Wall clock time and date at job start Fri Apr 10 2020 18:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29013 * 126.44137 * 2 1 4 4 N 1.28743 * 108.80880 * 180.24780 * 3 2 1 5 5 N 1.28839 * 109.39919 * 359.75038 * 4 3 2 6 6 C 1.31074 * 107.98741 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.65739 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47123 * 94.89044 * 7 6 5 9 9 C 1.34774 * 119.99561 * 184.84059 * 8 7 6 10 10 O 1.21668 * 120.00377 * 4.77454 * 9 8 7 11 11 C 1.46890 * 119.99477 * 184.77428 * 9 8 7 12 12 C 1.36125 * 125.43791 * 185.51660 * 11 9 8 13 13 C 1.41695 * 107.75424 * 180.24387 * 12 11 9 14 14 C 1.40022 * 133.35655 * 179.82226 * 13 12 11 15 15 C 1.36578 * 119.82960 * 179.97438 * 14 13 12 16 16 C 1.38854 * 120.60369 * 0.02562 * 15 14 13 17 17 C 1.37842 * 120.63236 * 359.97438 * 16 15 14 18 18 C 1.39088 * 119.81290 * 0.02562 * 17 16 15 19 19 N 1.37842 * 133.16004 * 180.02562 * 18 17 16 20 20 C 1.36889 * 125.61864 * 359.93983 * 19 18 17 21 21 H 1.07999 * 120.00028 * 129.21414 * 20 19 18 22 22 C 1.39004 * 120.00068 * 309.20441 * 20 19 18 23 23 N 1.31349 * 120.00296 * 4.39232 * 22 20 19 24 24 Si 1.86800 * 120.00223 * 184.11451 * 22 20 19 25 25 H 1.48501 * 109.46925 * 275.22125 * 24 22 20 26 26 H 1.48507 * 109.47154 * 35.21729 * 24 22 20 27 27 H 1.48498 * 109.47482 * 155.21689 * 24 22 20 28 28 H 1.08999 * 109.47029 * 270.17295 * 1 2 3 29 29 H 1.08998 * 109.47186 * 30.17443 * 1 2 3 30 30 H 1.09003 * 109.47386 * 150.17728 * 1 2 3 31 31 H 1.08997 * 109.47139 * 334.89062 * 7 6 5 32 32 H 1.08993 * 109.46692 * 214.89239 * 7 6 5 33 33 H 0.96992 * 119.99870 * 4.83681 * 8 7 6 34 34 H 1.08004 * 126.12353 * 0.02562 * 12 11 9 35 35 H 1.07998 * 120.08153 * 359.94163 * 14 13 12 36 36 H 1.08004 * 119.69453 * 180.02562 * 15 14 13 37 37 H 1.07999 * 119.68086 * 179.97438 * 16 15 14 38 38 H 1.08004 * 120.09445 * 180.02562 * 17 16 15 39 39 H 0.96998 * 120.00218 * 174.72162 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4582 0.6479 -0.0053 5 7 3.4980 -0.6399 -0.0034 6 6 2.2644 -1.0829 0.0038 7 6 1.8262 -2.5248 0.0078 8 7 1.5790 -2.9562 1.3859 9 6 1.2700 -4.2424 1.6441 10 8 1.2813 -5.0630 0.7459 11 6 0.9195 -4.6534 3.0101 12 6 0.6936 -5.9330 3.4159 13 6 0.3806 -5.8993 4.7974 14 6 0.0598 -6.8887 5.7348 15 6 -0.1991 -6.5395 7.0296 16 6 -0.1478 -5.2100 7.4269 17 6 0.1658 -4.2182 6.5225 18 6 0.4333 -4.5493 5.1983 19 7 0.7678 -3.8028 4.0889 20 6 0.9201 -2.4427 4.0594 21 1 1.8120 -2.0083 3.6327 22 6 -0.0734 -1.6207 4.5785 23 7 -1.1180 -2.1489 5.1745 24 14 0.0806 0.2354 4.4353 25 1 0.9030 0.7519 5.5587 26 1 0.7317 0.5801 3.1458 27 1 -1.2703 0.8498 4.4874 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3634 -0.8916 -0.5111 31 1 2.6086 -3.1435 -0.4318 32 1 0.9110 -2.6280 -0.5750 33 1 1.6378 -2.3162 2.1123 34 1 0.7408 -6.8155 2.7951 35 1 0.0166 -7.9252 5.4345 36 1 -0.4459 -7.3045 7.7509 37 1 -0.3555 -4.9506 8.4545 38 1 0.2036 -3.1870 6.8411 39 1 -1.7726 -1.5761 5.6037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616172968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:35 Heat of formation + Delta-G solvation = 150.401269 kcal Electronic energy + Delta-G solvation = -27540.960849 eV Core-core repulsion = 23680.286330 eV Total energy + Delta-G solvation = -3860.674518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.25232 -40.61646 -38.76768 -36.04157 -35.87012 -35.02724 -33.72747 -32.35173 -30.85795 -29.34648 -28.80105 -28.29952 -26.88886 -25.18673 -23.58278 -23.09851 -21.86111 -21.11028 -20.24687 -19.55446 -18.43170 -17.51756 -17.40778 -16.66305 -15.94464 -15.68899 -15.15723 -14.98996 -14.81011 -14.51283 -14.18167 -13.91398 -13.69495 -13.51283 -13.18091 -13.01016 -12.72853 -12.65409 -12.45461 -12.13772 -12.04486 -11.83656 -11.65378 -11.36410 -11.22517 -10.96633 -10.89018 -10.78553 -10.39693 -10.27313 -9.86339 -9.61591 -9.46458 -8.91818 -8.70589 -7.33345 -6.99154 -6.64458 -4.93969 1.06442 1.70719 1.87413 2.11935 2.62462 2.76332 2.77498 2.80160 2.97894 3.49166 3.51570 3.86695 4.05806 4.12192 4.40330 4.43772 4.58751 4.72959 4.97355 5.06428 5.20387 5.35138 5.43186 5.60941 5.61620 5.77282 5.88513 6.00222 6.06218 6.32652 6.48373 6.55877 6.59035 6.69267 6.78612 6.99762 7.03085 7.35789 7.47336 7.55400 7.75779 7.80693 7.92158 8.19699 8.46822 8.52173 8.70087 9.13494 9.98045 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.004831 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.300940 B = 5794.148580 C = 7175.272838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.295 5.295 3 N -0.092 5.092 4 N -0.078 5.078 5 N -0.285 5.285 6 C 0.172 3.828 7 C 0.203 3.797 8 N -0.729 5.729 9 C 0.605 3.395 10 O -0.550 6.550 11 C -0.016 4.016 12 C -0.157 4.157 13 C -0.135 4.135 14 C -0.086 4.086 15 C -0.159 4.159 16 C -0.144 4.144 17 C -0.054 4.054 18 C 0.116 3.884 19 N -0.267 5.267 20 C -0.378 4.378 21 H 0.100 0.900 22 C 0.065 3.935 23 N -0.815 5.815 24 Si 0.918 3.082 25 H -0.264 1.264 26 H -0.268 1.268 27 H -0.271 1.271 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.416 0.584 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 2.211 -4.311 5.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.097 5.097 3 N -0.078 5.078 4 N -0.072 5.072 5 N -0.136 5.136 6 C -0.107 4.107 7 C 0.076 3.924 8 N -0.393 5.393 9 C 0.396 3.604 10 O -0.428 6.428 11 C -0.130 4.130 12 C -0.185 4.185 13 C -0.140 4.140 14 C -0.105 4.105 15 C -0.178 4.178 16 C -0.165 4.165 17 C -0.074 4.074 18 C 0.001 3.999 19 N 0.068 4.932 20 C -0.505 4.505 21 H 0.117 0.883 22 C -0.149 4.149 23 N -0.444 5.444 24 Si 0.742 3.258 25 H -0.189 1.189 26 H -0.192 1.192 27 H -0.195 1.195 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.263 0.737 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.212 3.158 -4.985 6.024 hybrid contribution -0.983 0.847 0.464 1.378 sum -2.195 4.005 -4.521 6.427 Atomic orbital electron populations 1.22566 0.71156 1.06610 1.06589 1.48410 1.10943 1.04216 1.46151 1.78868 0.97971 1.12741 1.18191 1.78621 1.09670 1.03726 1.15152 1.75046 1.17434 1.03498 1.17595 1.26050 0.86893 0.94199 1.03541 1.19550 1.02653 0.83175 0.87037 1.46699 1.72398 1.12043 1.08121 1.17208 0.75320 0.80892 0.87024 1.90748 1.54309 1.51776 1.45992 1.20032 1.14217 0.91396 0.87383 1.20431 1.09227 0.94897 0.93938 1.18058 1.08816 0.93102 0.93975 1.20074 1.00774 0.97101 0.92529 1.20298 1.06030 0.95804 0.95695 1.20613 1.04697 0.92813 0.98331 1.20081 0.98354 0.98693 0.90238 1.18349 1.03453 0.89083 0.88980 1.39831 1.45623 1.04524 1.03224 1.19262 1.04908 0.78880 1.47446 0.88321 1.25673 0.93630 1.01068 0.94560 1.69890 1.09418 1.37372 1.27673 0.86095 0.78733 0.80955 0.80048 1.18856 1.19244 1.19503 0.87832 0.87265 0.87185 0.87044 0.89101 0.73727 0.84772 0.87638 0.87821 0.87602 0.86581 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 11.25 59.85 0.67 1.32 16 2 N -0.29 -3.96 3.75 -65.03 -0.24 -4.20 16 3 N -0.09 -1.44 13.29 60.35 0.80 -0.64 16 4 N -0.08 -1.35 13.43 60.35 0.81 -0.54 16 5 N -0.29 -4.83 12.36 32.70 0.40 -4.43 16 6 C 0.17 2.50 7.50 -155.43 -1.17 1.33 16 7 C 0.20 2.79 5.98 -5.19 -0.03 2.76 16 8 N -0.73 -12.64 5.43 -62.73 -0.34 -12.98 16 9 C 0.61 12.26 7.77 -12.76 -0.10 12.16 16 10 O -0.55 -11.67 16.83 5.22 0.09 -11.58 16 11 C -0.02 -0.36 6.77 -82.25 -0.56 -0.92 16 12 C -0.16 -3.42 10.55 -39.02 -0.41 -3.83 16 13 C -0.13 -2.99 6.16 -106.89 -0.66 -3.65 16 14 C -0.09 -1.66 10.06 -39.51 -0.40 -2.06 16 15 C -0.16 -2.91 9.97 -39.95 -0.40 -3.30 16 16 C -0.14 -2.77 10.02 -39.50 -0.40 -3.17 16 17 C -0.05 -1.19 8.60 -39.41 -0.34 -1.53 16 18 C 0.12 2.73 6.02 -83.83 -0.50 2.22 16 19 N -0.27 -6.24 2.80 -56.08 -0.16 -6.40 16 20 C -0.38 -8.45 7.88 -15.01 -0.12 -8.57 16 21 H 0.10 2.14 6.06 -52.49 -0.32 1.82 16 22 C 0.07 1.42 5.16 -17.47 -0.09 1.33 16 23 N -0.82 -18.83 10.63 55.50 0.59 -18.24 16 24 Si 0.92 16.69 29.56 -169.99 -5.02 11.67 16 25 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 26 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 27 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.72 7.23 -51.93 -0.38 0.34 16 31 H 0.11 1.50 8.10 -51.93 -0.42 1.08 16 32 H 0.09 1.01 7.31 -51.93 -0.38 0.63 16 33 H 0.42 7.65 4.27 -40.82 -0.17 7.47 16 34 H 0.13 2.67 8.06 -52.48 -0.42 2.25 16 35 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.63 6.93 -52.48 -0.36 2.27 16 39 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -29.02 339.81 -6.15 -35.16 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -3.70 Total: 12.99 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -4.49 Total: -5.93 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 1.87 Total: -47.43 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.02 Total: 11.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.02 -6.15 -35.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616172968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.566 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds