Wall clock time and date at job start Fri Apr 10 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42102 * 109.47267 * 2 1 4 4 C 1.81399 * 103.00235 * 243.60920 * 2 1 3 5 5 C 1.53006 * 115.55007 * 181.55276 * 4 2 1 6 6 N 1.46502 * 109.46869 * 36.30623 * 5 4 2 7 7 C 1.34771 * 119.99907 * 185.79302 * 6 5 4 8 8 O 1.21845 * 119.99855 * 359.97438 * 7 6 5 9 9 N 1.33838 * 120.00295 * 180.02562 * 7 6 5 10 10 C 1.32932 * 119.99938 * 179.97438 * 9 7 6 11 11 C 1.41207 * 126.38115 * 0.02823 * 10 9 7 12 12 C 1.34953 * 108.24222 * 179.97438 * 11 10 9 13 13 N 1.36458 * 108.94925 * 359.97438 * 12 11 10 14 14 C 1.46499 * 125.84741 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47136 * 84.97906 * 14 13 12 16 16 H 1.08005 * 119.99655 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99878 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99703 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99944 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46790 * 90.00238 * 19 17 15 21 21 H 1.48502 * 109.46904 * 209.99804 * 19 17 15 22 22 H 1.48501 * 109.47116 * 330.00026 * 19 17 15 23 23 N 1.37421 * 126.37601 * 179.70626 * 10 9 7 24 24 H 0.97011 * 126.36158 * 0.03179 * 23 10 9 25 25 C 1.53001 * 117.51891 * 327.25985 * 4 2 1 26 26 C 1.53002 * 60.00022 * 107.47778 * 25 4 2 27 27 H 1.08992 * 109.47397 * 177.83386 * 1 2 3 28 28 H 1.09002 * 109.46798 * 297.83899 * 1 2 3 29 29 H 1.09001 * 109.46716 * 57.83379 * 1 2 3 30 30 H 1.09004 * 109.46836 * 156.30496 * 5 4 2 31 31 H 1.08994 * 109.46954 * 276.30547 * 5 4 2 32 32 H 0.97001 * 119.99827 * 5.80079 * 6 5 4 33 33 H 1.08000 * 125.87507 * 359.94841 * 11 10 9 34 34 H 1.07997 * 125.52602 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46682 * 204.96931 * 14 13 12 36 36 H 1.08993 * 109.47758 * 324.97224 * 14 13 12 37 37 H 0.96993 * 120.00335 * 180.02562 * 18 17 15 38 38 H 1.08994 * 117.49376 * 214.97026 * 25 4 2 39 39 H 1.08997 * 117.49431 * 359.97438 * 25 4 2 40 40 H 1.09000 * 117.49689 * 252.50703 * 26 25 4 41 41 H 1.08998 * 117.49719 * 107.49160 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7151 -0.9669 -1.8645 6 7 4.4117 -1.2881 -0.6163 7 6 5.7563 -1.3770 -0.5986 8 8 6.3926 -1.1907 -1.6209 9 7 6.3927 -1.6708 0.5415 10 6 7.7190 -1.7590 0.5588 11 6 8.5853 -1.5692 -0.5400 12 6 9.8536 -1.7444 -0.1132 13 7 9.8360 -2.0391 1.2191 14 6 11.0101 -2.2987 2.0559 15 6 11.5734 -0.9914 2.5506 16 1 11.1040 -0.0602 2.2694 17 6 12.6881 -0.9841 3.3622 18 7 13.1799 0.1567 3.7935 19 14 13.4995 -2.5947 3.8491 20 1 14.5372 -2.9487 2.8475 21 1 14.1309 -2.4468 5.1850 22 1 12.4754 -3.6688 3.9017 23 7 8.5026 -2.0457 1.6506 24 1 8.1906 -2.2218 2.5522 25 6 1.2691 -1.8633 -2.1041 26 6 1.3097 -0.4888 -2.7751 27 1 -0.3634 -1.0268 -0.0388 28 1 -0.3633 0.4799 0.9088 29 1 -0.3633 0.5471 -0.8700 30 1 3.8544 -1.7794 -2.5778 31 1 4.1211 -0.0448 -2.2803 32 1 3.9050 -1.4368 0.1974 33 1 8.2847 -1.3263 -1.5485 34 1 10.7388 -1.6642 -0.7265 35 1 10.7204 -2.9148 2.9072 36 1 11.7658 -2.8214 1.4696 37 1 13.9642 0.1620 4.3641 38 1 1.7058 -2.7015 -2.6471 39 1 0.3968 -2.1007 -1.4951 40 1 0.4640 0.1781 -2.6077 41 1 1.7730 -0.4229 -3.7595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619661482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:44 Heat of formation + Delta-G solvation = 78.068491 kcal Electronic energy + Delta-G solvation = -24499.639249 eV Core-core repulsion = 20738.979346 eV Total energy + Delta-G solvation = -3760.659903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82709 -39.08322 -37.78601 -35.87934 -34.53415 -33.68906 -32.87192 -31.07636 -30.97055 -29.22949 -27.58978 -26.37663 -23.00016 -22.82886 -21.87350 -21.50378 -21.23241 -19.75408 -17.82703 -17.40018 -17.22843 -16.76302 -16.21741 -15.52584 -15.30763 -15.04928 -14.70918 -14.53276 -14.43176 -14.20486 -14.01068 -13.80723 -13.31857 -13.11484 -13.07724 -12.89412 -12.71178 -12.63669 -12.31066 -12.22429 -11.84572 -11.50342 -11.15720 -11.02703 -10.72556 -10.61680 -10.27419 -10.04396 -9.76285 -9.64104 -9.06220 -9.02831 -8.69256 -8.44914 -8.39559 -6.85725 -6.49512 -4.58000 1.22375 1.73284 2.01440 2.32593 2.97609 2.98511 3.01962 3.08553 3.13753 3.55959 3.73003 3.98992 4.30383 4.39612 4.43108 4.52244 4.64969 4.76566 4.78939 4.88301 5.17887 5.21875 5.22709 5.37495 5.62163 5.65096 5.65813 5.70225 5.78539 5.92248 6.06648 6.15752 6.35325 6.66035 6.94835 6.97844 7.30744 7.55419 7.74195 8.02286 8.25169 8.40202 8.54962 9.02762 9.57013 10.62100 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.002194 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.293092 B =12761.366594 C =13223.219585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.502 4.502 2 S 1.290 4.710 3 O -0.834 6.834 4 C -0.467 4.467 5 C 0.202 3.798 6 N -0.733 5.733 7 C 0.688 3.312 8 O -0.628 6.628 9 N -0.709 5.709 10 C 0.490 3.510 11 C -0.330 4.330 12 C 0.164 3.836 13 N -0.346 5.346 14 C 0.230 3.770 15 C -0.565 4.565 16 H 0.086 0.914 17 C 0.083 3.917 18 N -0.876 5.876 19 Si 0.875 3.125 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.265 1.265 23 N -0.469 5.469 24 H 0.445 0.555 25 C -0.125 4.125 26 C -0.153 4.153 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.393 0.607 33 H 0.184 0.816 34 H 0.188 0.812 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.272 0.728 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.810 -9.106 -6.681 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 1.485 4.515 3 O -0.829 6.829 4 C -0.564 4.564 5 C 0.076 3.924 6 N -0.389 5.389 7 C 0.387 3.613 8 O -0.510 6.510 9 N -0.474 5.474 10 C 0.236 3.764 11 C -0.362 4.362 12 C 0.020 3.980 13 N -0.132 5.132 14 C 0.112 3.888 15 C -0.602 4.602 16 H 0.104 0.896 17 C -0.124 4.124 18 N -0.512 5.512 19 Si 0.700 3.300 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.189 1.189 23 N -0.192 5.192 24 H 0.292 0.708 25 C -0.163 4.163 26 C -0.192 4.192 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.227 0.773 33 H 0.201 0.799 34 H 0.205 0.795 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.879 -8.693 -5.667 22.425 hybrid contribution -0.314 0.557 -1.083 1.258 sum -20.193 -8.136 -6.751 22.793 Atomic orbital electron populations 1.27891 1.22653 1.08073 1.07282 1.70606 0.85658 0.98848 0.96361 1.93156 1.73288 1.36423 1.80033 1.29359 0.98996 1.13207 1.14831 1.20145 0.84423 1.01156 0.86668 1.44696 1.05685 1.77269 1.11204 1.16546 0.82286 0.77424 0.85009 1.90742 1.65239 1.57352 1.37693 1.68020 1.04155 1.45415 1.29761 1.18669 0.89124 0.84368 0.84199 1.22421 0.90666 1.20461 1.02682 1.22803 1.00307 0.92138 0.82716 1.47420 0.95510 1.62396 1.07864 1.20307 0.78969 0.99001 0.90558 1.21279 1.13886 0.92152 1.32925 0.89643 1.24837 0.96115 0.96661 0.94746 1.69857 1.22830 1.25464 1.33026 0.86888 0.80493 0.83360 0.79220 1.19386 1.20332 1.18927 1.44352 0.95888 1.68130 1.10879 0.70759 1.22959 0.99091 0.92306 1.01955 1.22951 0.99851 0.99740 0.96611 0.86740 0.87467 0.89911 0.91496 0.91294 0.77298 0.79870 0.79508 0.93377 0.92228 0.91733 0.87378 0.87663 0.88590 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.02 9.58 101.05 0.97 -2.05 16 2 S 1.29 11.82 12.30 -107.50 -1.32 10.50 16 3 O -0.83 -13.78 18.14 -35.23 -0.64 -14.42 16 4 C -0.47 -4.31 2.67 -90.61 -0.24 -4.55 16 5 C 0.20 2.63 5.82 -4.04 -0.02 2.61 16 6 N -0.73 -10.94 5.25 -65.42 -0.34 -11.28 16 7 C 0.69 13.41 8.47 -87.76 -0.74 12.66 16 8 O -0.63 -13.73 13.25 5.06 0.07 -13.67 16 9 N -0.71 -13.71 10.59 -15.79 -0.17 -13.88 16 10 C 0.49 9.39 8.07 -155.29 -1.25 8.14 16 11 C -0.33 -6.13 9.52 -39.62 -0.38 -6.51 16 12 C 0.16 2.73 11.45 -16.66 -0.19 2.54 16 13 N -0.35 -6.21 3.63 -62.24 -0.23 -6.44 16 14 C 0.23 4.39 5.26 -5.19 -0.03 4.36 16 15 C -0.56 -13.71 9.94 -34.44 -0.34 -14.06 16 16 H 0.09 2.39 8.06 -52.48 -0.42 1.97 16 17 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.88 -24.09 13.96 55.43 0.77 -23.31 16 19 Si 0.87 17.86 27.47 -169.99 -4.67 13.20 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.26 -5.00 6.54 56.52 0.37 -4.63 16 23 N -0.47 -8.13 7.38 31.33 0.23 -7.90 16 24 H 0.45 6.64 8.96 -182.55 -1.64 5.00 16 25 C -0.13 -0.74 9.56 -26.73 -0.26 -0.99 16 26 C -0.15 -1.19 9.64 -26.73 -0.26 -1.45 16 27 H 0.11 0.34 6.81 -51.93 -0.35 -0.01 16 28 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.08 0.56 6.70 -51.92 -0.35 0.22 16 30 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 31 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 32 H 0.39 4.72 7.30 -40.82 -0.30 4.42 16 33 H 0.18 3.62 5.77 -52.49 -0.30 3.32 16 34 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 35 H 0.05 0.88 7.20 -51.93 -0.37 0.51 16 36 H 0.06 1.04 7.57 -51.93 -0.39 0.65 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.11 0.61 8.06 -51.93 -0.42 0.19 16 39 H 0.11 0.35 6.46 -51.93 -0.34 0.02 16 40 H 0.10 0.68 6.53 -51.93 -0.34 0.34 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -37.02 356.31 -10.26 -47.28 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.49 Total: 11.89 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.84 Total: 2.67 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: 0.27 Total: -62.81 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.57 Total: -28.09 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.67 Total: 13.20 kcal Atomic # 16 Polarization: 11.82 SS G_CDS: -1.32 Total: 10.50 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.02 -10.26 -47.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619661482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.349 kcal (2) G-P(sol) polarization free energy of solvation -37.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds