Wall clock time and date at job start Fri Apr 10 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46992 * 299.99721 * 3 2 1 6 6 H 1.48495 * 109.47470 * 60.00146 * 3 2 1 7 7 C 1.39009 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99738 * 191.28666 * 7 2 1 9 9 N 1.36889 * 120.00291 * 11.28983 * 7 2 1 10 10 C 1.38215 * 125.61748 * 222.06857 * 9 7 2 11 11 C 1.46890 * 125.43747 * 0.02562 * 10 9 7 12 12 O 1.21663 * 119.99830 * 186.38433 * 11 10 9 13 13 N 1.34773 * 120.00056 * 6.38136 * 11 10 9 14 14 C 1.46496 * 119.99982 * 185.31684 * 13 11 10 15 15 C 1.52999 * 109.47292 * 177.17447 * 14 13 11 16 16 N 1.46505 * 109.47472 * 179.97438 * 15 14 13 17 17 N 1.28881 * 125.44536 * 89.99890 * 16 15 14 18 18 C 1.31045 * 107.90991 * 179.97438 * 17 16 15 19 19 N 1.33312 * 106.90493 * 0.02562 * 18 17 16 20 20 N 1.28774 * 125.44596 * 269.69707 * 16 15 14 21 21 C 1.36117 * 109.12386 * 179.97438 * 10 9 7 22 22 C 1.41699 * 107.75146 * 0.02562 * 21 10 9 23 23 C 1.40017 * 133.34920 * 179.97438 * 22 21 10 24 24 C 1.36582 * 119.83124 * 180.02562 * 23 22 21 25 25 C 1.38855 * 120.59992 * 359.97438 * 24 23 22 26 26 C 1.37848 * 120.63181 * 0.24721 * 25 24 23 27 27 C 1.37838 * 125.61929 * 42.06288 * 9 7 2 28 28 H 0.97002 * 120.00038 * 3.52700 * 1 2 3 29 29 H 0.96999 * 119.99985 * 5.31730 * 13 11 10 30 30 H 1.09001 * 109.47537 * 297.17660 * 14 13 11 31 31 H 1.09007 * 109.47331 * 57.17854 * 14 13 11 32 32 H 1.09000 * 109.47443 * 300.00254 * 15 14 13 33 33 H 1.08998 * 109.47144 * 60.00174 * 15 14 13 34 34 H 1.08002 * 126.54675 * 179.97438 * 18 17 16 35 35 H 1.08009 * 126.12571 * 179.97438 * 21 10 9 36 36 H 1.08001 * 120.08618 * 0.03969 * 23 22 21 37 37 H 1.08002 * 119.70341 * 180.02562 * 24 23 22 38 38 H 1.07992 * 119.68842 * 180.02562 * 25 24 23 39 39 H 1.08000 * 120.09394 * 179.69533 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8887 2.3964 -1.2126 6 1 1.8887 2.3965 1.2125 7 6 2.0085 -1.2039 0.0005 8 1 3.0729 -1.2128 0.1836 9 7 1.3439 -2.3780 -0.2310 10 6 1.5409 -3.5628 0.4530 11 6 2.4988 -3.7649 1.5481 12 8 2.6747 -4.8789 2.0044 13 7 3.1827 -2.7164 2.0473 14 6 4.2211 -2.9332 3.0576 15 6 4.8858 -1.5985 3.4004 16 7 5.9239 -1.8152 4.4112 17 7 7.1608 -2.0828 4.1669 18 6 7.7803 -2.2081 5.3148 19 7 6.8720 -2.0068 6.2696 20 7 5.7476 -1.7634 5.6858 21 6 0.7047 -4.5121 -0.0495 22 6 -0.0512 -3.9155 -1.0890 23 6 -1.0465 -4.3938 -1.9499 24 6 -1.6033 -3.5579 -2.8755 25 6 -1.1919 -2.2352 -2.9716 26 6 -0.2106 -1.7426 -2.1382 27 6 0.3680 -2.5735 -1.1846 28 1 -0.4850 0.8385 -0.0517 29 1 2.9873 -1.8182 1.7376 30 1 3.7715 -3.3565 3.9558 31 1 4.9700 -3.6223 2.6668 32 1 5.3355 -1.1752 2.5022 33 1 4.1371 -0.9095 3.7911 34 1 8.8268 -2.4325 5.4597 35 1 0.6313 -5.5368 0.2838 36 1 -1.3733 -5.4209 -1.8820 37 1 -2.3712 -3.9289 -3.5383 38 1 -1.6424 -1.5871 -3.7086 39 1 0.1062 -0.7137 -2.2237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610924606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:26 Heat of formation + Delta-G solvation = 143.430613 kcal Electronic energy + Delta-G solvation = -26662.598700 eV Core-core repulsion = 22801.621912 eV Total energy + Delta-G solvation = -3860.976789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.40019 -42.24570 -40.35778 -37.61051 -37.38350 -35.58180 -35.14161 -34.11351 -32.48571 -31.42333 -30.52598 -29.55562 -26.86064 -26.30340 -24.98462 -24.23258 -23.16556 -22.74442 -21.80257 -21.10121 -19.94740 -18.94334 -18.38810 -17.89234 -17.37650 -17.03202 -16.89014 -16.48280 -16.28797 -16.14093 -15.59052 -15.44823 -14.94375 -14.74438 -14.64204 -14.61741 -14.20838 -13.84425 -13.60202 -13.42793 -13.32111 -13.06007 -12.82362 -12.77344 -12.33045 -12.12105 -12.08464 -12.05957 -11.92701 -11.50998 -11.47003 -11.27969 -10.99254 -10.43755 -10.26505 -8.97382 -8.63283 -8.30380 -6.50794 0.08035 0.09986 0.73553 1.10672 1.22768 1.34831 1.41986 1.43554 1.55652 2.08707 2.21679 2.46184 2.77105 2.91008 3.11814 3.26596 3.36353 3.44114 3.78549 3.95304 3.99659 4.23034 4.36471 4.43429 4.48524 4.55444 4.72032 4.74340 4.78697 4.84565 5.00306 5.04030 5.07001 5.19146 5.25396 5.36464 5.45418 5.72396 5.90162 5.96682 6.18212 6.23019 6.42040 6.56333 6.89593 7.14366 7.28505 7.48146 8.38704 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003614 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.757202 B = 7746.665383 C = 9299.755737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.025 3.975 3 Si 0.987 3.013 4 H -0.239 1.239 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.124 0.876 9 N -0.269 5.269 10 C -0.046 4.046 11 C 0.601 3.399 12 O -0.577 6.577 13 N -0.715 5.715 14 C 0.114 3.886 15 C 0.119 3.881 16 N -0.132 5.132 17 N -0.320 5.320 18 C 0.150 3.850 19 N -0.311 5.311 20 N -0.077 5.077 21 C -0.177 4.177 22 C -0.156 4.156 23 C -0.092 4.092 24 C -0.154 4.154 25 C -0.136 4.136 26 C -0.083 4.083 27 C 0.075 3.925 28 H 0.286 0.714 29 H 0.422 0.578 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.278 0.722 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 2.576 1.136 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.162 1.162 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.522 4.522 8 H 0.142 0.858 9 N 0.066 4.934 10 C -0.160 4.160 11 C 0.390 3.610 12 O -0.458 6.458 13 N -0.375 5.375 14 C -0.012 4.012 15 C -0.001 4.001 16 N -0.045 5.045 17 N -0.170 5.170 18 C -0.152 4.152 19 N -0.182 5.182 20 N -0.070 5.070 21 C -0.205 4.205 22 C -0.160 4.160 23 C -0.111 4.111 24 C -0.173 4.173 25 C -0.157 4.157 26 C -0.103 4.103 27 C -0.039 4.039 28 H 0.096 0.904 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.294 0.706 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.435 2.438 1.791 8.027 hybrid contribution 0.447 0.907 -0.118 1.018 sum 7.882 3.344 1.672 8.724 Atomic orbital electron populations 1.70065 1.08070 1.30531 1.38888 1.26531 0.96036 1.03263 0.92799 0.84977 0.79845 0.75863 0.78657 1.16190 1.20037 1.19401 1.20080 0.94095 0.82518 1.55469 0.85844 1.40151 1.26077 1.06931 1.20202 1.20315 1.05416 0.89856 1.00461 1.17126 0.79083 0.83944 0.80836 1.90714 1.67715 1.25224 1.62164 1.46246 1.37435 1.11693 1.42131 1.21399 0.90777 0.96269 0.92753 1.22525 0.88092 0.98742 0.90755 1.50156 1.06911 1.41478 1.05961 1.74788 0.92825 1.20459 1.28935 1.28280 1.04190 1.00230 0.82498 1.75890 0.96162 1.17920 1.28183 1.79036 1.20363 1.16202 0.91435 1.20616 1.00062 0.98951 1.00865 1.18406 1.02426 0.93816 1.01388 1.20474 0.95519 1.00046 0.95042 1.20739 1.02327 0.93685 1.00523 1.21029 0.97820 0.96591 1.00221 1.20157 0.97670 0.97715 0.94709 1.18652 0.96740 0.94556 0.94002 0.90368 0.73193 0.91345 0.90781 0.83498 0.83721 0.70644 0.84230 0.85017 0.83766 0.84603 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -39.53 10.77 21.67 0.23 -39.29 16 2 C 0.03 1.06 4.66 84.95 0.40 1.46 16 3 Si 0.99 31.50 29.57 68.60 2.03 33.53 16 4 H -0.24 -6.77 7.11 99.48 0.71 -6.06 16 5 H -0.28 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.27 -8.47 7.11 99.48 0.71 -7.76 16 7 C -0.40 -17.17 7.70 84.09 0.65 -16.52 16 8 H 0.12 4.74 6.43 -2.91 -0.02 4.73 16 9 N -0.27 -12.85 2.81 -331.34 -0.93 -13.79 16 10 C -0.05 -2.15 6.77 39.91 0.27 -1.88 16 11 C 0.60 25.76 7.76 86.51 0.67 26.43 16 12 O -0.58 -26.91 16.86 -4.23 -0.07 -26.98 16 13 N -0.71 -24.24 5.32 -466.89 -2.49 -26.72 16 14 C 0.11 3.09 6.00 86.38 0.52 3.61 16 15 C 0.12 2.40 6.72 86.38 0.58 2.98 16 16 N -0.13 -3.10 4.00 -187.68 -0.75 -3.85 16 17 N -0.32 -7.17 12.13 -61.09 -0.74 -7.91 16 18 C 0.15 2.83 13.26 180.69 2.40 5.22 16 19 N -0.31 -7.75 12.50 -61.11 -0.76 -8.51 16 20 N -0.08 -2.04 13.25 37.02 0.49 -1.55 16 21 C -0.18 -8.16 10.55 22.63 0.24 -7.93 16 22 C -0.16 -7.12 6.16 -21.34 -0.13 -7.25 16 23 C -0.09 -3.51 10.06 22.31 0.22 -3.28 16 24 C -0.15 -5.28 9.97 22.03 0.22 -5.07 16 25 C -0.14 -5.05 10.02 22.33 0.22 -4.83 16 26 C -0.08 -3.67 8.55 22.38 0.19 -3.48 16 27 C 0.08 3.64 6.04 39.06 0.24 3.87 16 28 H 0.29 12.42 8.31 -92.71 -0.77 11.65 16 29 H 0.42 13.88 4.57 -92.71 -0.42 13.45 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.28 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.14 5.99 8.06 -2.91 -0.02 5.97 16 36 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 37 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.10 4.65 6.60 -2.91 -0.02 4.64 16 Total: -1.00 -64.96 341.53 4.38 -60.58 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: 0.69 Total: 41.17 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 6.68 Total: -6.67 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -4.95 Total: -101.63 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 31.50 SS G_CDS: 2.03 Total: 33.53 kcal Total: -64.96 4.38 -60.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610924606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.009 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds