Wall clock time and date at job start Fri Apr 10 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35272 * 126.71254 * 2 1 4 4 C 1.41925 * 103.96469 * 180.10792 * 3 2 1 5 5 O 1.35704 * 126.88098 * 179.90997 * 4 3 2 6 6 C 1.42899 * 117.00088 * 179.71010 * 5 4 3 7 7 C 1.50696 * 109.47473 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00432 * 180.27701 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08993 * 109.47491 * 330.00073 * 10 9 7 12 12 C 1.52996 * 109.46934 * 90.00375 * 10 9 7 13 13 C 1.50704 * 109.46907 * 209.99697 * 10 9 7 14 14 O 1.21276 * 120.00460 * 0.02562 * 13 10 9 15 15 N 1.34782 * 119.99734 * 180.02562 * 13 10 9 16 16 C 1.46503 * 119.99939 * 0.02562 * 15 13 10 17 17 C 1.46502 * 119.99909 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.47072 * 90.00093 * 17 15 13 19 19 H 1.07998 * 120.00065 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99831 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00223 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47206 * 59.99422 * 22 20 18 24 24 H 1.48496 * 109.47333 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46996 * 299.99675 * 22 20 18 26 26 N 1.30619 * 106.24010 * 359.65053 * 4 3 2 27 27 O 1.20914 * 111.49939 * 0.22138 * 26 4 3 28 28 H 1.09004 * 109.47356 * 180.25963 * 1 2 3 29 29 H 1.08995 * 109.47140 * 300.26078 * 1 2 3 30 30 H 1.09008 * 109.47060 * 60.26157 * 1 2 3 31 31 H 1.08001 * 128.01657 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47391 * 59.99989 * 6 5 4 33 33 H 1.09006 * 109.47136 * 299.99875 * 6 5 4 34 34 H 1.09004 * 109.47062 * 180.02562 * 12 10 9 35 35 H 1.09005 * 109.47320 * 299.99428 * 12 10 9 36 36 H 1.08999 * 109.47835 * 59.99944 * 12 10 9 37 37 H 1.09000 * 109.46636 * 90.00251 * 16 15 13 38 38 H 1.08998 * 109.46861 * 209.99901 * 16 15 13 39 39 H 1.09001 * 109.47185 * 330.00012 * 16 15 13 40 40 H 1.09000 * 109.46638 * 210.00123 * 17 15 13 41 41 H 1.08994 * 109.47029 * 330.00186 * 17 15 13 42 42 H 0.97004 * 120.00433 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0844 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7953 1.2217 -0.0053 6 6 5.9988 0.4513 -0.0012 7 6 7.1880 1.3769 -0.0043 8 8 7.0219 2.5738 -0.0101 9 8 8.4316 0.8720 -0.0069 10 6 9.5290 1.8227 -0.0162 11 1 9.2189 2.7306 -0.5333 12 6 9.9205 2.1637 1.4229 13 6 10.7115 1.2178 -0.7285 14 8 10.6365 0.0963 -1.1838 15 7 11.8524 1.9234 -0.8594 16 6 11.9431 3.2780 -0.3089 17 6 13.0016 1.3357 -1.5523 18 6 12.9256 1.6660 -3.0206 19 1 12.1032 2.2544 -3.3999 20 6 13.9054 1.2160 -3.8800 21 7 14.9065 0.4991 -3.4183 22 14 13.8115 1.6260 -5.7001 23 1 13.8285 3.1003 -5.8770 24 1 14.9764 1.0302 -6.4024 25 1 12.5553 1.0738 -6.2677 26 7 3.4765 -0.7622 0.0038 27 8 2.3085 -1.0749 0.0054 28 1 -0.3634 -1.0277 0.0047 29 1 -0.3633 0.5179 0.8876 30 1 -0.3633 0.5098 -0.8924 31 1 2.0312 2.1263 -0.0004 32 1 6.0282 -0.1816 -0.8881 33 1 6.0274 -0.1732 0.8918 34 1 10.7441 2.8778 1.4160 35 1 9.0653 2.6012 1.9382 36 1 10.2307 1.2558 1.9401 37 1 12.3057 3.2293 0.7179 38 1 12.6337 3.8691 -0.9104 39 1 10.9576 3.7434 -0.3245 40 1 13.9234 1.7418 -1.1357 41 1 12.9899 0.2536 -1.4221 42 1 15.5961 0.1828 -4.0228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728924900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:03 Heat of formation + Delta-G solvation = -99.408745 kcal Electronic energy + Delta-G solvation = -27051.330897 eV Core-core repulsion = 22807.929382 eV Total energy + Delta-G solvation = -4243.401515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.00641 -42.19922 -40.81577 -39.95410 -37.78580 -36.78152 -34.97282 -34.81926 -33.68800 -33.17735 -30.42584 -29.52386 -28.63125 -27.76936 -26.02342 -24.63277 -24.53246 -22.95949 -21.86490 -20.55019 -19.60850 -19.02018 -18.74739 -18.50482 -18.43022 -17.96562 -17.72348 -17.40239 -16.95164 -16.60583 -16.38457 -15.90125 -15.26751 -14.93708 -14.88564 -14.64931 -14.36837 -14.24353 -14.04920 -13.92321 -13.79062 -13.58445 -13.38101 -13.24945 -13.16009 -12.98121 -12.84561 -12.64833 -12.47239 -12.22990 -12.19288 -12.07380 -11.87620 -11.75857 -10.69931 -10.67134 -10.56865 -10.33897 -9.56197 -8.26120 -6.40743 0.41149 0.51740 0.75113 1.14611 1.34637 1.38717 1.45593 1.55459 1.77145 2.18667 2.32627 2.41172 3.00898 3.03798 3.24461 3.33484 3.67024 3.70700 3.74823 3.78512 3.87749 3.95991 4.28330 4.36029 4.46703 4.56921 4.63712 4.76629 4.80355 4.82637 4.89487 4.90853 5.04853 5.07128 5.18250 5.27671 5.47405 5.65547 5.74490 6.00473 6.28804 6.54663 6.67315 7.15106 7.17215 7.32131 8.80913 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018829 B = 0.002216 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.737961 B =12631.547544 C =13443.726834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 C -0.245 4.245 4 C 0.190 3.810 5 O -0.277 6.277 6 C 0.079 3.921 7 C 0.472 3.528 8 O -0.507 6.507 9 O -0.335 6.335 10 C 0.080 3.920 11 H 0.118 0.882 12 C -0.168 4.168 13 C 0.500 3.500 14 O -0.579 6.579 15 N -0.597 5.597 16 C 0.066 3.934 17 C 0.260 3.740 18 C -0.548 4.548 19 H 0.052 0.948 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.966 3.034 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.280 1.280 26 N -0.433 5.433 27 O 0.094 5.906 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.200 0.800 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.002 0.998 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.871 4.667 11.931 30.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.266 4.266 4 C -0.007 4.007 5 O -0.184 6.184 6 C 0.003 3.997 7 C 0.314 3.686 8 O -0.395 6.395 9 O -0.250 6.250 10 C 0.022 3.978 11 H 0.136 0.864 12 C -0.225 4.225 13 C 0.286 3.714 14 O -0.458 6.458 15 N -0.329 5.329 16 C -0.075 4.075 17 C 0.139 3.861 18 C -0.587 4.587 19 H 0.070 0.930 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.790 3.210 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.206 1.206 26 N -0.160 5.160 27 O 0.033 5.967 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.217 0.783 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.801 3.667 11.659 29.456 hybrid contribution 0.534 0.571 -1.159 1.398 sum -26.268 4.238 10.500 28.604 Atomic orbital electron populations 1.20697 0.79796 1.06453 1.06237 1.25200 0.98132 0.84044 0.97935 1.22158 0.86804 1.03314 1.14371 1.22371 0.88217 0.88629 1.01502 1.86130 1.10579 1.31745 1.89907 1.21875 0.78878 0.90963 1.07948 1.23172 0.84578 0.88377 0.72478 1.90679 1.86272 1.17265 1.45274 1.86550 1.14322 1.40861 1.83311 1.22647 0.82889 0.91453 1.00797 0.86402 1.22443 1.05021 1.04267 0.90760 1.20581 0.84559 0.85907 0.80323 1.90674 1.83003 1.21467 1.50697 1.48032 1.12869 1.16981 1.55034 1.22274 1.04006 0.81407 0.99844 1.18865 0.83030 0.93134 0.91068 1.21656 1.08706 1.34295 0.94035 0.93001 1.25830 0.94761 0.94558 1.03839 1.70026 1.12574 1.36445 1.37325 0.85491 0.77478 0.79180 0.78805 1.18408 1.20118 1.20616 1.74194 0.99242 1.14411 1.28136 1.84769 1.09997 1.33062 1.68845 0.88338 0.86730 0.86956 0.78268 0.86271 0.85031 0.86596 0.89326 0.91004 0.89399 0.90567 0.89314 0.94646 0.98023 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 10.45 71.24 0.74 0.64 16 2 C 0.01 0.12 7.48 25.00 0.19 0.31 16 3 C -0.24 -3.81 11.10 22.50 0.25 -3.56 16 4 C 0.19 4.36 8.01 85.79 0.69 5.05 16 5 O -0.28 -7.24 9.74 -71.17 -0.69 -7.93 16 6 C 0.08 1.94 6.25 71.23 0.45 2.38 16 7 C 0.47 14.04 8.01 71.23 0.57 14.61 16 8 O -0.51 -16.76 15.72 28.37 0.45 -16.32 16 9 O -0.33 -11.27 9.41 -44.98 -0.42 -11.69 16 10 C 0.08 2.60 2.18 29.85 0.07 2.67 16 11 H 0.12 3.62 6.42 -2.39 -0.02 3.60 16 12 C -0.17 -3.93 9.18 71.98 0.66 -3.27 16 13 C 0.50 21.79 7.16 87.66 0.63 22.42 16 14 O -0.58 -31.56 16.08 15.78 0.25 -31.31 16 15 N -0.60 -25.30 2.86 -851.12 -2.43 -27.74 16 16 C 0.07 1.89 8.80 127.77 1.12 3.02 16 17 C 0.26 13.95 5.16 85.63 0.44 14.39 16 18 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16 19 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 20 C 0.01 0.56 5.46 84.65 0.46 1.02 16 21 N -0.92 -55.74 13.29 21.44 0.28 -55.46 16 22 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 26 N -0.43 -10.17 11.54 -172.60 -1.99 -12.16 16 27 O 0.09 1.74 11.19 71.19 0.80 2.54 16 28 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 29 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.13 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.12 2.20 4.53 -2.38 -0.01 2.19 16 35 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.93 6.95 -2.39 -0.02 1.91 16 38 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 39 H 0.09 2.03 6.00 -2.39 -0.01 2.02 16 40 H 0.04 1.88 8.07 -2.39 -0.02 1.87 16 41 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 42 H 0.27 15.20 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -83.69 367.94 5.83 -77.86 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.05 Total: 6.79 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: 6.51 Total: 28.15 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.14 Total: -95.35 kcal Atomic # 8 Polarization: -65.09 SS G_CDS: 0.38 Total: -64.71 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -83.69 5.83 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728924900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.547 kcal (2) G-P(sol) polarization free energy of solvation -83.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds