Wall clock time and date at job start Fri Apr 10 2020 18:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47112 * 2 1 4 4 N 1.35033 * 126.38189 * 265.02394 * 3 2 1 5 5 H 0.96996 * 124.88599 * 0.02562 * 4 3 2 6 6 N 1.28464 * 110.22850 * 179.97438 * 4 3 2 7 7 C 1.31810 * 110.07554 * 359.97438 * 6 4 3 8 8 C 1.47711 * 126.51814 * 180.02562 * 7 6 4 9 9 O 1.21571 * 119.99553 * 174.77995 * 8 7 6 10 10 N 1.34777 * 120.00274 * 354.50501 * 8 7 6 11 11 C 1.46499 * 119.99636 * 354.91474 * 10 8 7 12 12 C 1.50705 * 109.47149 * 85.44557 * 11 10 8 13 13 H 1.07997 * 119.99597 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99765 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99306 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00242 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46964 * 90.00143 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99871 * 16 14 12 19 19 H 1.48497 * 109.47244 * 330.00326 * 16 14 12 20 20 C 1.46493 * 120.00189 * 174.91094 * 10 8 7 21 21 C 1.53004 * 109.46967 * 84.85463 * 20 10 8 22 22 O 1.42897 * 109.47174 * 64.99968 * 21 20 10 23 23 C 1.42897 * 114.00049 * 180.02562 * 22 21 20 24 24 C 1.35363 * 126.38759 * 85.34222 * 3 2 1 25 25 N 1.48005 * 127.24848 * 359.97438 * 24 3 2 26 26 O 1.21800 * 120.00218 * 270.21208 * 25 24 3 27 27 O 1.21803 * 120.00273 * 90.21229 * 25 24 3 28 28 H 1.08992 * 109.47263 * 300.00457 * 1 2 3 29 29 H 1.09003 * 109.46879 * 60.00491 * 1 2 3 30 30 H 1.09001 * 109.46802 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47263 * 239.99543 * 2 1 3 32 32 H 1.09003 * 109.46879 * 119.99509 * 2 1 3 33 33 H 1.09004 * 109.47110 * 205.44084 * 11 10 8 34 34 H 1.08992 * 109.47664 * 325.44275 * 11 10 8 35 35 H 0.97008 * 119.99432 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.47586 * 204.85621 * 20 10 8 37 37 H 1.09000 * 109.47110 * 324.85818 * 20 10 8 38 38 H 1.08996 * 109.47022 * 185.00093 * 21 20 10 39 39 H 1.09005 * 109.47091 * 305.00216 * 21 20 10 40 40 H 1.09002 * 109.47003 * 299.99727 * 23 22 21 41 41 H 1.08998 * 109.47418 * 60.00105 * 23 22 21 42 42 H 1.09003 * 109.46979 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3883 2.1446 -1.0830 5 1 2.3592 1.8245 -1.9982 6 7 2.7698 3.3184 -0.7270 7 6 2.6915 3.4418 0.5830 8 6 3.0399 4.6385 1.3756 9 8 2.8326 4.6557 2.5734 10 7 3.5928 5.7092 0.7719 11 6 3.9508 5.6461 -0.6473 12 6 2.7459 5.9890 -1.4851 13 1 1.8073 6.2295 -1.0080 14 6 2.8420 5.9958 -2.8605 15 7 1.7903 6.2946 -3.5915 16 14 4.4656 5.5806 -3.6855 17 1 4.5339 4.1185 -3.9360 18 1 4.5659 6.3091 -4.9756 19 1 5.5879 5.9841 -2.8007 20 6 3.8356 6.9360 1.5347 21 6 5.1799 6.8294 2.2576 22 8 6.2346 6.7676 1.2954 23 6 7.5394 6.6653 1.8689 24 6 2.2166 2.2074 1.0861 25 7 1.9684 1.8529 2.5015 26 8 0.8741 2.0543 2.9969 27 8 2.8585 1.3598 3.1710 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.7503 6.3581 -0.8523 34 1 4.2891 4.6394 -0.8923 35 1 1.8580 6.2997 -4.5592 36 1 3.8548 7.7885 0.8557 37 1 3.0394 7.0724 2.2666 38 1 5.3201 7.7026 2.8947 39 1 5.1930 5.9273 2.8694 40 1 7.7288 7.5349 2.4982 41 1 7.6011 5.7597 2.4723 42 1 8.2836 6.6238 1.0736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618205713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:37 Heat of formation + Delta-G solvation = -18.438327 kcal Electronic energy + Delta-G solvation = -29453.598046 eV Core-core repulsion = 25246.000422 eV Total energy + Delta-G solvation = -4207.597623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.53138 -42.90682 -40.92594 -38.78399 -37.62621 -36.97369 -35.67257 -34.57165 -33.82262 -31.93459 -30.86789 -29.48631 -27.76228 -27.27409 -25.87719 -24.86119 -24.37816 -23.36911 -22.61843 -20.34311 -19.97353 -19.89358 -19.08100 -18.78846 -18.22778 -17.83314 -17.62020 -17.29578 -17.09231 -16.59708 -16.30283 -15.92511 -15.53338 -15.33647 -15.12361 -14.81930 -14.41153 -14.03760 -13.69883 -13.63093 -13.27302 -12.89609 -12.86533 -12.84441 -12.76642 -12.64814 -12.48932 -12.34236 -12.23371 -12.10927 -12.04248 -11.84433 -11.62906 -11.42398 -11.15778 -10.80063 -10.65773 -10.58001 -9.63540 -8.23185 -6.24889 -0.61408 0.03123 0.16619 0.24028 1.34811 1.40966 1.50316 1.51702 1.91513 1.97532 2.37701 2.84335 2.93238 3.07287 3.12928 3.31530 3.60986 4.00479 4.04253 4.06614 4.12554 4.16556 4.32587 4.48676 4.50424 4.50917 4.55300 4.73132 4.79239 4.83217 4.83375 4.86261 4.97393 5.14901 5.21696 5.46488 5.49646 5.63489 6.09132 6.20911 6.29387 6.43716 6.46439 6.71839 6.90385 7.36340 8.93314 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.006198 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.736802 B = 4516.341977 C = 6485.612544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 C 0.116 3.884 4 N -0.350 5.350 5 H 0.475 0.525 6 N -0.180 5.180 7 C 0.016 3.984 8 C 0.583 3.417 9 O -0.577 6.577 10 N -0.565 5.565 11 C 0.223 3.777 12 C -0.503 4.503 13 H 0.024 0.976 14 C 0.035 3.965 15 N -0.944 5.944 16 Si 0.928 3.072 17 H -0.255 1.255 18 H -0.289 1.289 19 H -0.253 1.253 20 C 0.114 3.886 21 C 0.056 3.944 22 O -0.411 6.411 23 C 0.027 3.973 24 C -0.140 4.140 25 N 0.070 4.930 26 O -0.154 6.154 27 O -0.140 6.140 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 -11.239 4.105 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 C -0.014 4.014 4 N -0.067 5.067 5 H 0.326 0.674 6 N -0.014 5.014 7 C -0.147 4.147 8 C 0.369 3.631 9 O -0.457 6.457 10 N -0.293 5.293 11 C 0.102 3.898 12 C -0.541 4.541 13 H 0.043 0.957 14 C -0.163 4.163 15 N -0.584 5.584 16 Si 0.752 3.248 17 H -0.180 1.180 18 H -0.215 1.215 19 H -0.177 1.177 20 C -0.008 4.008 21 C -0.021 4.021 22 O -0.330 6.330 23 C -0.069 4.069 24 C -0.234 4.234 25 N 0.601 4.399 26 O -0.375 6.375 27 O -0.365 6.365 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.300 -10.348 2.624 12.396 hybrid contribution 0.001 -0.204 0.316 0.376 sum 6.301 -10.552 2.940 12.637 Atomic orbital electron populations 1.21848 0.92206 1.04647 1.02380 1.20723 0.97777 0.84385 1.07547 1.21496 0.98233 0.97577 0.84081 1.43661 1.44763 1.07573 1.10753 0.67366 1.74770 1.14547 1.00778 1.11337 1.21698 1.07926 0.94561 0.90523 1.17089 0.78002 0.82387 0.85622 1.90747 1.57846 1.82702 1.14439 1.47786 1.57087 1.11932 1.12514 1.19842 0.95628 0.98457 0.75902 1.21137 0.95778 1.45897 0.91330 0.95725 1.25409 0.99271 0.94327 0.97334 1.70051 1.31600 1.50829 1.05953 0.86015 0.81026 0.79688 0.78103 1.17966 1.21496 1.17720 1.21718 0.96182 0.86490 0.96378 1.22893 0.86723 1.01349 0.91144 1.87923 1.15835 1.95137 1.34138 1.22905 0.83499 1.00619 0.99899 1.20582 1.21967 0.97864 0.82962 1.42176 0.99572 0.96856 1.01342 1.94522 1.11895 1.56976 1.74075 1.94482 1.38597 1.43024 1.60390 0.94083 0.91642 0.87907 0.84403 0.88371 0.93728 0.93424 0.92546 0.88533 0.88910 0.89235 0.94173 0.92224 0.94187 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.90 71.98 0.71 -1.73 16 2 C -0.07 -1.04 6.49 29.85 0.19 -0.85 16 3 C 0.12 3.09 6.48 41.40 0.27 3.36 16 4 N -0.35 -9.74 6.83 -47.93 -0.33 -10.06 16 5 H 0.47 9.04 8.96 -220.00 -1.97 7.07 16 6 N -0.18 -7.04 7.85 -48.18 -0.38 -7.42 16 7 C 0.02 0.66 6.72 42.46 0.29 0.95 16 8 C 0.58 26.77 7.60 86.75 0.66 27.43 16 9 O -0.58 -28.00 16.12 -3.94 -0.06 -28.07 16 10 N -0.57 -24.76 2.42 -829.72 -2.01 -26.77 16 11 C 0.22 10.28 3.69 85.63 0.32 10.60 16 12 C -0.50 -26.82 8.40 25.60 0.22 -26.61 16 13 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 14 C 0.03 1.85 5.47 84.65 0.46 2.32 16 15 N -0.94 -54.64 13.96 21.45 0.30 -54.34 16 16 Si 0.93 40.10 27.47 68.60 1.88 41.99 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 20 C 0.11 4.21 5.68 86.38 0.49 4.70 16 21 C 0.06 1.75 6.25 71.98 0.45 2.20 16 22 O -0.41 -13.42 10.23 -148.98 -1.52 -14.94 16 23 C 0.03 0.62 11.01 113.37 1.25 1.87 16 24 C -0.14 -5.13 6.75 36.52 0.25 -4.89 16 25 N 0.07 2.69 3.95 -46.14 -0.18 2.51 16 26 O -0.15 -6.19 19.25 18.89 0.36 -5.82 16 27 O -0.14 -5.36 19.26 18.88 0.36 -5.00 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 2.06 6.77 -2.39 -0.02 2.05 16 34 H 0.05 2.17 5.28 -2.39 -0.01 2.15 16 35 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 36 H 0.10 3.47 8.03 -2.39 -0.02 3.45 16 37 H 0.09 3.33 7.66 -2.39 -0.02 3.31 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.36 8.05 -2.38 -0.02 1.34 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.63 366.91 3.01 -73.62 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.96 Total: 14.95 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 5.55 Total: 19.35 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -2.60 Total: -96.08 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.86 Total: -53.83 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.88 Total: 41.99 kcal Total: -76.63 3.01 -73.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618205713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.181 kcal (2) G-P(sol) polarization free energy of solvation -76.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds