Wall clock time and date at job start Fri Apr 10 2020 18:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 N 1.46496 * 109.47191 * 119.99575 * 2 1 3 5 5 C 1.46494 * 120.00324 * 294.94097 * 4 2 1 6 6 C 1.50704 * 109.47434 * 263.04350 * 5 4 2 7 7 H 1.08005 * 119.99588 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00289 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00151 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00002 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47016 * 89.99937 * 10 8 6 12 12 H 1.48505 * 109.46905 * 210.00226 * 10 8 6 13 13 H 1.48504 * 109.46967 * 330.00146 * 10 8 6 14 14 C 1.34776 * 119.99789 * 114.94109 * 4 2 1 15 15 O 1.21367 * 120.00436 * 3.93907 * 14 4 2 16 16 C 1.49331 * 120.00033 * 183.93791 * 14 4 2 17 17 O 1.21403 * 119.99785 * 354.88397 * 16 14 4 18 18 N 1.34780 * 120.00025 * 175.15566 * 16 14 4 19 19 C 1.40479 * 119.99940 * 179.72851 * 18 16 14 20 20 C 1.40339 * 126.11444 * 0.02562 * 19 18 16 21 21 N 1.30829 * 108.20942 * 179.97438 * 20 19 18 22 22 N 1.40054 * 108.36504 * 0.02562 * 21 20 19 23 23 C 1.46503 * 125.99629 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46798 * 304.97369 * 23 22 21 25 25 F 1.39899 * 109.46934 * 180.02562 * 24 23 22 26 26 C 1.35231 * 108.01312 * 359.75079 * 22 21 20 27 27 H 1.09002 * 109.46987 * 299.99940 * 1 2 3 28 28 H 1.08994 * 109.47331 * 60.00522 * 1 2 3 29 29 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46987 * 240.00060 * 2 1 3 31 31 H 1.09000 * 109.47388 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46725 * 299.99836 * 3 2 1 33 33 H 1.09000 * 109.47175 * 59.99387 * 3 2 1 34 34 H 1.08999 * 109.47229 * 23.04260 * 5 4 2 35 35 H 1.09005 * 109.47251 * 143.04093 * 5 4 2 36 36 H 0.96997 * 120.00255 * 180.02562 * 9 8 6 37 37 H 0.97004 * 119.99774 * 359.72619 * 18 16 14 38 38 H 1.07998 * 125.89475 * 359.97438 * 20 19 18 39 39 H 1.08999 * 109.47129 * 64.97312 * 23 22 21 40 40 H 1.08994 * 109.47299 * 184.97622 * 23 22 21 41 41 H 1.09005 * 109.46880 * 300.00059 * 24 23 22 42 42 H 1.09002 * 109.47499 * 59.99717 * 24 23 22 43 43 H 1.08001 * 126.18141 * 180.24020 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7582 -0.1287 2.5239 6 6 2.9586 0.6604 2.9795 7 1 3.8284 0.7355 2.3438 8 6 2.9467 1.2856 4.2083 9 7 3.9940 1.9746 4.6057 10 14 1.4424 1.1551 5.3082 11 1 1.5760 -0.0315 6.1908 12 1 1.3293 2.3804 6.1396 13 1 0.2260 1.0128 4.4682 14 6 2.7071 -1.8427 1.0752 15 8 2.9846 -2.2711 -0.0259 16 6 3.1287 -2.5923 2.2960 17 8 2.9334 -2.1188 3.3966 18 7 3.7309 -3.7920 2.1756 19 6 4.1327 -4.4946 3.3239 20 6 3.9710 -4.0706 4.6519 21 7 4.4678 -4.9906 5.4382 22 7 4.9631 -6.0310 4.6421 23 6 5.6032 -7.2564 5.1269 24 6 6.7808 -6.8923 6.0333 25 9 7.3924 -8.0624 6.4959 26 6 4.7425 -5.7084 3.3475 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.8888 0.5271 2.4769 35 1 1.5658 -0.9372 3.2292 36 1 3.9858 2.4142 5.4704 37 1 3.8869 -4.1704 1.2961 38 1 3.5152 -3.1446 4.9698 39 1 4.8798 -7.8458 5.6902 40 1 5.9640 -7.8379 4.2786 41 1 7.5042 -6.3028 5.4700 42 1 6.4201 -6.3106 6.8817 43 1 5.0056 -6.3065 2.4876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599975687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:44:05 Heat of formation + Delta-G solvation = -16.525686 kcal Electronic energy + Delta-G solvation = -28164.907993 eV Core-core repulsion = 23969.766097 eV Total energy + Delta-G solvation = -4195.141896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.154 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.04266 -41.40881 -40.13756 -38.13374 -36.28647 -34.88318 -33.57523 -32.72972 -31.41787 -30.07246 -28.38623 -27.85444 -26.73546 -24.74509 -23.83236 -22.57503 -21.64152 -21.19415 -19.97609 -18.74850 -17.64140 -17.10701 -16.94057 -16.75556 -16.53321 -16.09769 -15.61785 -15.31887 -15.20843 -14.77085 -14.51362 -14.03782 -13.83632 -13.74323 -13.54963 -13.35339 -13.09810 -12.81257 -12.51805 -12.47867 -11.91799 -11.85764 -11.81018 -11.74816 -11.32440 -11.09816 -10.91292 -10.74620 -10.72444 -10.59607 -10.43212 -10.22230 -10.10934 -9.45556 -9.44486 -8.76789 -8.45437 -7.93030 -7.63531 -6.03983 -4.01091 1.59966 2.07639 2.18200 2.86966 2.94881 3.33197 3.38022 3.41582 3.86672 3.93279 4.05673 4.26756 4.44531 4.60123 4.66245 4.76881 4.88821 4.97654 5.20611 5.29216 5.33601 5.42216 5.50822 5.59591 5.64650 5.66765 5.96567 6.03000 6.18616 6.24290 6.28884 6.55479 6.57036 6.82049 6.88632 6.93483 7.05395 7.17111 7.44477 7.60218 7.69190 7.92773 8.25376 8.48790 8.61330 8.97709 9.56651 11.09219 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.003555 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.043553 B = 7874.152493 C = 9311.069395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 C -0.152 4.152 4 N -0.548 5.548 5 C 0.190 3.810 6 C -0.513 4.513 7 H 0.072 0.928 8 C 0.080 3.920 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.272 1.272 12 H -0.289 1.289 13 H -0.268 1.268 14 C 0.514 3.486 15 O -0.559 6.559 16 C 0.500 3.500 17 O -0.455 6.455 18 N -0.629 5.629 19 C 0.017 3.983 20 C 0.063 3.937 21 N -0.288 5.288 22 N -0.379 5.379 23 C 0.116 3.884 24 C 0.050 3.950 25 F -0.211 7.211 26 C 0.014 3.986 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.263 0.737 37 H 0.416 0.584 38 H 0.213 0.787 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -15.470 -4.388 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 C -0.210 4.210 4 N -0.278 5.278 5 C 0.070 3.930 6 C -0.551 4.551 7 H 0.090 0.910 8 C -0.123 4.123 9 N -0.537 5.537 10 Si 0.699 3.301 11 H -0.197 1.197 12 H -0.215 1.215 13 H -0.193 1.193 14 C 0.297 3.703 15 O -0.440 6.440 16 C 0.282 3.718 17 O -0.325 6.325 18 N -0.278 5.278 19 C -0.088 4.088 20 C -0.124 4.124 21 N -0.109 5.109 22 N -0.164 5.164 23 C -0.007 4.007 24 C -0.006 4.006 25 F -0.192 7.192 26 C -0.133 4.133 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.253 0.747 38 H 0.229 0.771 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.567 -15.616 -2.761 15.869 hybrid contribution -0.610 0.081 -0.571 0.839 sum -1.177 -15.535 -3.332 15.932 Atomic orbital electron populations 1.22152 0.95367 1.01854 1.02399 1.21086 0.93644 0.94107 0.88329 1.22047 1.02182 0.94705 1.02045 1.48020 1.49873 1.20200 1.09750 1.20442 0.97912 0.95961 0.78643 1.21095 1.00668 1.30269 1.03070 0.90953 1.24720 0.95737 0.94669 0.97125 1.69886 1.29214 1.33747 1.20814 0.86927 0.83837 0.77818 0.81508 1.19712 1.21495 1.19269 1.19615 0.79900 0.82561 0.88245 1.90655 1.56851 1.69321 1.27190 1.20260 0.79718 0.81098 0.90686 1.90729 1.49742 1.64928 1.27092 1.42488 1.58671 1.18921 1.07680 1.17747 1.08709 0.94141 0.88208 1.24756 0.98776 0.99564 0.89351 1.77402 1.17684 0.97037 1.18761 1.47869 1.48053 1.16746 1.03777 1.22059 0.95078 0.83268 1.00262 1.22221 0.94425 0.84175 0.99761 1.92784 1.84544 1.51364 1.90482 1.21713 1.05629 0.97367 0.88584 0.91841 0.91702 0.92812 0.88950 0.92042 0.92797 0.90671 0.95262 0.91601 0.92706 0.74729 0.77119 0.88778 0.87648 0.89952 0.88949 0.80543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.26 37.16 0.34 -1.92 16 2 C 0.13 2.23 3.22 -67.93 -0.22 2.01 16 3 C -0.15 -2.58 8.66 37.16 0.32 -2.26 16 4 N -0.55 -10.98 2.38 -168.02 -0.40 -11.38 16 5 C 0.19 4.29 2.98 -5.19 -0.02 4.28 16 6 C -0.51 -13.68 8.02 -34.44 -0.28 -13.95 16 7 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 8 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 9 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 10 Si 0.87 21.01 27.47 -169.99 -4.67 16.34 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 14 C 0.51 10.17 7.66 -11.64 -0.09 10.08 16 15 O -0.56 -11.03 15.82 5.48 0.09 -10.95 16 16 C 0.50 9.54 7.74 -11.64 -0.09 9.45 16 17 O -0.46 -9.88 9.54 5.45 0.05 -9.83 16 18 N -0.63 -9.60 5.45 -10.48 -0.06 -9.66 16 19 C 0.02 0.25 6.90 -83.96 -0.58 -0.33 16 20 C 0.06 1.07 10.84 -17.19 -0.19 0.88 16 21 N -0.29 -4.43 12.40 30.72 0.38 -4.05 16 22 N -0.38 -4.42 3.68 -61.15 -0.23 -4.65 16 23 C 0.12 0.90 6.96 -4.04 -0.03 0.87 16 24 C 0.05 0.42 7.74 37.16 0.29 0.71 16 25 F -0.21 -2.01 17.36 2.25 0.04 -1.97 16 26 C 0.01 0.16 11.49 -16.91 -0.19 -0.04 16 27 H 0.06 0.94 6.92 -51.93 -0.36 0.58 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.55 6.91 -51.93 -0.36 1.20 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.41 7.09 -51.93 -0.37 1.05 16 34 H 0.03 0.65 5.54 -51.93 -0.29 0.36 16 35 H 0.07 1.54 4.81 -51.93 -0.25 1.29 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.42 5.30 8.30 -40.82 -0.34 4.96 16 38 H 0.21 4.04 5.92 -52.49 -0.31 3.73 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.52 8.07 -51.93 -0.42 0.11 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -32.71 360.73 -5.07 -37.78 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.66 Total: 7.11 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -0.82 Total: 11.91 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.47 Total: -55.84 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.14 Total: -20.78 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.71 -5.07 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599975687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.254 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds