906 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.49917 * 145.01525 * 19 10 9 38 38 H 1.09005 * 117.49957 * 214.97626 * 20 10 9 39 39 H 1.08994 * 117.50048 * 359.97438 * 20 10 9 40 40 H 1.08998 * 109.47530 * 322.13286 * 21 2 1 41 41 H 1.08998 * 109.47443 * 82.13633 * 21 2 1 42 42 H 1.08997 * 109.47219 * 172.86216 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8540 1.9720 1.4001 5 7 2.3784 3.3399 1.3999 6 16 2.0329 4.3593 2.6584 7 8 2.6792 5.5762 2.3113 8 8 0.6193 4.2911 2.7866 9 6 2.8397 3.5968 4.0932 10 6 2.5393 4.4224 5.3457 11 6 1.0797 4.5776 5.6873 12 1 0.5092 5.3905 5.2629 13 6 0.4726 3.6817 6.5416 14 7 1.1847 2.7407 7.1221 15 14 -1.3614 3.8046 6.8747 16 1 -2.1075 3.6470 5.6004 17 1 -1.7654 2.7339 7.8210 18 1 -1.6690 5.1308 7.4677 19 6 3.4661 5.5998 5.6549 20 6 3.5307 4.3300 6.5073 21 6 1.9954 -0.7659 -1.1376 22 6 3.4257 -1.2153 -0.8319 23 9 4.2636 -0.0965 -0.7741 24 9 3.4522 -1.8817 0.3979 25 1 -0.3633 0.4566 -0.9207 26 1 -0.3634 -1.0256 0.0649 27 1 -0.3633 0.5691 0.8558 28 1 1.4348 1.9759 -0.7130 29 1 3.0476 1.3567 -0.2844 30 1 2.4147 1.3675 2.1130 31 1 0.8019 1.9867 1.6845 32 1 2.9314 3.6473 0.6647 33 1 2.4614 2.5833 4.2267 34 1 3.9168 3.5639 3.9294 35 1 0.7471 2.0666 7.6653 36 1 4.2902 5.7859 4.9662 37 1 3.0203 6.4864 6.1057 38 1 3.1273 4.3819 7.5187 39 1 4.3968 3.6808 6.3794 40 1 1.3683 -1.6410 -1.3079 41 1 1.9944 -0.1391 -2.0294 42 1 3.7710 -1.8877 -1.6171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599520012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:43:14 Heat of formation + Delta-G solvation = -169.052463 kcal Electronic energy + Delta-G solvation = -26907.545996 eV Core-core repulsion = 22685.480938 eV Total energy + Delta-G solvation = -4222.065058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.74523 -47.76805 -38.94634 -38.55276 -37.94621 -36.80411 -35.95626 -34.02973 -31.10777 -29.91341 -29.36640 -27.45906 -26.11649 -23.63754 -22.94170 -22.20925 -21.46940 -20.24396 -18.58108 -18.44511 -18.33220 -18.09752 -17.60607 -17.05452 -16.81964 -16.65440 -16.22187 -15.93509 -15.80354 -15.46058 -14.95521 -14.85014 -14.66585 -14.48780 -14.13711 -13.82597 -13.66756 -13.38622 -13.35244 -13.16602 -13.11106 -12.92197 -12.91141 -12.86156 -12.80112 -12.41673 -12.38715 -12.25927 -12.16791 -11.86049 -11.51732 -11.38750 -11.02317 -10.50533 -10.43298 -9.85532 -9.44465 -8.16307 -6.31604 -0.51975 1.39400 1.41880 1.51170 1.96439 2.42233 2.77124 2.93405 3.09904 3.10983 3.38020 3.47463 3.52924 3.68480 3.83743 3.99795 4.04291 4.11291 4.28073 4.40775 4.48506 4.51126 4.53604 4.56430 4.61051 4.63553 4.72028 4.84187 4.89967 4.99009 5.05720 5.08009 5.24277 5.46240 5.67927 5.72764 5.88370 5.92317 6.16157 6.23531 6.74919 7.40441 8.89784 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.003831 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.787140 B = 7307.719121 C = 7822.874536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.556 5.556 3 C 0.040 3.960 4 C 0.117 3.883 5 N -1.114 6.114 6 S 2.630 3.370 7 O -0.996 6.996 8 O -0.985 6.985 9 C -0.556 4.556 10 C 0.002 3.998 11 C -0.527 4.527 12 H 0.049 0.951 13 C 0.043 3.957 14 N -0.894 5.894 15 Si 0.932 3.068 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.270 1.270 19 C -0.201 4.201 20 C -0.125 4.125 21 C 0.001 3.999 22 C 0.256 3.744 23 F -0.221 7.221 24 F -0.217 7.217 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.423 0.577 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -10.914 -19.526 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.281 5.281 3 C -0.089 4.089 4 C -0.010 4.010 5 N -0.875 5.875 6 S 2.727 3.273 7 O -0.987 6.987 8 O -0.975 6.975 9 C -0.689 4.689 10 C -0.001 4.001 11 C -0.564 4.564 12 H 0.068 0.932 13 C -0.160 4.160 14 N -0.530 5.530 15 Si 0.757 3.243 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.195 1.195 19 C -0.238 4.238 20 C -0.164 4.164 21 C -0.128 4.128 22 C 0.202 3.798 23 F -0.202 7.202 24 F -0.199 7.199 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.258 0.742 33 H 0.139 0.861 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.146 0.854 41 H 0.105 0.895 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.784 -10.530 -18.828 21.902 hybrid contribution -0.663 0.104 0.016 0.671 sum 3.121 -10.427 -18.812 21.734 Atomic orbital electron populations 1.22539 0.85546 1.03458 1.01249 1.61696 1.09539 1.13505 1.43375 1.22551 1.02839 0.88520 0.94989 1.21238 0.99135 0.80874 0.99742 1.55375 1.68233 1.25394 1.38514 1.04168 0.74493 0.73571 0.75115 1.93468 1.78050 1.44115 1.83047 1.93495 1.31108 1.86493 1.86370 1.29901 1.12183 1.11717 1.15066 1.18480 0.92128 0.96619 0.92835 1.20667 0.93606 1.13589 1.28560 0.93236 1.25480 1.01235 0.95184 0.94082 1.70070 1.36131 1.15251 1.31589 0.86009 0.81843 0.78310 0.78105 1.20135 1.19861 1.19484 1.23296 1.02658 0.92966 1.04918 1.22384 0.99609 0.98339 0.96084 1.23407 0.94690 1.01389 0.93264 1.22631 0.90347 0.82239 0.84543 1.92868 1.74484 1.55909 1.96953 1.92972 1.97186 1.80857 1.48876 0.93898 0.89467 0.92293 0.92698 0.87880 0.91233 0.91753 0.74172 0.86089 0.84841 0.92647 0.88380 0.90063 0.91185 0.89791 0.85448 0.89471 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.31 127.69 1.19 1.52 16 2 N -0.56 -10.43 4.40 -922.43 -4.06 -14.49 16 3 C 0.04 0.84 4.92 86.31 0.42 1.26 16 4 C 0.12 3.26 6.24 86.38 0.54 3.80 16 5 N -1.11 -32.71 5.89 -187.50 -1.10 -33.82 16 6 S 2.63 106.25 5.23 -56.49 -0.30 105.95 16 7 O -1.00 -43.27 18.08 -127.65 -2.31 -45.58 16 8 O -0.99 -47.97 16.47 -127.65 -2.10 -50.07 16 9 C -0.56 -23.11 5.95 71.98 0.43 -22.68 16 10 C 0.00 0.07 1.62 -52.93 -0.09 -0.01 16 11 C -0.53 -29.68 7.48 25.60 0.19 -29.49 16 12 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 13 C 0.04 2.38 5.41 84.65 0.46 2.84 16 14 N -0.89 -50.24 12.06 21.45 0.26 -49.98 16 15 Si 0.93 44.98 29.54 68.60 2.03 47.00 16 16 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 19 C -0.20 -8.89 9.94 30.62 0.30 -8.58 16 20 C -0.13 -5.84 8.91 30.62 0.27 -5.57 16 21 C 0.00 0.01 5.38 86.31 0.46 0.48 16 22 C 0.26 3.23 5.59 71.98 0.40 3.63 16 23 F -0.22 -3.96 14.75 44.97 0.66 -3.30 16 24 F -0.22 -4.53 17.13 44.97 0.77 -3.76 16 25 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 27 H 0.06 1.27 6.79 -2.39 -0.02 1.26 16 28 H 0.05 1.04 7.99 -2.39 -0.02 1.02 16 29 H 0.10 2.01 5.32 -2.39 -0.01 2.00 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.01 6.45 -2.39 -0.02 2.00 16 32 H 0.42 9.95 8.62 -96.75 -0.83 9.11 16 33 H 0.12 5.15 8.14 -2.39 -0.02 5.13 16 34 H 0.13 4.56 8.11 -2.39 -0.02 4.54 16 35 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 36 H 0.10 3.77 8.14 -2.39 -0.02 3.76 16 37 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 38 H 0.07 3.58 7.76 -2.38 -0.02 3.56 16 39 H 0.08 3.51 8.14 -2.39 -0.02 3.50 16 40 H 0.13 0.80 7.84 -2.39 -0.02 0.78 16 41 H 0.09 0.66 7.96 -2.39 -0.02 0.64 16 42 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -74.76 363.66 -1.36 -76.12 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.20 Total: 24.72 kcal Atomic # 6 Polarization: -57.40 SS G_CDS: 4.59 Total: -52.81 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.91 Total: -98.29 kcal Atomic # 8 Polarization: -91.24 SS G_CDS: -4.41 Total: -95.65 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 1.43 Total: -7.06 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 106.25 SS G_CDS: -0.30 Total: 105.95 kcal Total: -74.76 -1.36 -76.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599520012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.928 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds