Wall clock time and date at job start Fri Apr 10 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34963 * 125.52446 * 2 1 4 4 C 1.41208 * 108.24334 * 180.13604 * 3 2 1 5 5 N 1.32933 * 126.37754 * 179.88698 * 4 3 2 6 6 C 1.33823 * 120.00006 * 359.68677 * 5 4 3 7 7 O 1.21834 * 120.00325 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99991 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64478 * 359.96691 * 8 6 5 10 10 C 1.54331 * 107.26934 * 181.09286 * 9 8 6 11 11 C 1.55155 * 102.94346 * 22.18715 * 10 9 8 12 12 F 1.39908 * 111.03760 * 82.58748 * 11 10 9 13 13 C 1.52997 * 111.00696 * 206.42653 * 11 10 9 14 14 O 1.42898 * 109.47319 * 173.65300 * 13 11 10 15 15 C 1.47421 * 125.64877 * 180.02562 * 8 6 5 16 16 N 1.37427 * 107.24019 * 359.62258 * 4 3 2 17 17 H 0.96996 * 126.36386 * 180.22086 * 16 4 3 18 18 N 1.36449 * 125.52865 * 179.71396 * 2 1 3 19 19 C 1.46500 * 125.84897 * 0.02562 * 18 2 1 20 20 C 1.50700 * 109.47312 * 85.02379 * 19 18 2 21 21 H 1.08001 * 119.99782 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00073 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00102 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99645 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47303 * 59.99564 * 24 22 20 26 26 H 1.48507 * 109.46476 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47027 * 299.99197 * 24 22 20 28 28 H 1.08996 * 109.47669 * 270.28155 * 1 2 3 29 29 H 1.09001 * 109.47012 * 30.28129 * 1 2 3 30 30 H 1.09000 * 109.46984 * 150.27654 * 1 2 3 31 31 H 1.08003 * 125.87799 * 0.02582 * 3 2 1 32 32 H 1.09002 * 109.88212 * 300.50589 * 9 8 6 33 33 H 1.08993 * 109.88714 * 61.67647 * 9 8 6 34 34 H 1.09003 * 110.71714 * 263.82626 * 10 9 8 35 35 H 1.08997 * 110.72303 * 140.55619 * 10 9 8 36 36 H 1.09002 * 109.47153 * 53.64993 * 13 11 10 37 37 H 1.09001 * 109.46832 * 293.65183 * 13 11 10 38 38 H 0.96701 * 113.99881 * 180.02562 * 14 13 11 39 39 H 1.09000 * 110.36770 * 37.00265 * 15 8 6 40 40 H 1.09004 * 110.36992 * 274.67998 * 15 8 6 41 41 H 1.08998 * 109.47031 * 205.01636 * 19 18 2 42 42 H 1.09002 * 109.47578 * 325.02078 * 19 18 2 43 43 H 0.96994 * 119.99745 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6395 0.6789 -0.0032 5 7 4.7103 1.4667 -0.0063 6 6 4.5625 2.7967 -0.0129 7 8 3.4465 3.2857 -0.0156 8 7 5.6481 3.5954 -0.0155 9 6 7.0462 3.1408 -0.0110 10 6 7.9376 4.4005 0.0117 11 6 6.9910 5.4856 0.5897 12 9 6.9515 5.4250 1.9869 13 6 7.4021 6.8810 0.1157 14 8 6.4282 7.8354 0.5430 15 6 5.6303 5.0695 -0.0222 16 7 3.6385 -0.6953 0.0036 17 1 4.4192 -1.2710 0.0064 18 7 2.2999 -1.1104 0.0055 19 6 1.8321 -2.4987 0.0119 20 6 1.5554 -2.9421 -1.4015 21 1 1.7119 -2.2581 -2.2225 22 6 1.1014 -4.2208 -1.6466 23 7 0.9103 -5.0536 -0.6468 24 14 0.7577 -4.7701 -3.3986 25 1 2.0030 -4.6714 -4.2016 26 1 0.2836 -6.1774 -3.3921 27 1 -0.2862 -3.8984 -3.9949 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.9467 2.1220 0.0004 32 1 7.2365 2.5360 0.8757 33 1 7.2498 2.5589 -0.9098 34 1 8.2573 4.6649 -0.9962 35 1 8.7982 4.2523 0.6640 36 1 7.4673 6.8905 -0.9723 37 1 8.3728 7.1375 0.5401 38 1 6.6246 8.7439 0.2765 39 1 4.8092 5.4418 0.5904 40 1 5.5433 5.4433 -1.0424 41 1 2.5984 -3.1383 0.4498 42 1 0.9179 -2.5715 0.6011 43 1 0.5912 -5.9532 -0.8193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619795900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:52 Heat of formation + Delta-G solvation = -21.109236 kcal Electronic energy + Delta-G solvation = -27524.512231 eV Core-core repulsion = 23329.171577 eV Total energy + Delta-G solvation = -4195.340653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.70633 -40.82773 -39.24703 -37.57272 -36.43650 -34.29024 -33.10296 -32.18761 -31.75616 -30.47757 -29.33600 -27.46826 -26.95640 -25.85779 -23.40661 -22.73994 -21.42090 -20.56081 -19.62302 -19.13144 -17.75532 -17.18981 -16.91921 -16.66368 -16.34927 -15.71043 -15.41528 -15.07559 -14.96422 -14.88388 -14.55374 -14.14800 -13.95588 -13.43577 -13.22898 -13.13418 -12.83810 -12.72081 -12.67596 -12.52216 -12.23179 -12.07149 -11.96602 -11.76556 -11.51206 -11.31154 -11.03237 -11.00644 -10.87130 -10.51680 -10.43724 -10.35077 -9.64383 -9.42976 -8.90324 -8.81117 -8.31715 -8.23037 -6.84522 -6.46025 -4.63607 1.80372 2.09631 3.07869 3.13462 3.14083 3.17959 3.30530 3.57991 4.07140 4.11563 4.22707 4.31297 4.44194 4.62212 4.74648 4.82889 4.91413 4.95801 5.08940 5.12040 5.31286 5.46267 5.60672 5.69152 5.82967 5.85261 5.90504 5.95526 6.03356 6.05729 6.19084 6.39701 6.56108 6.63040 6.68404 6.96021 7.21729 7.34834 7.41550 7.54034 7.70440 7.89266 8.28009 8.45710 8.51467 9.06665 9.61956 10.54391 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.002329 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.944835 B =12017.356875 C =12310.062043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.189 3.811 3 C -0.334 4.334 4 C 0.488 3.512 5 N -0.709 5.709 6 C 0.705 3.295 7 O -0.626 6.626 8 N -0.619 5.619 9 C 0.124 3.876 10 C -0.150 4.150 11 C 0.105 3.895 12 F -0.190 7.190 13 C 0.068 3.932 14 O -0.563 6.563 15 C 0.117 3.883 16 N -0.471 5.471 17 H 0.444 0.556 18 N -0.345 5.345 19 C 0.256 3.744 20 C -0.556 4.556 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.887 5.887 24 Si 0.909 3.091 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.271 1.271 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.182 0.818 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.383 0.617 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 16.313 0.586 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.063 3.937 3 C -0.367 4.367 4 C 0.236 3.764 5 N -0.473 5.473 6 C 0.407 3.593 7 O -0.508 6.508 8 N -0.357 5.357 9 C 0.000 4.000 10 C -0.188 4.188 11 C 0.085 3.915 12 F -0.170 7.170 13 C -0.011 4.011 14 O -0.368 6.368 15 C -0.007 4.007 16 N -0.193 5.193 17 H 0.291 0.709 18 N -0.132 5.132 19 C 0.139 3.861 20 C -0.594 4.594 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.199 0.801 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.230 0.770 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.262 15.128 0.938 18.304 hybrid contribution 0.154 -0.064 -1.086 1.098 sum 10.416 15.065 -0.148 18.315 Atomic orbital electron populations 1.20639 0.86526 1.04958 1.03566 1.21275 0.94422 0.85545 0.92412 1.22187 0.91145 1.00241 1.23096 1.18669 0.91032 0.82050 0.84699 1.68025 1.28549 1.03549 1.47211 1.16093 0.81438 0.84654 0.77148 1.90743 1.23509 1.78538 1.58006 1.47005 1.05053 1.04619 1.79032 1.21663 0.80785 0.94935 1.02589 1.23285 0.98332 0.94511 1.02712 1.22031 0.97968 0.94507 0.76950 1.92887 1.97353 1.97347 1.29460 1.22556 0.91895 0.87628 0.98972 1.86568 1.49205 1.20200 1.80846 1.22339 0.96324 0.81060 1.01009 1.44363 0.98889 1.04867 1.71226 0.70916 1.47852 0.92544 1.08050 1.64722 1.19989 0.96399 0.70307 0.99383 1.21362 1.47614 0.98710 0.91730 0.91343 1.24947 0.94311 0.95829 0.98371 1.69888 1.44001 1.07086 1.31354 0.86366 0.79122 0.77820 0.83187 1.19894 1.20820 1.19659 0.89899 0.89400 0.89075 0.80103 0.91362 0.91153 0.88817 0.88786 0.91364 0.92079 0.76972 0.89268 0.90708 0.93201 0.91528 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.92 36.00 0.36 -1.09 16 2 C 0.19 3.52 6.92 -81.70 -0.57 2.95 16 3 C -0.33 -6.77 9.41 -39.62 -0.37 -7.14 16 4 C 0.49 10.11 8.07 -155.28 -1.25 8.85 16 5 N -0.71 -14.89 10.05 -15.79 -0.16 -15.04 16 6 C 0.71 15.07 8.40 -87.76 -0.74 14.33 16 7 O -0.63 -14.74 13.52 5.07 0.07 -14.67 16 8 N -0.62 -10.71 3.33 -176.48 -0.59 -11.29 16 9 C 0.12 1.65 6.82 -3.06 -0.02 1.63 16 10 C -0.15 -1.38 6.23 -24.89 -0.16 -1.54 16 11 C 0.10 1.20 1.38 -88.48 -0.12 1.08 16 12 F -0.19 -2.79 17.01 2.25 0.04 -2.75 16 13 C 0.07 0.54 6.32 37.16 0.23 0.77 16 14 O -0.56 -5.11 13.39 -35.23 -0.47 -5.58 16 15 C 0.12 1.71 5.94 -2.54 -0.02 1.69 16 16 N -0.47 -8.91 7.38 31.33 0.23 -8.68 16 17 H 0.44 7.35 8.96 -182.56 -1.64 5.72 16 18 N -0.34 -6.78 3.63 -58.04 -0.21 -6.99 16 19 C 0.26 5.47 5.71 -5.19 -0.03 5.44 16 20 C -0.56 -13.31 9.39 -34.44 -0.32 -13.64 16 21 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 22 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -22.55 13.29 55.43 0.74 -21.82 16 24 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.42 7.80 -51.93 -0.40 1.02 16 31 H 0.18 3.87 5.77 -52.48 -0.30 3.57 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.62 8.01 -51.93 -0.42 0.21 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 1.43 9.12 45.56 0.42 1.85 16 39 H 0.09 1.52 8.04 -51.93 -0.42 1.10 16 40 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.43 7.88 -51.93 -0.41 1.03 16 43 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -33.10 367.27 -9.45 -42.56 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.51 Total: 9.49 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: -3.10 Total: 14.96 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 0.01 Total: -63.82 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.40 Total: -20.25 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.10 -9.45 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619795900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.450 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds