Wall clock time and date at job start Fri Apr 10 2020 18:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99867 * 2 1 4 4 C 1.52997 * 109.46806 * 184.32173 * 3 2 1 5 5 N 1.46491 * 109.47128 * 65.56906 * 4 3 2 6 6 C 1.46497 * 120.00339 * 83.72187 * 5 4 3 7 7 C 1.50697 * 109.47847 * 89.99770 * 6 5 4 8 8 H 1.08005 * 119.99283 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00802 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00559 * 180.02562 * 9 7 6 11 11 Si 1.86809 * 119.99581 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47218 * 90.00091 * 11 9 7 13 13 H 1.48496 * 109.46889 * 210.00141 * 11 9 7 14 14 H 1.48498 * 109.47216 * 330.00048 * 11 9 7 15 15 C 1.34775 * 119.99931 * 263.71726 * 5 4 3 16 16 O 1.21634 * 120.00465 * 181.39824 * 15 5 4 17 17 C 1.47165 * 120.00216 * 1.39508 * 15 5 4 18 18 C 1.38404 * 126.88471 * 280.68818 * 17 15 5 19 19 N 1.48014 * 127.31809 * 0.02562 * 18 17 15 20 20 O 1.21801 * 120.00270 * 90.00907 * 19 18 17 21 21 O 1.21807 * 120.00348 * 270.00132 * 19 18 17 22 22 C 1.39669 * 105.36281 * 179.97438 * 18 17 15 23 23 C 1.50697 * 126.07375 * 179.97438 * 22 18 17 24 24 N 1.30863 * 107.86060 * 359.97438 * 22 18 17 25 25 N 1.28446 * 110.92553 * 359.73916 * 24 22 18 26 26 C 1.46503 * 125.19284 * 180.27308 * 25 24 22 27 27 H 1.09001 * 109.46955 * 65.22473 * 1 2 3 28 28 H 1.09004 * 109.47407 * 185.21870 * 1 2 3 29 29 H 1.08999 * 109.47638 * 305.22217 * 1 2 3 30 30 H 1.09000 * 109.47100 * 64.31965 * 3 2 1 31 31 H 1.08999 * 109.46918 * 304.32653 * 3 2 1 32 32 H 1.08995 * 109.47177 * 305.56400 * 4 3 2 33 33 H 1.09012 * 109.46611 * 185.56805 * 4 3 2 34 34 H 1.09010 * 109.47290 * 210.00171 * 6 5 4 35 35 H 1.09001 * 109.46929 * 329.99596 * 6 5 4 36 36 H 0.97002 * 120.00145 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46989 * 89.99936 * 23 22 18 38 38 H 1.08996 * 109.47172 * 209.99991 * 23 22 18 39 39 H 1.08998 * 109.47099 * 330.00003 * 23 22 18 40 40 H 1.08998 * 109.47066 * 275.41222 * 26 25 24 41 41 H 1.09004 * 109.46674 * 35.41174 * 26 25 24 42 42 H 1.08995 * 109.47266 * 155.40572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5317 1.1863 -0.1087 5 7 3.8851 0.6176 -1.4116 6 6 3.9831 1.4857 -2.5876 7 6 5.3926 2.0036 -2.7138 8 1 6.1406 1.7152 -1.9900 9 6 5.7272 2.8463 -3.7524 10 7 6.9574 3.2978 -3.8628 11 14 4.4332 3.3456 -5.0039 12 1 3.7539 4.5842 -4.5462 13 1 5.0831 3.5933 -6.3159 14 1 3.4340 2.2561 -5.1443 15 6 4.1201 -0.7044 -1.5285 16 8 4.4384 -1.1727 -2.6050 17 6 3.9918 -1.5813 -0.3536 18 6 4.9162 -1.7490 0.6627 19 7 6.2336 -1.0874 0.7957 20 8 6.3259 -0.0279 1.3895 21 8 7.2255 -1.6024 0.3114 22 6 4.3413 -2.6742 1.5369 23 6 4.9577 -3.1938 2.8101 24 7 3.1723 -3.0099 1.0540 25 7 2.9336 -2.3876 -0.0441 26 6 1.7143 -2.5249 -0.8446 27 1 -0.3633 0.4307 -0.9331 28 1 -0.3634 -1.0234 0.0935 29 1 -0.3634 0.5927 0.8395 30 1 1.7511 1.8185 0.9262 31 1 1.6286 1.8731 -0.8487 32 1 3.9028 0.5368 0.6840 33 1 3.9815 2.1743 -0.0094 34 1 3.7232 0.9179 -3.4811 35 1 3.2961 2.3248 -2.4780 36 1 7.1926 3.8910 -4.5934 37 1 4.6690 -2.5514 3.6420 38 1 4.6065 -4.2088 2.9959 39 1 6.0433 -3.1970 2.7132 40 1 1.8088 -3.3864 -1.5056 41 1 0.8595 -2.6664 -0.1831 42 1 1.5675 -1.6241 -1.4403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610987932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:31 Heat of formation + Delta-G solvation = -11.134527 kcal Electronic energy + Delta-G solvation = -30214.267584 eV Core-core repulsion = 26006.986677 eV Total energy + Delta-G solvation = -4207.280907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.42297 -42.98898 -40.98715 -38.95906 -37.74223 -37.00305 -35.60863 -34.87318 -33.17293 -31.54576 -30.96816 -29.88713 -28.58729 -27.21795 -26.13817 -25.49512 -24.31640 -23.20683 -22.43429 -20.56256 -20.05373 -19.84523 -19.20775 -18.85459 -18.31239 -18.13960 -17.52010 -17.29898 -16.96616 -16.48370 -16.41563 -15.94768 -15.48719 -15.17495 -14.63458 -14.53327 -14.51495 -13.92511 -13.87519 -13.73247 -13.54310 -13.47353 -13.30291 -13.14690 -12.97433 -12.77591 -12.70702 -12.49453 -12.39708 -12.23929 -12.16089 -12.06311 -11.82769 -11.52872 -10.89079 -10.84314 -10.66278 -10.40262 -9.82237 -8.35677 -6.44941 -0.79118 -0.21290 0.00354 0.77598 0.79172 1.30076 1.30926 1.37179 1.46069 1.84419 2.28831 2.71557 2.84891 2.94563 2.98957 3.34466 3.60217 3.88644 3.96492 4.03969 4.16279 4.29011 4.36993 4.41533 4.45686 4.54625 4.56322 4.59796 4.60712 4.63906 4.70630 4.81376 4.89086 4.90864 5.07719 5.21151 5.22775 5.35822 6.07766 6.13601 6.16320 6.28005 6.38525 6.57559 6.72123 7.18965 8.81732 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.005654 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.080324 B = 4950.714119 C = 6170.807725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.413 6.413 3 C 0.055 3.945 4 C 0.096 3.904 5 N -0.564 5.564 6 C 0.228 3.772 7 C -0.548 4.548 8 H 0.019 0.981 9 C 0.014 3.986 10 N -0.942 5.942 11 Si 0.952 3.048 12 H -0.246 1.246 13 H -0.283 1.283 14 H -0.249 1.249 15 C 0.569 3.431 16 O -0.558 6.558 17 C 0.067 3.933 18 C -0.155 4.155 19 N 0.053 4.947 20 O -0.116 6.116 21 O -0.180 6.180 22 C 0.092 3.908 23 C -0.078 4.078 24 N -0.251 5.251 25 N -0.214 5.214 26 C 0.081 3.919 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.270 0.730 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.454 -9.372 13.266 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.332 6.332 3 C -0.022 4.022 4 C -0.026 4.026 5 N -0.293 5.293 6 C 0.107 3.893 7 C -0.586 4.586 8 H 0.038 0.962 9 C -0.185 4.185 10 N -0.581 5.581 11 Si 0.773 3.227 12 H -0.169 1.169 13 H -0.209 1.209 14 H -0.172 1.172 15 C 0.353 3.647 16 O -0.436 6.436 17 C -0.070 4.070 18 C -0.249 4.249 19 N 0.582 4.418 20 O -0.348 6.348 21 O -0.393 6.393 22 C -0.066 4.066 23 C -0.135 4.135 24 N -0.084 5.084 25 N 0.002 4.998 26 C -0.057 4.057 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.157 0.843 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.848 -10.749 12.588 26.620 hybrid contribution 1.479 1.435 -1.066 2.320 sum -19.369 -9.315 11.522 24.386 Atomic orbital electron populations 1.22974 0.79129 1.04069 1.01105 1.87845 1.21818 1.27974 1.95608 1.22925 0.91151 0.85445 1.02682 1.22021 0.95930 1.01451 0.83243 1.47882 1.64176 1.05527 1.11680 1.19555 0.96023 0.89774 0.83979 1.21429 0.95470 1.29401 1.12330 0.96225 1.25910 0.97961 0.95133 0.99457 1.70074 1.20745 1.34112 1.33149 0.85668 0.79022 0.80160 0.77819 1.16945 1.20889 1.17242 1.17223 0.78711 0.82878 0.85914 1.90842 1.48379 1.75695 1.28712 1.20776 0.90782 0.99426 0.95981 1.21199 0.88437 1.11452 1.03830 1.42603 1.01854 0.99597 0.97709 1.94505 1.92630 1.08577 1.39055 1.94584 1.27808 1.67517 1.49357 1.22283 0.90688 0.94749 0.98856 1.20487 0.99703 1.04102 0.89246 1.73320 1.16707 1.19533 0.98815 1.45696 1.13363 1.25299 1.15443 1.22932 0.81530 1.05564 0.95630 0.93479 0.87954 0.92717 0.88975 0.91746 0.90528 0.87694 0.95017 0.91521 0.92065 0.87434 0.86810 0.90956 0.87773 0.84282 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.32 113.37 1.17 1.44 16 2 O -0.41 -8.30 6.20 -148.98 -0.92 -9.22 16 3 C 0.06 1.21 6.27 71.98 0.45 1.66 16 4 C 0.10 3.07 5.74 86.38 0.50 3.57 16 5 N -0.56 -23.28 2.42 -830.35 -2.01 -25.29 16 6 C 0.23 10.68 4.24 85.63 0.36 11.04 16 7 C -0.55 -32.41 9.94 25.60 0.25 -32.15 16 8 H 0.02 1.34 8.06 -2.91 -0.02 1.32 16 9 C 0.01 0.83 5.47 84.65 0.46 1.29 16 10 N -0.94 -60.02 13.96 21.44 0.30 -59.72 16 11 Si 0.95 42.69 27.47 68.60 1.88 44.57 16 12 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 15 C 0.57 24.83 6.69 86.59 0.58 25.41 16 16 O -0.56 -29.18 16.70 -4.14 -0.07 -29.25 16 17 C 0.07 2.41 4.50 40.79 0.18 2.59 16 18 C -0.16 -5.55 5.93 36.76 0.22 -5.33 16 19 N 0.05 2.18 4.45 -45.55 -0.20 1.98 16 20 O -0.12 -4.76 18.71 18.88 0.35 -4.41 16 21 O -0.18 -8.12 19.26 18.88 0.36 -7.76 16 22 C 0.09 2.53 7.22 43.05 0.31 2.84 16 23 C -0.08 -1.43 10.45 71.23 0.74 -0.69 16 24 N -0.25 -6.41 11.90 -47.50 -0.57 -6.97 16 25 N -0.21 -5.77 3.27 -356.02 -1.16 -6.93 16 26 C 0.08 1.44 9.17 127.77 1.17 2.61 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.75 6.87 -2.38 -0.02 0.73 16 29 H 0.05 0.53 8.13 -2.39 -0.02 0.51 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.37 8.04 -2.39 -0.02 1.35 16 32 H 0.08 2.53 5.38 -2.39 -0.01 2.52 16 33 H 0.10 3.44 8.12 -2.38 -0.02 3.42 16 34 H 0.03 1.58 6.50 -2.38 -0.02 1.56 16 35 H 0.07 2.68 7.40 -2.39 -0.02 2.67 16 36 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.14 1.42 7.03 -2.38 -0.02 1.40 16 42 H 0.10 2.05 5.93 -2.39 -0.01 2.03 16 Total: -1.00 -84.36 359.64 5.38 -78.99 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.00 Total: 9.74 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 6.40 Total: 14.27 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -3.64 Total: -96.93 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.28 Total: -50.64 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.57 kcal Total: -84.36 5.38 -78.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610987932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.852 kcal (2) G-P(sol) polarization free energy of solvation -84.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds