Wall clock time and date at job start Fri Apr 10 2020 18:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99867 * 2 1 4 4 C 1.52997 * 109.46806 * 184.32173 * 3 2 1 5 5 N 1.46491 * 109.47128 * 65.56906 * 4 3 2 6 6 C 1.46497 * 120.00339 * 83.72187 * 5 4 3 7 7 C 1.50697 * 109.47847 * 89.99770 * 6 5 4 8 8 H 1.08005 * 119.99283 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00802 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00559 * 180.02562 * 9 7 6 11 11 Si 1.86809 * 119.99581 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47218 * 90.00091 * 11 9 7 13 13 H 1.48496 * 109.46889 * 210.00141 * 11 9 7 14 14 H 1.48498 * 109.47216 * 330.00048 * 11 9 7 15 15 C 1.34775 * 119.99931 * 263.71726 * 5 4 3 16 16 O 1.21634 * 120.00465 * 181.39824 * 15 5 4 17 17 C 1.47165 * 120.00216 * 1.39508 * 15 5 4 18 18 C 1.38404 * 126.88471 * 280.68818 * 17 15 5 19 19 N 1.48014 * 127.31809 * 0.02562 * 18 17 15 20 20 O 1.21801 * 120.00270 * 90.00907 * 19 18 17 21 21 O 1.21807 * 120.00348 * 270.00132 * 19 18 17 22 22 C 1.39669 * 105.36281 * 179.97438 * 18 17 15 23 23 C 1.50697 * 126.07375 * 179.97438 * 22 18 17 24 24 N 1.30863 * 107.86060 * 359.97438 * 22 18 17 25 25 N 1.28446 * 110.92553 * 359.73916 * 24 22 18 26 26 C 1.46503 * 125.19284 * 180.27308 * 25 24 22 27 27 H 1.09001 * 109.46955 * 65.22473 * 1 2 3 28 28 H 1.09004 * 109.47407 * 185.21870 * 1 2 3 29 29 H 1.08999 * 109.47638 * 305.22217 * 1 2 3 30 30 H 1.09000 * 109.47100 * 64.31965 * 3 2 1 31 31 H 1.08999 * 109.46918 * 304.32653 * 3 2 1 32 32 H 1.08995 * 109.47177 * 305.56400 * 4 3 2 33 33 H 1.09012 * 109.46611 * 185.56805 * 4 3 2 34 34 H 1.09010 * 109.47290 * 210.00171 * 6 5 4 35 35 H 1.09001 * 109.46929 * 329.99596 * 6 5 4 36 36 H 0.97002 * 120.00145 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46989 * 89.99936 * 23 22 18 38 38 H 1.08996 * 109.47172 * 209.99991 * 23 22 18 39 39 H 1.08998 * 109.47099 * 330.00003 * 23 22 18 40 40 H 1.08998 * 109.47066 * 275.41222 * 26 25 24 41 41 H 1.09004 * 109.46674 * 35.41174 * 26 25 24 42 42 H 1.08995 * 109.47266 * 155.40572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5317 1.1863 -0.1087 5 7 3.8851 0.6176 -1.4116 6 6 3.9831 1.4857 -2.5876 7 6 5.3926 2.0036 -2.7138 8 1 6.1406 1.7152 -1.9900 9 6 5.7272 2.8463 -3.7524 10 7 6.9574 3.2978 -3.8628 11 14 4.4332 3.3456 -5.0039 12 1 3.7539 4.5842 -4.5462 13 1 5.0831 3.5933 -6.3159 14 1 3.4340 2.2561 -5.1443 15 6 4.1201 -0.7044 -1.5285 16 8 4.4384 -1.1727 -2.6050 17 6 3.9918 -1.5813 -0.3536 18 6 4.9162 -1.7490 0.6627 19 7 6.2336 -1.0874 0.7957 20 8 6.3259 -0.0279 1.3895 21 8 7.2255 -1.6024 0.3114 22 6 4.3413 -2.6742 1.5369 23 6 4.9577 -3.1938 2.8101 24 7 3.1723 -3.0099 1.0540 25 7 2.9336 -2.3876 -0.0441 26 6 1.7143 -2.5249 -0.8446 27 1 -0.3633 0.4307 -0.9331 28 1 -0.3634 -1.0234 0.0935 29 1 -0.3634 0.5927 0.8395 30 1 1.7511 1.8185 0.9262 31 1 1.6286 1.8731 -0.8487 32 1 3.9028 0.5368 0.6840 33 1 3.9815 2.1743 -0.0094 34 1 3.7232 0.9179 -3.4811 35 1 3.2961 2.3248 -2.4780 36 1 7.1926 3.8910 -4.5934 37 1 4.6690 -2.5514 3.6420 38 1 4.6065 -4.2088 2.9959 39 1 6.0433 -3.1970 2.7132 40 1 1.8088 -3.3864 -1.5056 41 1 0.8595 -2.6664 -0.1831 42 1 1.5675 -1.6241 -1.4403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610987932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:32 Heat of formation + Delta-G solvation = 14.554463 kcal Electronic energy + Delta-G solvation = -30213.153626 eV Core-core repulsion = 26006.986677 eV Total energy + Delta-G solvation = -4206.166949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.16440 -41.45871 -39.40743 -37.97856 -36.14419 -35.43145 -34.50417 -32.80611 -31.73057 -30.27577 -29.93256 -28.21778 -27.21374 -26.41391 -25.04584 -23.74086 -23.03088 -21.71238 -21.01028 -19.19812 -18.48604 -18.38915 -17.41101 -17.17969 -16.91700 -16.83473 -16.49492 -16.10733 -15.59997 -15.29642 -15.15409 -14.40640 -14.07798 -13.72529 -13.58349 -13.48150 -12.98176 -12.78079 -12.66988 -12.52788 -12.50403 -12.24462 -12.05224 -11.74538 -11.44594 -11.36645 -11.27411 -11.03749 -10.81285 -10.75652 -10.67870 -10.27407 -9.95413 -9.84881 -9.58748 -9.51397 -9.29612 -8.67120 -8.11127 -6.14261 -4.15926 0.82998 1.15177 1.37878 1.95503 2.15841 2.79188 3.18264 3.23408 3.28534 3.33972 3.57989 4.07354 4.22134 4.31021 4.53979 4.80715 4.89423 4.92153 4.95017 5.04232 5.12932 5.13666 5.17130 5.26204 5.32024 5.34456 5.38601 5.42299 5.49583 5.60584 5.80503 5.96440 6.26471 6.38533 6.62230 6.69673 6.83129 7.00013 7.45747 7.57555 7.73803 7.92405 8.25985 8.46308 8.90393 9.42298 10.98683 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.005654 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.080324 B = 4950.714119 C = 6170.807725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.044 3.956 4 C 0.103 3.897 5 N -0.563 5.563 6 C 0.218 3.782 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.887 5.887 11 Si 0.872 3.128 12 H -0.274 1.274 13 H -0.281 1.281 14 H -0.266 1.266 15 C 0.571 3.429 16 O -0.505 6.505 17 C 0.086 3.914 18 C -0.137 4.137 19 N 0.052 4.948 20 O -0.127 6.127 21 O -0.132 6.132 22 C 0.087 3.913 23 C -0.077 4.077 24 N -0.268 5.268 25 N -0.233 5.233 26 C 0.094 3.906 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 -8.957 12.182 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.034 4.034 4 C -0.021 4.021 5 N -0.294 5.294 6 C 0.098 3.902 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.126 4.126 10 N -0.525 5.525 11 Si 0.699 3.301 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.190 1.190 15 C 0.352 3.648 16 O -0.379 6.379 17 C -0.049 4.049 18 C -0.230 4.230 19 N 0.584 4.416 20 O -0.351 6.351 21 O -0.355 6.355 22 C -0.073 4.073 23 C -0.135 4.135 24 N -0.100 5.100 25 N -0.017 5.017 26 C -0.045 4.045 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.606 -10.276 11.480 22.652 hybrid contribution 0.175 1.327 -0.851 1.586 sum -16.430 -8.949 10.628 21.518 Atomic orbital electron populations 1.22756 0.81366 1.02350 1.00397 1.87879 1.19545 1.28617 1.95412 1.23120 0.94585 0.84617 1.01040 1.21789 0.92388 1.02379 0.85569 1.47847 1.64846 1.05776 1.10917 1.19837 0.98679 0.88779 0.82889 1.21247 0.93994 1.29059 1.13292 0.90353 1.24822 0.95283 0.95431 0.97037 1.69891 1.17834 1.32888 1.31851 0.86915 0.82214 0.79220 0.81756 1.19980 1.20699 1.19024 1.16863 0.79923 0.82416 0.85614 1.90890 1.45976 1.74649 1.26409 1.21309 0.88935 0.98056 0.96627 1.20998 0.89763 1.09954 1.02272 1.42299 1.01043 0.99804 0.98427 1.94548 1.92238 1.08442 1.39876 1.94589 1.26318 1.66905 1.47642 1.21665 0.91094 0.96225 0.98298 1.20273 1.00196 1.02316 0.90694 1.73253 1.17191 1.20310 0.99257 1.45278 1.13586 1.27203 1.15623 1.22481 0.82056 1.05154 0.94809 0.93820 0.90042 0.93880 0.91910 0.92148 0.90043 0.86986 0.93799 0.94985 0.92343 0.89552 0.89440 0.90411 0.89371 0.88044 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.32 101.05 1.04 1.26 16 2 O -0.40 -4.60 6.20 -35.23 -0.22 -4.81 16 3 C 0.04 0.54 6.27 37.16 0.23 0.77 16 4 C 0.10 1.67 5.74 -4.05 -0.02 1.64 16 5 N -0.56 -11.48 2.42 -176.43 -0.43 -11.91 16 6 C 0.22 5.08 4.24 -5.20 -0.02 5.06 16 7 C -0.54 -15.23 9.94 -34.44 -0.34 -15.57 16 8 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 9 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 10 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 11 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 15 C 0.57 12.13 6.69 -12.64 -0.08 12.04 16 16 O -0.51 -12.66 16.70 5.25 0.09 -12.57 16 17 C 0.09 1.55 4.50 -82.06 -0.37 1.18 16 18 C -0.14 -2.43 5.93 -79.35 -0.47 -2.90 16 19 N 0.05 1.02 4.45 34.25 0.15 1.17 16 20 O -0.13 -2.49 18.71 -29.46 -0.55 -3.04 16 21 O -0.13 -2.78 19.26 -29.46 -0.57 -3.35 16 22 C 0.09 1.26 7.22 -82.47 -0.60 0.66 16 23 C -0.08 -0.80 10.45 36.00 0.38 -0.43 16 24 N -0.27 -3.80 11.90 33.64 0.40 -3.40 16 25 N -0.23 -3.38 3.27 -63.88 -0.21 -3.59 16 26 C 0.09 0.98 9.17 59.85 0.55 1.53 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.49 6.87 -51.93 -0.36 0.13 16 29 H 0.04 0.30 8.13 -51.93 -0.42 -0.12 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 32 H 0.08 1.35 5.38 -51.93 -0.28 1.07 16 33 H 0.11 1.82 8.12 -51.92 -0.42 1.40 16 34 H 0.04 1.09 6.50 -51.92 -0.34 0.76 16 35 H 0.03 0.68 7.40 -51.93 -0.38 0.29 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.75 7.03 -51.93 -0.36 0.39 16 42 H 0.11 1.22 5.93 -51.93 -0.31 0.91 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -35.77 359.64 -5.03 -40.80 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.42 Total: -1.80 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 0.20 Total: 7.39 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.69 Total: -44.10 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.25 Total: -23.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.77 -5.03 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610987932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.353 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds