Wall clock time and date at job start Fri Apr 10 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47441 * 2 1 4 4 O 1.45201 * 109.47476 * 239.99535 * 2 1 3 5 5 C 1.34222 * 116.99867 * 90.00185 * 4 2 1 6 6 O 1.20830 * 120.00323 * 359.72425 * 5 4 2 7 7 C 1.50706 * 120.00024 * 180.02562 * 5 4 2 8 8 N 1.46493 * 109.47128 * 179.72247 * 7 5 4 9 9 N 1.40171 * 126.35274 * 269.68176 * 8 7 5 10 10 C 1.29400 * 108.14186 * 179.88157 * 9 8 7 11 11 N 1.37362 * 108.82974 * 0.38600 * 10 9 8 12 12 C 1.46497 * 125.83428 * 179.76954 * 11 10 9 13 13 C 1.34815 * 108.33330 * 359.75478 * 11 10 9 14 14 O 1.21815 * 126.29954 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47046 * 119.99364 * 2 1 3 16 16 O 1.21281 * 119.99903 * 119.99993 * 15 2 1 17 17 N 1.34780 * 119.99711 * 300.00420 * 15 2 1 18 18 C 1.46499 * 120.00196 * 359.97438 * 17 15 2 19 19 C 1.46496 * 119.99512 * 179.97438 * 17 15 2 20 20 C 1.50697 * 109.47551 * 89.99785 * 19 17 15 21 21 H 1.08004 * 119.99914 * 0.02562 * 20 19 17 22 22 C 1.37878 * 120.00209 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99957 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47508 * 90.00236 * 24 22 20 26 26 H 1.48502 * 109.47256 * 210.00413 * 24 22 20 27 27 H 1.48499 * 109.47341 * 330.00040 * 24 22 20 28 28 H 1.09002 * 109.47441 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47501 * 300.00683 * 1 2 3 30 30 H 1.09007 * 109.47007 * 60.00760 * 1 2 3 31 31 H 1.09001 * 109.46564 * 299.72723 * 7 5 4 32 32 H 1.08998 * 109.47012 * 59.71777 * 7 5 4 33 33 H 1.07996 * 125.58256 * 180.14553 * 10 9 8 34 34 H 1.09004 * 109.47326 * 269.98511 * 12 11 10 35 35 H 1.09006 * 109.46899 * 29.97903 * 12 11 10 36 36 H 1.09003 * 109.47288 * 149.97770 * 12 11 10 37 37 H 1.09005 * 109.46753 * 89.99885 * 18 17 15 38 38 H 1.09001 * 109.46833 * 210.00013 * 18 17 15 39 39 H 1.09004 * 109.47074 * 330.00231 * 18 17 15 40 40 H 1.09007 * 109.46640 * 209.99997 * 19 17 15 41 41 H 1.09006 * 109.47382 * 329.99222 * 19 17 15 42 42 H 0.96996 * 119.99949 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0638 -2.2810 6 8 1.9931 1.2508 -2.2520 7 6 2.7184 -0.5775 -3.5494 8 7 2.8507 0.4422 -4.5928 9 7 1.8634 0.8235 -5.5119 10 6 2.3542 1.7514 -6.2686 11 7 3.6503 1.9965 -5.8856 12 6 4.5549 2.9738 -6.4962 13 6 3.9477 1.1843 -4.8514 14 8 5.0111 1.1301 -4.2597 15 6 2.0323 -0.7103 1.2306 16 8 2.7295 -1.6964 1.1194 17 7 1.7066 -0.2497 2.4547 18 6 0.8647 0.9417 2.5889 19 6 2.1944 -0.9405 3.6508 20 6 3.5221 -0.3576 4.0613 21 1 3.9587 0.4473 3.4886 22 6 4.1790 -0.8512 5.1685 23 7 3.6472 -1.8310 5.8662 24 14 5.8244 -0.1281 5.6777 25 1 5.6002 0.9971 6.6205 26 1 6.6410 -1.1754 6.3421 27 1 6.5401 0.3689 4.4752 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 3.6895 -1.0369 -3.3649 32 1 2.0114 -1.3406 -3.8746 33 1 1.8316 2.2486 -7.0723 34 1 5.1095 2.4993 -7.3058 35 1 3.9750 3.8072 -6.8929 36 1 5.2530 3.3421 -5.7445 37 1 -0.1834 0.6441 2.6220 38 1 1.1225 1.4670 3.5085 39 1 1.0286 1.6004 1.7360 40 1 1.4762 -0.8149 4.4612 41 1 2.3151 -2.0019 3.4337 42 1 4.1095 -2.1784 6.6449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781267658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:35 Heat of formation + Delta-G solvation = -49.339103 kcal Electronic energy + Delta-G solvation = -27841.962427 eV Core-core repulsion = 23633.024845 eV Total energy + Delta-G solvation = -4208.937582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.74624 -40.68878 -38.97751 -37.53379 -36.61221 -35.53188 -34.95241 -32.95945 -32.36423 -31.48572 -28.89189 -27.69315 -27.28888 -26.23335 -24.47455 -23.40073 -22.56762 -21.75574 -20.80961 -18.93073 -18.26258 -17.98114 -17.00967 -16.70078 -16.52260 -16.46197 -16.12674 -15.78402 -15.66878 -15.24219 -14.88153 -14.60635 -14.21605 -13.87804 -13.69797 -13.22104 -13.17804 -13.01861 -12.81382 -12.63407 -12.40820 -12.22592 -12.18437 -12.07950 -11.64065 -11.39017 -11.15281 -11.02612 -10.90992 -10.72661 -10.58069 -10.56761 -10.30849 -10.16154 -9.64698 -8.96484 -8.88256 -8.44259 -7.73317 -6.05399 -4.10253 1.23125 1.59978 2.05608 2.24618 2.57419 2.84201 3.25621 3.31296 3.38058 3.44212 3.84946 4.03829 4.35198 4.44482 4.54304 4.58090 4.79808 4.82720 4.87305 4.97792 5.00772 5.08989 5.10062 5.29347 5.44236 5.49203 5.62559 5.65455 5.69961 5.83026 5.98277 6.14202 6.21339 6.35477 6.97592 7.24303 7.38698 7.45831 7.60266 7.73800 7.90743 8.20408 8.28290 8.84429 8.99304 9.54928 11.02763 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.002731 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.933503 B =10249.780092 C =11195.055926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.321 6.321 5 C 0.445 3.555 6 O -0.499 6.499 7 C 0.174 3.826 8 N -0.443 5.443 9 N -0.275 5.275 10 C 0.260 3.740 11 N -0.562 5.562 12 C 0.099 3.901 13 C 0.652 3.348 14 O -0.543 6.543 15 C 0.509 3.491 16 O -0.518 6.518 17 N -0.595 5.595 18 C 0.076 3.924 19 C 0.247 3.753 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.233 0.767 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 9.117 -26.333 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.236 6.236 5 C 0.285 3.715 6 O -0.386 6.386 7 C 0.051 3.949 8 N -0.265 5.265 9 N -0.096 5.096 10 C -0.039 4.039 11 N -0.291 5.291 12 C -0.043 4.043 13 C 0.352 3.648 14 O -0.415 6.415 15 C 0.293 3.707 16 O -0.394 6.394 17 N -0.329 5.329 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.132 8.154 -25.458 27.667 hybrid contribution 1.373 1.195 0.260 1.839 sum -5.759 9.350 -25.198 27.486 Atomic orbital electron populations 1.22396 0.92283 1.04169 1.04315 1.22647 0.95732 0.97661 0.82639 0.87709 1.86575 1.76469 1.41180 1.19351 1.24003 0.74968 0.86438 0.86041 1.90668 1.47389 1.16488 1.84053 1.20723 1.06630 0.87236 0.80335 1.48255 1.10438 1.37590 1.30167 1.77003 1.14194 1.15456 1.02906 1.25950 0.83443 0.95172 0.99339 1.45866 1.13831 1.37313 1.32102 1.21849 0.93279 0.90167 0.98982 1.16683 0.85015 0.81211 0.81913 1.91139 1.24076 1.70960 1.55361 1.19742 0.81727 0.85411 0.83796 1.90708 1.36837 1.25987 1.85846 1.48058 1.49871 1.28337 1.06653 1.21888 0.93958 0.88039 1.02925 1.19359 0.94377 0.93761 0.79671 1.21430 1.04861 1.19208 1.11299 0.92424 1.24927 0.97991 0.94905 0.96206 1.69926 1.39088 1.25975 1.18322 0.86482 0.83565 0.78687 0.78638 1.20609 1.21011 1.19834 0.90862 0.88826 0.91389 0.84011 0.84060 0.75093 0.90732 0.89211 0.89298 0.92971 0.90286 0.92352 0.94567 0.93591 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.18 37.15 0.34 -1.98 16 2 C 0.07 1.24 2.18 -27.88 -0.06 1.18 16 3 H 0.11 1.80 6.42 -51.93 -0.33 1.47 16 4 O -0.32 -5.49 9.42 -45.88 -0.43 -5.92 16 5 C 0.45 6.82 8.00 36.01 0.29 7.11 16 6 O -0.50 -8.76 15.65 -18.75 -0.29 -9.05 16 7 C 0.17 2.01 6.98 -5.19 -0.04 1.97 16 8 N -0.44 -5.50 3.11 -66.31 -0.21 -5.71 16 9 N -0.27 -2.76 12.53 29.87 0.37 -2.38 16 10 C 0.26 1.66 12.66 -89.12 -1.13 0.53 16 11 N -0.56 -4.84 3.14 -130.10 -0.41 -5.25 16 12 C 0.10 0.45 11.05 59.85 0.66 1.11 16 13 C 0.65 8.82 8.60 -86.73 -0.75 8.07 16 14 O -0.54 -9.41 17.71 5.09 0.09 -9.32 16 15 C 0.51 11.18 7.15 -10.98 -0.08 11.10 16 16 O -0.52 -13.70 16.08 -14.10 -0.23 -13.93 16 17 N -0.60 -12.86 2.86 -182.95 -0.52 -13.38 16 18 C 0.08 1.20 8.80 59.85 0.53 1.73 16 19 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 20 C -0.53 -15.26 9.39 -34.44 -0.32 -15.59 16 21 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 24 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.10 4.53 -51.93 -0.24 0.87 16 30 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.14 1.51 8.11 -51.93 -0.42 1.09 16 32 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.23 0.09 8.06 -52.49 -0.42 -0.33 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.05 0.68 6.95 -51.93 -0.36 0.32 16 38 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 39 H 0.06 0.80 6.01 -51.93 -0.31 0.48 16 40 H 0.04 0.95 8.07 -51.92 -0.42 0.53 16 41 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -41.74 367.81 -6.43 -48.17 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.39 Total: -3.44 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: -0.68 Total: 23.42 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.03 Total: -52.74 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.86 Total: -38.23 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -41.74 -6.43 -48.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781267658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.164 kcal (2) G-P(sol) polarization free energy of solvation -41.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds