Wall clock time and date at job start Fri Apr 10 2020 18:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00421 * 2 1 4 4 O 1.20828 * 119.99785 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00638 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.47882 * 180.02562 * 5 3 2 7 7 C 1.37099 * 119.99931 * 264.09372 * 6 5 3 8 8 H 1.08000 * 119.99628 * 196.60321 * 7 6 5 9 9 C 1.38948 * 120.00145 * 16.59610 * 7 6 5 10 10 N 1.31408 * 120.00029 * 20.79258 * 9 7 6 11 11 Si 1.86802 * 119.99981 * 200.79141 * 9 7 6 12 12 H 1.48506 * 109.47094 * 60.00174 * 11 9 7 13 13 H 1.48500 * 109.47258 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47265 * 300.00298 * 11 9 7 15 15 C 1.34779 * 119.99973 * 84.08232 * 6 5 3 16 16 O 1.21289 * 120.00091 * 0.02562 * 15 6 5 17 17 C 1.50702 * 119.99907 * 180.02562 * 15 6 5 18 18 C 1.52994 * 109.46961 * 180.02562 * 17 15 6 19 19 C 1.52996 * 109.47207 * 180.02562 * 18 17 15 20 20 N 1.46509 * 109.47434 * 180.02562 * 19 18 17 21 21 C 1.33873 * 122.75883 * 269.70899 * 20 19 18 22 22 O 1.21225 * 125.39985 * 359.97438 * 21 20 19 23 23 C 1.51321 * 109.20627 * 179.83874 * 21 20 19 24 24 C 1.54228 * 103.55008 * 0.38839 * 23 21 20 25 25 C 1.33873 * 122.76345 * 89.99913 * 20 19 18 26 26 O 1.21231 * 125.39346 * 359.97438 * 25 20 19 27 27 H 1.08989 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46797 * 300.00048 * 1 2 3 29 29 H 1.09002 * 109.47173 * 59.99558 * 1 2 3 30 30 H 1.09001 * 109.46905 * 60.00284 * 5 3 2 31 31 H 1.09007 * 109.47306 * 300.01054 * 5 3 2 32 32 H 0.97004 * 119.99801 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.47175 * 60.00481 * 17 15 6 34 34 H 1.08993 * 109.47298 * 300.00324 * 17 15 6 35 35 H 1.09003 * 109.47270 * 300.00129 * 18 17 15 36 36 H 1.09000 * 109.47340 * 60.00474 * 18 17 15 37 37 H 1.09003 * 109.47077 * 300.00206 * 19 18 17 38 38 H 1.08999 * 109.47085 * 60.00240 * 19 18 17 39 39 H 1.08994 * 110.79688 * 241.78529 * 23 21 20 40 40 H 1.09004 * 110.54554 * 118.87610 * 23 21 20 41 41 H 1.08999 * 110.60770 * 241.25776 * 24 23 21 42 42 H 1.09010 * 110.60432 * 118.29117 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2939 3.3026 -1.1797 8 1 4.8474 4.2299 -1.1711 9 6 3.8980 2.7409 -2.3873 10 7 2.9096 1.8755 -2.4168 11 14 4.7709 3.2161 -3.9691 12 1 6.2101 2.8651 -3.8648 13 1 4.1636 2.4833 -5.1090 14 1 4.6327 4.6779 -4.1909 15 6 4.0571 3.3597 1.1623 16 8 3.7813 2.8085 2.2069 17 6 4.4840 4.8050 1.1627 18 6 4.4862 5.3357 2.5977 19 6 4.9190 6.8031 2.5981 20 7 4.9217 7.3112 3.9723 21 6 3.8506 7.8842 4.5349 22 8 2.7780 8.0500 3.9949 23 6 4.1899 8.2893 5.9528 24 6 5.6615 7.8553 6.1103 25 6 5.9972 7.2456 4.7668 26 8 7.0699 6.7721 4.4588 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 2.6330 1.4837 -3.2600 33 1 3.7888 5.3894 0.5600 34 1 5.4867 4.8879 0.7435 35 1 3.4836 5.2528 3.0173 36 1 5.1817 4.7513 3.2001 37 1 5.9215 6.8864 2.1783 38 1 4.2232 7.3873 1.9959 39 1 3.5565 7.7640 6.6675 40 1 4.0928 9.3680 6.0762 41 1 5.7601 7.1141 6.9034 42 1 6.2968 8.7185 6.3093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609992613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:23 Heat of formation + Delta-G solvation = -200.745889 kcal Electronic energy + Delta-G solvation = -28188.870191 eV Core-core repulsion = 23941.074368 eV Total energy + Delta-G solvation = -4247.795824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.82512 -41.38738 -40.22739 -39.62478 -37.44573 -37.01943 -36.58481 -35.74948 -33.53359 -32.99766 -30.52686 -28.40522 -27.58143 -27.07678 -26.37776 -23.57715 -23.26460 -22.00425 -21.06689 -20.47175 -18.97111 -18.51865 -18.28491 -18.05705 -17.66917 -17.51251 -17.31490 -16.96884 -16.42654 -16.17334 -16.10540 -15.66752 -15.27137 -15.00080 -14.86206 -14.84130 -14.50772 -14.26318 -14.11670 -13.65474 -13.51076 -13.28125 -13.11503 -12.99208 -12.90845 -12.81507 -12.52896 -12.30957 -12.12485 -12.08440 -11.86141 -11.61777 -11.59943 -11.54034 -11.06040 -10.96198 -10.87191 -10.52298 -9.92482 -8.40436 -5.96204 0.51470 1.41239 1.49667 1.52815 1.59640 1.65912 1.75727 1.76377 2.21292 2.32247 2.83187 3.10235 3.24702 3.30008 3.66876 3.84825 3.87515 3.98371 4.19532 4.22163 4.31256 4.32620 4.36436 4.37738 4.43174 4.49687 4.64024 4.66290 4.69692 4.78142 4.82625 4.92804 4.95257 5.01783 5.17125 5.42546 5.58971 5.69023 5.86804 6.29885 6.35324 6.75872 7.04065 7.16753 7.43860 7.84929 8.67063 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003298 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.099189 B = 8488.626932 C = 9604.827809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.539 6.539 5 C 0.153 3.847 6 N -0.440 5.440 7 C -0.356 4.356 8 H 0.120 0.880 9 C -0.004 4.004 10 N -0.898 5.898 11 Si 0.998 3.002 12 H -0.261 1.261 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.453 3.547 16 O -0.635 6.635 17 C -0.105 4.105 18 C -0.097 4.097 19 C 0.101 3.899 20 N -0.581 5.581 21 C 0.514 3.486 22 O -0.528 6.528 23 C -0.140 4.140 24 C -0.139 4.139 25 C 0.516 3.484 26 O -0.523 6.523 27 H 0.136 0.864 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.272 0.728 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 9.338 11.881 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.329 3.671 4 O -0.427 6.427 5 C 0.027 3.973 6 N -0.158 5.158 7 C -0.483 4.483 8 H 0.138 0.862 9 C -0.206 4.206 10 N -0.536 5.536 11 Si 0.822 3.178 12 H -0.185 1.185 13 H -0.213 1.213 14 H -0.193 1.193 15 C 0.244 3.756 16 O -0.523 6.523 17 C -0.145 4.145 18 C -0.136 4.136 19 C -0.020 4.020 20 N -0.323 5.323 21 C 0.306 3.694 22 O -0.402 6.402 23 C -0.179 4.179 24 C -0.178 4.178 25 C 0.308 3.692 26 O -0.397 6.397 27 H 0.154 0.846 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.110 9.078 11.750 15.407 hybrid contribution -0.490 -0.282 -1.478 1.582 sum 3.619 8.796 10.273 14.000 Atomic orbital electron populations 1.23301 0.76169 1.04939 1.01155 1.86422 1.24149 1.33732 1.85009 1.24112 0.92673 0.80784 0.69490 1.90482 1.67388 1.37758 1.47086 1.20539 0.87052 0.86037 1.03702 1.43682 1.56948 1.08397 1.06749 1.20079 1.35289 1.10573 0.82355 0.86230 1.26151 0.94962 0.96843 1.02658 1.69951 1.23918 1.31096 1.28629 0.84910 0.78582 0.78471 0.75882 1.18537 1.21322 1.19251 1.20973 0.81591 0.89943 0.83064 1.90490 1.57165 1.71608 1.33081 1.21218 1.03928 0.91820 0.97577 1.21387 1.00921 0.94979 0.96300 1.21728 1.04536 0.93992 0.81791 1.47049 1.15491 1.53957 1.15810 1.21908 0.81851 0.74529 0.91128 1.90781 1.24954 1.54003 1.70470 1.22605 0.97137 1.07466 0.90665 1.22609 0.96982 1.05193 0.93001 1.21843 0.81857 0.76532 0.88921 1.90769 1.25202 1.44454 1.79310 0.84612 0.93225 0.93594 0.85901 0.89416 0.91771 0.89331 0.87491 0.93838 0.92422 0.87735 0.88691 0.84073 0.83035 0.83944 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.74 10.57 -51.42 -0.54 -17.29 16 3 C 0.49 25.32 6.13 71.23 0.44 25.76 16 4 O -0.54 -31.64 15.79 21.96 0.35 -31.30 16 5 C 0.15 7.65 5.14 85.63 0.44 8.09 16 6 N -0.44 -22.73 2.18 -639.61 -1.39 -24.13 16 7 C -0.36 -17.78 9.15 84.04 0.77 -17.01 16 8 H 0.12 5.42 6.55 -2.91 -0.02 5.40 16 9 C 0.00 -0.21 4.90 84.93 0.42 0.21 16 10 N -0.90 -47.05 9.24 21.66 0.20 -46.85 16 11 Si 1.00 38.72 29.60 68.60 2.03 40.76 16 12 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 13 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 15 C 0.45 22.89 7.42 87.66 0.65 23.54 16 16 O -0.63 -35.18 15.66 -3.06 -0.05 -35.23 16 17 C -0.11 -4.21 4.14 29.85 0.12 -4.09 16 18 C -0.10 -3.53 4.83 30.59 0.15 -3.38 16 19 C 0.10 2.87 5.56 86.38 0.48 3.35 16 20 N -0.58 -14.11 2.55 -756.65 -1.93 -16.04 16 21 C 0.51 11.50 8.08 88.00 0.71 12.21 16 22 O -0.53 -16.71 17.47 -2.86 -0.05 -16.76 16 23 C -0.14 -1.17 7.03 30.46 0.21 -0.96 16 24 C -0.14 -1.09 7.03 30.46 0.21 -0.87 16 25 C 0.52 10.94 8.08 87.99 0.71 11.65 16 26 O -0.52 -15.28 17.48 -2.88 -0.05 -15.33 16 27 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 29 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 30 H 0.12 6.08 6.35 -2.39 -0.02 6.06 16 31 H 0.09 4.17 7.61 -2.38 -0.02 4.15 16 32 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 33 H 0.09 3.55 8.10 -2.39 -0.02 3.53 16 34 H 0.11 3.75 7.70 -2.39 -0.02 3.73 16 35 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 37 H 0.10 2.72 7.83 -2.39 -0.02 2.70 16 38 H 0.09 2.67 7.82 -2.39 -0.02 2.65 16 39 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.15 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.15 0.29 8.14 -2.38 -0.02 0.27 16 Total: -1.00 -82.32 363.32 6.12 -76.20 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 1.05 Total: 24.95 kcal Atomic # 6 Polarization: 54.51 SS G_CDS: 6.51 Total: 61.02 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -3.13 Total: -87.02 kcal Atomic # 8 Polarization: -115.56 SS G_CDS: -0.34 Total: -115.90 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.76 kcal Total: -82.32 6.12 -76.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.549 kcal (2) G-P(sol) polarization free energy of solvation -82.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds