Wall clock time and date at job start Fri Apr 10 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34963 * 125.52446 * 2 1 4 4 C 1.41208 * 108.24334 * 180.13604 * 3 2 1 5 5 N 1.32933 * 126.37754 * 179.88698 * 4 3 2 6 6 C 1.33823 * 120.00006 * 359.68677 * 5 4 3 7 7 O 1.21834 * 120.00325 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99991 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64478 * 359.96691 * 8 6 5 10 10 C 1.54331 * 107.26934 * 181.09286 * 9 8 6 11 11 C 1.55155 * 102.94346 * 22.18715 * 10 9 8 12 12 F 1.39908 * 111.03760 * 82.58748 * 11 10 9 13 13 C 1.52997 * 111.00696 * 206.42653 * 11 10 9 14 14 O 1.42898 * 109.47319 * 173.65300 * 13 11 10 15 15 C 1.47421 * 125.64877 * 180.02562 * 8 6 5 16 16 N 1.37427 * 107.24019 * 359.62258 * 4 3 2 17 17 H 0.96996 * 126.36386 * 180.22086 * 16 4 3 18 18 N 1.36449 * 125.52865 * 179.71396 * 2 1 3 19 19 C 1.46500 * 125.84897 * 0.02562 * 18 2 1 20 20 C 1.50700 * 109.47312 * 85.02379 * 19 18 2 21 21 H 1.08001 * 119.99782 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00073 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00102 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99645 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47303 * 59.99564 * 24 22 20 26 26 H 1.48507 * 109.46476 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47027 * 299.99197 * 24 22 20 28 28 H 1.08996 * 109.47669 * 270.28155 * 1 2 3 29 29 H 1.09001 * 109.47012 * 30.28129 * 1 2 3 30 30 H 1.09000 * 109.46984 * 150.27654 * 1 2 3 31 31 H 1.08003 * 125.87799 * 0.02582 * 3 2 1 32 32 H 1.09002 * 109.88212 * 300.50589 * 9 8 6 33 33 H 1.08993 * 109.88714 * 61.67647 * 9 8 6 34 34 H 1.09003 * 110.71714 * 263.82626 * 10 9 8 35 35 H 1.08997 * 110.72303 * 140.55619 * 10 9 8 36 36 H 1.09002 * 109.47153 * 53.64993 * 13 11 10 37 37 H 1.09001 * 109.46832 * 293.65183 * 13 11 10 38 38 H 0.96701 * 113.99881 * 180.02562 * 14 13 11 39 39 H 1.09000 * 110.36770 * 37.00265 * 15 8 6 40 40 H 1.09004 * 110.36992 * 274.67998 * 15 8 6 41 41 H 1.08998 * 109.47031 * 205.01636 * 19 18 2 42 42 H 1.09002 * 109.47578 * 325.02078 * 19 18 2 43 43 H 0.96994 * 119.99745 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6395 0.6789 -0.0032 5 7 4.7103 1.4667 -0.0063 6 6 4.5625 2.7967 -0.0129 7 8 3.4465 3.2857 -0.0156 8 7 5.6481 3.5954 -0.0155 9 6 7.0462 3.1408 -0.0110 10 6 7.9376 4.4005 0.0117 11 6 6.9910 5.4856 0.5897 12 9 6.9515 5.4250 1.9869 13 6 7.4021 6.8810 0.1157 14 8 6.4282 7.8354 0.5430 15 6 5.6303 5.0695 -0.0222 16 7 3.6385 -0.6953 0.0036 17 1 4.4192 -1.2710 0.0064 18 7 2.2999 -1.1104 0.0055 19 6 1.8321 -2.4987 0.0119 20 6 1.5554 -2.9421 -1.4015 21 1 1.7119 -2.2581 -2.2225 22 6 1.1014 -4.2208 -1.6466 23 7 0.9103 -5.0536 -0.6468 24 14 0.7577 -4.7701 -3.3986 25 1 2.0030 -4.6714 -4.2016 26 1 0.2836 -6.1774 -3.3921 27 1 -0.2862 -3.8984 -3.9949 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.9467 2.1220 0.0004 32 1 7.2365 2.5360 0.8757 33 1 7.2498 2.5589 -0.9098 34 1 8.2573 4.6649 -0.9962 35 1 8.7982 4.2523 0.6640 36 1 7.4673 6.8905 -0.9723 37 1 8.3728 7.1375 0.5401 38 1 6.6246 8.7439 0.2765 39 1 4.8092 5.4418 0.5904 40 1 5.5433 5.4433 -1.0424 41 1 2.5984 -3.1383 0.4498 42 1 0.9179 -2.5715 0.6011 43 1 0.5912 -5.9532 -0.8193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619795900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:52 Heat of formation + Delta-G solvation = -45.673751 kcal Electronic energy + Delta-G solvation = -27525.577428 eV Core-core repulsion = 23329.171577 eV Total energy + Delta-G solvation = -4196.405851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.154 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.71652 -42.39798 -40.63030 -38.63295 -37.32934 -35.99804 -34.80760 -33.70062 -32.96160 -32.04217 -30.31966 -28.82976 -28.56338 -26.99473 -24.93704 -24.01876 -22.85431 -21.50076 -21.11175 -20.54868 -18.96887 -18.64795 -18.18552 -17.82777 -17.67877 -17.01788 -16.73690 -16.59383 -16.46060 -15.93688 -15.82425 -15.61316 -14.82398 -14.71283 -14.51953 -14.38460 -14.28714 -14.03951 -13.93641 -13.78351 -13.66695 -13.53743 -13.20530 -13.01236 -12.92414 -12.72336 -12.38680 -12.29427 -12.08069 -11.90430 -11.72198 -11.24384 -11.13061 -10.99730 -10.76924 -10.33716 -9.97666 -9.60768 -8.55069 -8.22553 -6.55582 0.23793 0.54026 1.39681 1.42030 1.49203 1.57656 2.02113 2.31129 2.82089 2.91054 2.97839 3.04449 3.29965 3.34582 3.58588 3.68356 4.02606 4.15345 4.17029 4.23239 4.30957 4.40415 4.45400 4.57610 4.66985 4.75340 4.76782 4.80426 4.83247 4.88463 4.95277 4.95994 5.09229 5.17144 5.30170 5.51121 5.58760 5.70605 5.82278 6.13061 6.30926 6.55917 6.79698 6.90692 6.95486 7.17904 8.01256 8.67002 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.002329 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.944835 B =12017.356875 C =12310.062043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.199 3.801 3 C -0.350 4.350 4 C 0.473 3.527 5 N -0.714 5.714 6 C 0.687 3.313 7 O -0.660 6.660 8 N -0.624 5.624 9 C 0.115 3.885 10 C -0.131 4.131 11 C 0.099 3.901 12 F -0.214 7.214 13 C 0.072 3.928 14 O -0.593 6.593 15 C 0.111 3.889 16 N -0.465 5.465 17 H 0.452 0.548 18 N -0.349 5.349 19 C 0.269 3.731 20 C -0.563 4.563 21 H 0.057 0.943 22 C 0.032 3.968 23 N -0.912 5.912 24 Si 0.962 3.038 25 H -0.276 1.276 26 H -0.279 1.279 27 H -0.267 1.267 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.404 0.596 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 17.153 -0.523 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.073 3.927 3 C -0.383 4.383 4 C 0.220 3.780 5 N -0.479 5.479 6 C 0.388 3.612 7 O -0.545 6.545 8 N -0.361 5.361 9 C -0.008 4.008 10 C -0.169 4.169 11 C 0.080 3.920 12 F -0.195 7.195 13 C -0.006 4.006 14 O -0.403 6.403 15 C -0.013 4.013 16 N -0.189 5.189 17 H 0.301 0.699 18 N -0.136 5.136 19 C 0.152 3.848 20 C -0.601 4.601 21 H 0.075 0.925 22 C -0.170 4.170 23 N -0.549 5.549 24 Si 0.787 3.213 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.192 1.192 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.187 0.813 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.256 0.744 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.532 16.001 -0.172 19.724 hybrid contribution -0.229 -0.285 -0.713 0.802 sum 11.303 15.716 -0.885 19.379 Atomic orbital electron populations 1.20812 0.83663 1.05565 1.05373 1.21818 0.96003 0.84455 0.90405 1.22064 0.91432 1.00168 1.24595 1.18882 0.91462 0.82599 0.85038 1.68089 1.28645 1.03611 1.47527 1.16491 0.82185 0.85063 0.77445 1.90703 1.25114 1.79026 1.59674 1.47169 1.05742 1.05644 1.77510 1.21909 0.79466 0.97287 1.02130 1.23305 0.97298 0.91001 1.05257 1.22387 0.96340 0.97773 0.75532 1.92840 1.97357 1.97646 1.31631 1.22635 0.92223 0.84975 1.00757 1.86513 1.50250 1.22028 1.81508 1.22538 0.97544 0.79510 1.01712 1.44319 0.99027 1.04457 1.71088 0.69908 1.47789 0.92990 1.07892 1.64948 1.19710 0.96157 0.70803 0.98167 1.21500 1.47438 0.98685 0.92477 0.92464 1.25583 0.94165 0.95912 1.01371 1.69954 1.44770 1.07402 1.32823 0.85525 0.78769 0.77573 0.79404 1.20179 1.20376 1.19183 0.87385 0.87326 0.89753 0.81317 0.92796 0.90692 0.85061 0.86542 0.88280 0.89576 0.74432 0.92830 0.88920 0.94000 0.91301 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.70 9.92 71.23 0.71 -1.99 16 2 C 0.20 7.35 6.92 41.09 0.28 7.63 16 3 C -0.35 -14.49 9.41 22.25 0.21 -14.28 16 4 C 0.47 20.03 8.07 133.95 1.08 21.11 16 5 N -0.71 -30.81 10.05 -322.56 -3.24 -34.06 16 6 C 0.69 30.38 8.40 179.35 1.51 31.88 16 7 O -0.66 -32.51 13.52 -4.78 -0.06 -32.58 16 8 N -0.62 -21.89 3.33 -830.43 -2.76 -24.65 16 9 C 0.11 2.96 6.82 86.73 0.59 3.55 16 10 C -0.13 -2.01 6.23 31.78 0.20 -1.81 16 11 C 0.10 2.09 1.38 -9.41 -0.01 2.08 16 12 F -0.21 -6.19 17.01 44.97 0.77 -5.43 16 13 C 0.07 0.90 6.32 71.98 0.46 1.35 16 14 O -0.59 -9.70 13.39 -148.98 -1.99 -11.69 16 15 C 0.11 3.23 5.94 86.85 0.52 3.75 16 16 N -0.47 -17.80 7.38 -54.78 -0.40 -18.20 16 17 H 0.45 15.16 8.96 -213.29 -1.91 13.24 16 18 N -0.35 -13.71 3.63 -337.54 -1.23 -14.94 16 19 C 0.27 11.44 5.71 85.63 0.49 11.93 16 20 C -0.56 -26.72 9.39 25.60 0.24 -26.48 16 21 H 0.06 2.82 7.81 -2.91 -0.02 2.79 16 22 C 0.03 1.55 5.46 84.66 0.46 2.01 16 23 N -0.91 -45.91 13.29 21.45 0.28 -45.63 16 24 Si 0.96 38.91 29.54 68.60 2.03 40.94 16 25 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 28 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.08 2.53 7.80 -2.39 -0.02 2.51 16 31 H 0.17 7.50 5.77 -2.91 -0.02 7.48 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.13 1.09 8.01 -2.39 -0.02 1.07 16 35 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.10 0.63 8.11 -2.39 -0.02 0.61 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.40 2.13 9.12 -74.06 -0.68 1.45 16 39 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 40 H 0.09 2.32 8.04 -2.39 -0.02 2.30 16 41 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.93 7.88 -2.39 -0.02 2.91 16 43 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -73.83 367.27 -1.42 -75.25 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -1.53 Total: 30.25 kcal Atomic # 6 Polarization: 34.00 SS G_CDS: 6.73 Total: 40.73 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -7.35 Total: -137.47 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -2.06 Total: -44.27 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.77 Total: -5.43 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -73.83 -1.42 -75.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619795900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.576 kcal (2) G-P(sol) polarization free energy of solvation -73.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds