Wall clock time and date at job start Fri Apr 10 2020 18:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35272 * 126.71254 * 2 1 4 4 C 1.41925 * 103.96469 * 180.10792 * 3 2 1 5 5 O 1.35704 * 126.88098 * 179.90997 * 4 3 2 6 6 C 1.42899 * 117.00088 * 179.71010 * 5 4 3 7 7 C 1.50696 * 109.47473 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00432 * 180.27701 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08993 * 109.47491 * 330.00073 * 10 9 7 12 12 C 1.52996 * 109.46934 * 90.00375 * 10 9 7 13 13 C 1.50704 * 109.46907 * 209.99697 * 10 9 7 14 14 O 1.21276 * 120.00460 * 0.02562 * 13 10 9 15 15 N 1.34782 * 119.99734 * 180.02562 * 13 10 9 16 16 C 1.46503 * 119.99939 * 0.02562 * 15 13 10 17 17 C 1.46502 * 119.99909 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.47072 * 90.00093 * 17 15 13 19 19 H 1.07998 * 120.00065 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99831 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00223 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47206 * 59.99422 * 22 20 18 24 24 H 1.48496 * 109.47333 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46996 * 299.99675 * 22 20 18 26 26 N 1.30619 * 106.24010 * 359.65053 * 4 3 2 27 27 O 1.20914 * 111.49939 * 0.22138 * 26 4 3 28 28 H 1.09004 * 109.47356 * 180.25963 * 1 2 3 29 29 H 1.08995 * 109.47140 * 300.26078 * 1 2 3 30 30 H 1.09008 * 109.47060 * 60.26157 * 1 2 3 31 31 H 1.08001 * 128.01657 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47391 * 59.99989 * 6 5 4 33 33 H 1.09006 * 109.47136 * 299.99875 * 6 5 4 34 34 H 1.09004 * 109.47062 * 180.02562 * 12 10 9 35 35 H 1.09005 * 109.47320 * 299.99428 * 12 10 9 36 36 H 1.08999 * 109.47835 * 59.99944 * 12 10 9 37 37 H 1.09000 * 109.46636 * 90.00251 * 16 15 13 38 38 H 1.08998 * 109.46861 * 209.99901 * 16 15 13 39 39 H 1.09001 * 109.47185 * 330.00012 * 16 15 13 40 40 H 1.09000 * 109.46638 * 210.00123 * 17 15 13 41 41 H 1.08994 * 109.47029 * 330.00186 * 17 15 13 42 42 H 0.97004 * 120.00433 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0844 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7953 1.2217 -0.0053 6 6 5.9988 0.4513 -0.0012 7 6 7.1880 1.3769 -0.0043 8 8 7.0219 2.5738 -0.0101 9 8 8.4316 0.8720 -0.0069 10 6 9.5290 1.8227 -0.0162 11 1 9.2189 2.7306 -0.5333 12 6 9.9205 2.1637 1.4229 13 6 10.7115 1.2178 -0.7285 14 8 10.6365 0.0963 -1.1838 15 7 11.8524 1.9234 -0.8594 16 6 11.9431 3.2780 -0.3089 17 6 13.0016 1.3357 -1.5523 18 6 12.9256 1.6660 -3.0206 19 1 12.1032 2.2544 -3.3999 20 6 13.9054 1.2160 -3.8800 21 7 14.9065 0.4991 -3.4183 22 14 13.8115 1.6260 -5.7001 23 1 13.8285 3.1003 -5.8770 24 1 14.9764 1.0302 -6.4024 25 1 12.5553 1.0738 -6.2677 26 7 3.4765 -0.7622 0.0038 27 8 2.3085 -1.0749 0.0054 28 1 -0.3634 -1.0277 0.0047 29 1 -0.3633 0.5179 0.8876 30 1 -0.3633 0.5098 -0.8924 31 1 2.0312 2.1263 -0.0004 32 1 6.0282 -0.1816 -0.8881 33 1 6.0274 -0.1732 0.8918 34 1 10.7441 2.8778 1.4160 35 1 9.0653 2.6012 1.9382 36 1 10.2307 1.2558 1.9401 37 1 12.3057 3.2293 0.7179 38 1 12.6337 3.8691 -0.9104 39 1 10.9576 3.7434 -0.3245 40 1 13.9234 1.7418 -1.1357 41 1 12.9899 0.2536 -1.4221 42 1 15.5961 0.1828 -4.0228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728924900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:04 Heat of formation + Delta-G solvation = -73.847163 kcal Electronic energy + Delta-G solvation = -27050.222464 eV Core-core repulsion = 22807.929382 eV Total energy + Delta-G solvation = -4242.293082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.27276 -40.92949 -39.45637 -38.73391 -36.47429 -35.00544 -34.25593 -33.03140 -32.89726 -31.72844 -29.37099 -28.20757 -27.67367 -26.28633 -24.48336 -23.79964 -22.99697 -21.84163 -20.81494 -18.96847 -18.60297 -18.24174 -17.61201 -17.30629 -16.88596 -16.60799 -16.54269 -15.89458 -15.46972 -15.36667 -14.62077 -14.52103 -14.30963 -14.09823 -13.77124 -13.72150 -13.62786 -13.15468 -12.94308 -12.86837 -12.47896 -12.30469 -12.18363 -12.06927 -11.69656 -11.50325 -11.44119 -11.18372 -10.96274 -10.80938 -10.66988 -10.58930 -10.19634 -9.92518 -9.70027 -9.59699 -8.97862 -8.46862 -7.77776 -6.08137 -4.13374 1.02272 1.59106 1.87411 1.94733 2.65296 2.93482 3.19768 3.30643 3.34931 3.39001 3.75777 3.80090 4.34622 4.40461 4.44333 4.52984 4.64259 4.73739 4.76803 4.80373 4.88318 4.91230 5.02746 5.11980 5.24769 5.26406 5.43541 5.50258 5.58633 5.59743 5.79240 5.93480 6.18006 6.23650 6.51316 6.93646 7.35088 7.41251 7.52285 7.86316 7.87384 8.16949 8.23613 8.79743 8.94809 9.51724 10.99909 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018829 B = 0.002216 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.737961 B =12631.547544 C =13443.726834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.008 4.008 3 C -0.232 4.232 4 C 0.214 3.786 5 O -0.261 6.261 6 C 0.074 3.926 7 C 0.467 3.533 8 O -0.488 6.488 9 O -0.319 6.319 10 C 0.072 3.928 11 H 0.109 0.891 12 C -0.176 4.176 13 C 0.509 3.491 14 O -0.519 6.519 15 N -0.594 5.594 16 C 0.075 3.925 17 C 0.247 3.753 18 C -0.531 4.531 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 N -0.407 5.407 27 O 0.102 5.898 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.682 2.984 11.517 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.253 4.253 4 C 0.017 3.983 5 O -0.167 6.167 6 C -0.002 4.002 7 C 0.308 3.692 8 O -0.375 6.375 9 O -0.234 6.234 10 C 0.014 3.986 11 H 0.126 0.874 12 C -0.234 4.234 13 C 0.293 3.707 14 O -0.394 6.394 15 N -0.328 5.328 16 C -0.069 4.069 17 C 0.128 3.872 18 C -0.569 4.569 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 N -0.134 5.134 27 O 0.041 5.959 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.197 0.803 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.598 1.937 11.211 27.102 hybrid contribution -0.051 1.116 -1.065 1.543 sum -24.650 3.052 10.146 26.830 Atomic orbital electron populations 1.20402 0.83381 1.05055 1.04473 1.24377 0.96550 0.85498 1.00716 1.21781 0.88068 1.01827 1.13656 1.21941 0.87924 0.88086 1.00390 1.86182 1.10057 1.31016 1.89435 1.21855 0.79846 0.91707 1.06801 1.22745 0.84743 0.88239 0.73495 1.90701 1.86194 1.16387 1.44204 1.86551 1.13554 1.40236 1.83069 1.22715 0.84742 0.92212 0.98954 0.87353 1.22423 1.03550 1.03732 0.93656 1.19713 0.83453 0.86559 0.80991 1.90714 1.81775 1.18772 1.48136 1.48062 1.14125 1.14945 1.55661 1.21902 1.02012 0.84603 0.98376 1.19365 0.81134 0.95418 0.91241 1.21379 1.08784 1.34149 0.92631 0.92465 1.24931 0.95172 0.94838 0.99094 1.69916 1.11934 1.35734 1.35635 0.86537 0.77629 0.78536 0.84607 1.20205 1.21104 1.20155 1.74210 0.98006 1.14060 1.27088 1.84817 1.10232 1.31993 1.68870 0.89507 0.88797 0.88777 0.80265 0.86740 0.86971 0.88611 0.91270 0.90822 0.92932 0.90212 0.92272 0.94512 0.93594 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 10.45 36.01 0.38 0.21 16 2 C -0.01 -0.05 7.48 -35.37 -0.26 -0.32 16 3 C -0.23 -1.95 11.10 -39.23 -0.44 -2.39 16 4 C 0.21 2.50 8.01 -16.66 -0.13 2.36 16 5 O -0.26 -3.43 9.74 -38.77 -0.38 -3.81 16 6 C 0.07 0.91 6.25 36.00 0.23 1.13 16 7 C 0.47 7.04 8.01 36.00 0.29 7.32 16 8 O -0.49 -8.28 15.72 -25.48 -0.40 -8.68 16 9 O -0.32 -5.37 9.41 -45.88 -0.43 -5.81 16 10 C 0.07 1.20 2.18 -27.88 -0.06 1.14 16 11 H 0.11 1.75 6.42 -51.93 -0.33 1.41 16 12 C -0.18 -2.27 9.18 37.16 0.34 -1.93 16 13 C 0.51 10.91 7.16 -10.98 -0.08 10.83 16 14 O -0.52 -13.51 16.08 -14.10 -0.23 -13.73 16 15 N -0.59 -12.53 2.86 -182.95 -0.52 -13.05 16 16 C 0.07 1.15 8.80 59.85 0.53 1.67 16 17 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 18 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 N -0.41 -4.81 11.54 30.38 0.35 -4.46 16 27 O 0.10 0.99 11.19 17.05 0.19 1.18 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.09 0.10 8.14 -51.92 -0.42 -0.32 16 31 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.08 4.53 -51.93 -0.24 0.84 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 38 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.06 0.77 6.00 -51.93 -0.31 0.45 16 40 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -36.79 367.94 -5.21 -42.01 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -5.39 Total: -3.15 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 0.34 Total: 12.72 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.56 Total: -43.22 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.25 Total: -30.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.79 -5.21 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728924900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.842 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds