Wall clock time and date at job start Fri Apr 10 2020 18:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42891 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46837 * 119.99719 * 2 1 3 5 5 N 1.46494 * 109.47577 * 305.00204 * 4 2 1 6 6 C 1.34009 * 124.22468 * 89.97296 * 5 4 2 7 7 O 1.21541 * 123.81416 * 0.02562 * 6 5 4 8 8 N 1.34980 * 112.36947 * 179.97438 * 6 5 4 9 9 C 1.45939 * 105.99523 * 0.02562 * 8 6 5 10 10 C 1.53571 * 112.01135 * 238.41429 * 9 8 6 11 11 C 1.54499 * 104.08611 * 275.02034 * 10 9 8 12 12 C 1.53977 * 106.66178 * 337.67240 * 11 10 9 13 13 C 1.53571 * 112.01079 * 121.58181 * 9 8 6 14 14 C 1.35208 * 124.22026 * 269.95733 * 5 4 2 15 15 O 1.21235 * 127.46858 * 0.03162 * 14 5 4 16 16 C 1.50702 * 109.47063 * 239.99663 * 2 1 3 17 17 O 1.21203 * 120.00216 * 265.00241 * 16 2 1 18 18 O 1.34310 * 119.99598 * 84.99992 * 16 2 1 19 19 C 1.34922 * 116.99779 * 179.97438 * 18 16 2 20 20 H 1.07996 * 119.99842 * 0.02562 * 19 18 16 21 21 C 1.38759 * 119.99816 * 180.02562 * 19 18 16 22 22 N 1.31446 * 119.99516 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00149 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46775 * 89.99837 * 23 21 19 25 25 H 1.48496 * 109.47057 * 209.99910 * 23 21 19 26 26 H 1.48493 * 109.47108 * 330.00334 * 23 21 19 27 27 H 1.08995 * 109.47628 * 300.00315 * 1 2 3 28 28 H 1.09009 * 109.46851 * 60.00173 * 1 2 3 29 29 H 1.08997 * 109.47400 * 179.97438 * 1 2 3 30 30 H 0.96700 * 114.00078 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46886 * 184.99643 * 4 2 1 32 32 H 1.09000 * 109.46943 * 65.00312 * 4 2 1 33 33 H 0.97002 * 127.00288 * 180.02562 * 8 6 5 34 34 H 1.08999 * 110.50635 * 156.36822 * 10 9 8 35 35 H 1.08999 * 110.50963 * 33.67130 * 10 9 8 36 36 H 1.08999 * 110.02012 * 218.37913 * 11 10 9 37 37 H 1.08993 * 110.02517 * 96.97182 * 11 10 9 38 38 H 1.08997 * 110.01708 * 119.30557 * 12 11 10 39 39 H 1.09001 * 110.01783 * 240.70100 * 12 11 10 40 40 H 1.09000 * 110.51149 * 326.32653 * 13 9 8 41 41 H 1.09003 * 110.50881 * 203.63378 * 13 9 8 42 42 H 0.97000 * 119.99203 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4558 -0.1037 2.4424 6 6 0.2993 -0.4873 3.0002 7 8 -0.3901 -1.3926 2.5732 8 7 -0.0130 0.2448 4.0904 9 6 1.0694 1.2106 4.2497 10 6 1.7580 1.0831 5.6165 11 6 0.8825 1.9378 6.5598 12 6 0.1212 2.9379 5.6703 13 6 0.5585 2.6585 4.2151 14 6 2.0165 0.9243 3.1184 15 8 3.0574 1.4924 2.8663 16 6 2.0324 -0.7105 -1.2304 17 8 2.3206 -1.8865 -1.1760 18 8 2.1606 -0.0405 -2.3874 19 6 2.6160 -0.7354 -3.4504 20 1 2.8585 -1.7827 -3.3472 21 6 2.7728 -0.1044 -4.6763 22 7 3.2160 -0.7817 -5.7120 23 14 2.3540 1.7073 -4.8546 24 1 3.5581 2.5249 -4.5598 25 1 1.9007 1.9762 -6.2429 26 1 1.2705 2.0609 -3.9028 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 2.9703 1.4236 -0.0004 31 1 3.1263 -0.6443 1.2952 32 1 1.7516 -1.7715 1.2056 33 1 -0.7971 0.1485 4.6533 34 1 2.7719 1.4808 5.5718 35 1 1.7687 0.0433 5.9432 36 1 1.5123 2.4742 7.2695 37 1 0.1770 1.3010 7.0934 38 1 -0.9532 2.7856 5.7728 39 1 0.3821 3.9589 5.9490 40 1 -0.2905 2.7478 3.5373 41 1 1.3575 3.3384 3.9193 42 1 3.3259 -0.3405 -6.5688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789108197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:38 Heat of formation + Delta-G solvation = -167.453975 kcal Electronic energy + Delta-G solvation = -29471.515107 eV Core-core repulsion = 25225.162929 eV Total energy + Delta-G solvation = -4246.352178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.90183 -39.76449 -38.87546 -38.24909 -37.01191 -35.71595 -35.40906 -33.84729 -32.34154 -31.12909 -29.41914 -28.82721 -27.30947 -25.94405 -23.88369 -23.20878 -21.33447 -21.01846 -20.68228 -19.65225 -18.26731 -18.04112 -17.71941 -16.99278 -16.69560 -16.30948 -15.71083 -15.47190 -15.32021 -15.04328 -14.98412 -14.90325 -14.26492 -14.22152 -13.94305 -13.81897 -12.95080 -12.70549 -12.40809 -12.25999 -12.21414 -12.14294 -12.12258 -11.79055 -11.72343 -11.69808 -11.50687 -11.23141 -10.98085 -10.95523 -10.90212 -10.51440 -10.32328 -10.25646 -9.81922 -9.72868 -9.64177 -8.97358 -8.71492 -6.41810 -4.17511 1.45362 2.00188 2.81706 2.90626 3.02061 3.24575 3.30814 3.42201 3.61840 3.90170 3.98110 4.02892 4.24259 4.36573 4.54065 4.67323 4.71132 4.81283 4.86241 4.91553 5.05659 5.08144 5.17479 5.28553 5.39431 5.41915 5.49021 5.58957 5.64884 5.69156 5.73491 5.76830 5.80639 5.98481 6.23035 6.34081 6.56594 6.90147 7.24333 7.65112 7.69008 7.96718 7.98820 8.51565 8.95835 9.60667 10.65866 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.003459 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.945955 B = 8093.261031 C = 8548.731680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.141 3.859 3 O -0.539 6.539 4 C 0.105 3.895 5 N -0.569 5.569 6 C 0.702 3.298 7 O -0.532 6.532 8 N -0.714 5.714 9 C 0.112 3.888 10 C -0.118 4.118 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.117 4.117 14 C 0.540 3.460 15 O -0.455 6.455 16 C 0.383 3.617 17 O -0.534 6.534 18 O -0.231 6.231 19 C -0.385 4.385 20 H 0.110 0.890 21 C 0.069 3.931 22 N -0.869 5.869 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.257 1.257 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.384 0.616 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.439 0.561 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 8.550 25.671 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.098 3.902 3 O -0.345 6.345 4 C -0.016 4.016 5 N -0.315 5.315 6 C 0.403 3.597 7 O -0.404 6.404 8 N -0.379 5.379 9 C 0.020 3.980 10 C -0.156 4.156 11 C -0.160 4.160 12 C -0.161 4.161 13 C -0.155 4.155 14 C 0.326 3.674 15 O -0.323 6.323 16 C 0.227 3.773 17 O -0.430 6.430 18 O -0.138 6.138 19 C -0.460 4.460 20 H 0.128 0.872 21 C -0.136 4.136 22 N -0.508 5.508 23 Si 0.729 3.271 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.180 1.180 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.232 0.768 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.283 0.717 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.189 8.169 24.970 26.991 hybrid contribution 0.175 0.452 -0.145 0.506 sum -6.014 8.620 24.825 26.959 Atomic orbital electron populations 1.21732 0.90061 1.03867 1.03108 1.21188 0.97045 0.82608 0.89368 1.86541 1.27565 1.23763 1.96646 1.22215 0.99229 0.99374 0.80798 1.46406 1.22666 1.34161 1.28240 1.16023 0.81013 0.82148 0.80558 1.91046 1.52994 1.30498 1.65861 1.45279 1.25796 1.36112 1.30713 1.21379 0.87747 0.92612 0.96228 1.22492 1.00129 1.01916 0.91096 1.22207 0.98561 0.97416 0.97832 1.22217 1.00366 1.00054 0.93439 1.22483 1.02557 0.92081 0.98429 1.20326 0.85573 0.78610 0.82866 1.90786 1.21279 1.50805 1.69479 1.23337 0.81376 0.86761 0.85795 1.90624 1.49936 1.17046 1.85422 1.83573 1.70130 1.42631 1.17470 1.20717 1.43180 0.96937 0.85188 0.87197 1.24564 0.95329 1.00056 0.93636 1.69613 1.42786 1.37330 1.01066 0.86215 0.80083 0.83060 0.77702 1.19725 1.20750 1.18039 0.92042 0.90626 0.89648 0.76774 0.87806 0.86042 0.71676 0.88939 0.89978 0.90790 0.91261 0.91247 0.90760 0.89809 0.88841 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.60 37.16 0.28 -1.98 16 2 C 0.14 2.59 1.13 -91.77 -0.10 2.48 16 3 O -0.54 -9.44 12.44 -49.09 -0.61 -10.05 16 4 C 0.11 1.66 4.58 -4.05 -0.02 1.64 16 5 N -0.57 -7.62 2.24 -120.93 -0.27 -7.89 16 6 C 0.70 9.02 6.93 -87.42 -0.61 8.41 16 7 O -0.53 -8.50 16.30 5.33 0.09 -8.42 16 8 N -0.71 -6.11 6.03 -53.62 -0.32 -6.43 16 9 C 0.11 0.94 1.04 -132.88 -0.14 0.80 16 10 C -0.12 -0.73 6.02 -25.65 -0.15 -0.89 16 11 C -0.12 -0.53 6.82 -25.44 -0.17 -0.70 16 12 C -0.12 -0.57 6.82 -25.44 -0.17 -0.74 16 13 C -0.12 -0.82 6.03 -25.65 -0.15 -0.98 16 14 C 0.54 6.55 6.73 -10.99 -0.07 6.47 16 15 O -0.46 -6.40 17.79 5.60 0.10 -6.30 16 16 C 0.38 9.04 6.75 36.01 0.24 9.29 16 17 O -0.53 -13.90 15.22 -19.05 -0.29 -14.19 16 18 O -0.23 -6.17 8.33 -25.88 -0.22 -6.38 16 19 C -0.38 -11.48 10.10 30.93 0.31 -11.17 16 20 H 0.11 3.60 7.09 -52.49 -0.37 3.22 16 21 C 0.07 1.98 5.49 -17.52 -0.10 1.89 16 22 N -0.87 -25.79 13.96 55.48 0.77 -25.01 16 23 Si 0.90 21.79 28.62 -169.99 -4.86 16.93 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.06 0.96 6.26 -51.93 -0.32 0.63 16 28 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.08 1.51 7.85 -51.93 -0.41 1.10 16 30 H 0.38 5.92 9.04 45.56 0.41 6.34 16 31 H 0.10 1.54 8.02 -51.93 -0.42 1.12 16 32 H 0.12 2.02 7.41 -51.93 -0.38 1.64 16 33 H 0.44 2.63 8.96 -40.82 -0.37 2.26 16 34 H 0.09 0.61 8.07 -51.93 -0.42 0.20 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.28 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -35.17 354.37 -5.92 -41.10 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.79 Total: 6.78 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: -0.85 Total: 14.53 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.18 Total: -39.33 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.93 Total: -45.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.17 -5.92 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789108197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.359 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds