Wall clock time and date at job start Fri Apr 10 2020 18:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 N 1.46496 * 109.47191 * 119.99575 * 2 1 3 5 5 C 1.46494 * 120.00324 * 294.94097 * 4 2 1 6 6 C 1.50704 * 109.47434 * 263.04350 * 5 4 2 7 7 H 1.08005 * 119.99588 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00289 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00151 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00002 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47016 * 89.99937 * 10 8 6 12 12 H 1.48505 * 109.46905 * 210.00226 * 10 8 6 13 13 H 1.48504 * 109.46967 * 330.00146 * 10 8 6 14 14 C 1.34776 * 119.99789 * 114.94109 * 4 2 1 15 15 O 1.21367 * 120.00436 * 3.93907 * 14 4 2 16 16 C 1.49331 * 120.00033 * 183.93791 * 14 4 2 17 17 O 1.21403 * 119.99785 * 354.88397 * 16 14 4 18 18 N 1.34780 * 120.00025 * 175.15566 * 16 14 4 19 19 C 1.40479 * 119.99940 * 179.72851 * 18 16 14 20 20 C 1.40339 * 126.11444 * 0.02562 * 19 18 16 21 21 N 1.30829 * 108.20942 * 179.97438 * 20 19 18 22 22 N 1.40054 * 108.36504 * 0.02562 * 21 20 19 23 23 C 1.46503 * 125.99629 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46798 * 304.97369 * 23 22 21 25 25 F 1.39899 * 109.46934 * 180.02562 * 24 23 22 26 26 C 1.35231 * 108.01312 * 359.75079 * 22 21 20 27 27 H 1.09002 * 109.46987 * 299.99940 * 1 2 3 28 28 H 1.08994 * 109.47331 * 60.00522 * 1 2 3 29 29 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46987 * 240.00060 * 2 1 3 31 31 H 1.09000 * 109.47388 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46725 * 299.99836 * 3 2 1 33 33 H 1.09000 * 109.47175 * 59.99387 * 3 2 1 34 34 H 1.08999 * 109.47229 * 23.04260 * 5 4 2 35 35 H 1.09005 * 109.47251 * 143.04093 * 5 4 2 36 36 H 0.96997 * 120.00255 * 180.02562 * 9 8 6 37 37 H 0.97004 * 119.99774 * 359.72619 * 18 16 14 38 38 H 1.07998 * 125.89475 * 359.97438 * 20 19 18 39 39 H 1.08999 * 109.47129 * 64.97312 * 23 22 21 40 40 H 1.08994 * 109.47299 * 184.97622 * 23 22 21 41 41 H 1.09005 * 109.46880 * 300.00059 * 24 23 22 42 42 H 1.09002 * 109.47499 * 59.99717 * 24 23 22 43 43 H 1.08001 * 126.18141 * 180.24020 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7582 -0.1287 2.5239 6 6 2.9586 0.6604 2.9795 7 1 3.8284 0.7355 2.3438 8 6 2.9467 1.2856 4.2083 9 7 3.9940 1.9746 4.6057 10 14 1.4424 1.1551 5.3082 11 1 1.5760 -0.0315 6.1908 12 1 1.3293 2.3804 6.1396 13 1 0.2260 1.0128 4.4682 14 6 2.7071 -1.8427 1.0752 15 8 2.9846 -2.2711 -0.0259 16 6 3.1287 -2.5923 2.2960 17 8 2.9334 -2.1188 3.3966 18 7 3.7309 -3.7920 2.1756 19 6 4.1327 -4.4946 3.3239 20 6 3.9710 -4.0706 4.6519 21 7 4.4678 -4.9906 5.4382 22 7 4.9631 -6.0310 4.6421 23 6 5.6032 -7.2564 5.1269 24 6 6.7808 -6.8923 6.0333 25 9 7.3924 -8.0624 6.4959 26 6 4.7425 -5.7084 3.3475 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.8888 0.5271 2.4769 35 1 1.5658 -0.9372 3.2292 36 1 3.9858 2.4142 5.4704 37 1 3.8869 -4.1704 1.2961 38 1 3.5152 -3.1446 4.9698 39 1 4.8798 -7.8458 5.6902 40 1 5.9640 -7.8379 4.2786 41 1 7.5042 -6.3028 5.4700 42 1 6.4201 -6.3106 6.8817 43 1 5.0056 -6.3065 2.4876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599975687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:44:00 Heat of formation + Delta-G solvation = -39.788438 kcal Electronic energy + Delta-G solvation = -28165.916742 eV Core-core repulsion = 23969.766097 eV Total energy + Delta-G solvation = -4196.150644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.154 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -48.76764 -42.54886 -41.57754 -39.57593 -37.83036 -36.06540 -34.73687 -34.57385 -33.01728 -31.08625 -29.84292 -29.35943 -27.99128 -26.08261 -24.74857 -24.49846 -22.88465 -22.21508 -21.21318 -20.18295 -19.04942 -18.75379 -18.45043 -18.00964 -17.46130 -17.08113 -16.88105 -16.57540 -16.41075 -16.11961 -15.75145 -15.55477 -15.15671 -15.03709 -14.86427 -14.71221 -14.45011 -13.99555 -13.92322 -13.84467 -13.52524 -13.35387 -13.00903 -12.71318 -12.65229 -12.61173 -12.30648 -12.14202 -12.10685 -11.92420 -11.81315 -11.67233 -11.64399 -11.50912 -10.72628 -10.48098 -10.18423 -9.56135 -8.79499 -8.20529 -6.20326 0.33157 0.83084 1.18746 1.38255 1.44359 1.48194 1.59970 1.69763 2.40422 2.41045 2.62592 3.17442 3.24315 3.43902 3.65137 3.81599 3.98189 3.99925 4.01621 4.22033 4.23135 4.31458 4.39582 4.51803 4.57806 4.64442 4.79467 4.83397 4.87130 4.89587 4.98577 5.07044 5.20029 5.38117 5.47009 5.54500 5.58233 5.70472 5.96885 6.15371 6.19580 6.44412 6.56074 6.77053 6.86655 7.12724 7.40824 8.96388 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.003555 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.043553 B = 7874.152493 C = 9311.069395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 C -0.145 4.145 4 N -0.557 5.557 5 C 0.205 3.795 6 C -0.497 4.497 7 H 0.026 0.974 8 C 0.022 3.978 9 N -0.949 5.949 10 Si 0.932 3.068 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.238 1.238 14 C 0.510 3.490 15 O -0.559 6.559 16 C 0.493 3.507 17 O -0.493 6.493 18 N -0.607 5.607 19 C -0.023 4.023 20 C 0.036 3.964 21 N -0.313 5.313 22 N -0.367 5.367 23 C 0.110 3.890 24 C 0.053 3.947 25 F -0.215 7.215 26 C 0.058 3.942 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.031 0.969 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.262 0.738 37 H 0.430 0.570 38 H 0.179 0.821 39 H 0.105 0.895 40 H 0.148 0.852 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -18.167 -5.984 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.021 3.979 3 C -0.203 4.203 4 N -0.287 5.287 5 C 0.083 3.917 6 C -0.535 4.535 7 H 0.045 0.955 8 C -0.175 4.175 9 N -0.591 5.591 10 Si 0.757 3.243 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.161 1.161 14 C 0.293 3.707 15 O -0.441 6.441 16 C 0.275 3.725 17 O -0.366 6.366 18 N -0.256 5.256 19 C -0.127 4.127 20 C -0.150 4.150 21 N -0.136 5.136 22 N -0.151 5.151 23 C -0.011 4.011 24 C -0.003 4.003 25 F -0.196 7.196 26 C -0.091 4.091 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.269 0.731 38 H 0.196 0.804 39 H 0.123 0.877 40 H 0.166 0.834 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.711 -18.364 -4.393 18.960 hybrid contribution -0.069 0.734 -0.145 0.751 sum -1.780 -17.631 -4.539 18.292 Atomic orbital electron populations 1.22101 0.92597 1.02618 1.03602 1.21383 0.95840 0.93453 0.87184 1.21989 1.00209 0.95266 1.02840 1.48080 1.50295 1.20564 1.09723 1.20094 0.96093 0.95420 0.80051 1.21191 1.00499 1.29768 1.02079 0.95541 1.25531 0.98693 0.94547 0.98778 1.70041 1.31794 1.35768 1.21483 0.85947 0.81306 0.77351 0.79729 1.20243 1.21304 1.16106 1.19837 0.79621 0.82678 0.88594 1.90634 1.56789 1.69427 1.27205 1.20257 0.80205 0.82131 0.89934 1.90726 1.51827 1.66098 1.27934 1.42218 1.57091 1.17603 1.08671 1.17919 1.11773 0.95975 0.87064 1.24362 1.00202 0.99377 0.91045 1.77344 1.18660 0.98057 1.19503 1.48271 1.46316 1.16644 1.03884 1.22462 0.94788 0.81757 1.02055 1.22145 0.94817 0.83834 0.99454 1.92778 1.84652 1.51592 1.90589 1.22472 1.01416 0.95592 0.89578 0.92574 0.88512 0.92271 0.88507 0.95018 0.88940 0.92833 0.93988 0.91762 0.92867 0.73145 0.80450 0.87653 0.83391 0.89515 0.90503 0.75115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.26 71.98 0.67 -3.22 16 2 C 0.12 4.06 3.22 44.99 0.15 4.20 16 3 C -0.15 -4.89 8.66 71.98 0.62 -4.27 16 4 N -0.56 -22.37 2.38 -803.84 -1.91 -24.28 16 5 C 0.20 9.33 2.98 85.64 0.25 9.58 16 6 C -0.50 -27.63 8.02 25.60 0.21 -27.42 16 7 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 8 C 0.02 1.25 5.47 84.65 0.46 1.72 16 9 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 10 Si 0.93 44.20 27.47 68.60 1.88 46.09 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 14 C 0.51 20.24 7.66 87.23 0.67 20.90 16 15 O -0.56 -21.63 15.82 -3.30 -0.05 -21.68 16 16 C 0.49 19.18 7.74 87.23 0.67 19.85 16 17 O -0.49 -22.41 9.54 -3.41 -0.03 -22.44 16 18 N -0.61 -18.12 5.45 -305.41 -1.67 -19.79 16 19 C -0.02 -0.66 6.90 37.71 0.26 -0.40 16 20 C 0.04 1.27 10.84 85.35 0.93 2.20 16 21 N -0.31 -9.62 12.40 -56.72 -0.70 -10.33 16 22 N -0.37 -7.56 3.68 -347.38 -1.28 -8.84 16 23 C 0.11 1.30 6.96 86.38 0.60 1.90 16 24 C 0.05 0.79 7.74 71.98 0.56 1.34 16 25 F -0.21 -3.63 17.36 44.97 0.78 -2.85 16 26 C 0.06 1.08 11.49 83.62 0.96 2.05 16 27 H 0.06 1.53 6.92 -2.39 -0.02 1.52 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 3.11 6.91 -2.39 -0.02 3.10 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 2.02 7.09 -2.39 -0.02 2.00 16 34 H 0.04 1.82 5.54 -2.39 -0.01 1.81 16 35 H 0.06 3.05 4.81 -2.43 -0.01 3.03 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.43 10.13 8.30 -92.71 -0.77 9.36 16 38 H 0.18 7.43 5.92 -2.91 -0.02 7.41 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.15 0.60 8.07 -2.39 -0.02 0.58 16 41 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.23 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -76.77 360.73 4.56 -72.21 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.23 Total: 22.72 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: 7.01 Total: 28.42 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.26 Total: -122.47 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.08 Total: -44.12 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Total: -76.77 4.56 -72.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599975687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.419 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds