Wall clock time and date at job start Fri Apr 10 2020 18:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48493 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46946 * 300.00092 * 3 2 1 6 6 H 1.48504 * 109.47243 * 59.99461 * 3 2 1 7 7 C 1.37876 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99599 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00240 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47444 * 180.02562 * 9 7 2 11 11 C 1.46889 * 110.99965 * 169.99879 * 10 9 7 12 12 C 1.53245 * 109.34083 * 187.25304 * 11 10 9 13 13 N 1.47084 * 108.52244 * 306.17825 * 12 11 10 14 14 C 1.34771 * 120.87832 * 231.18436 * 13 12 11 15 15 O 1.21370 * 120.00033 * 8.15127 * 14 13 12 16 16 C 1.49082 * 119.99949 * 187.87212 * 14 13 12 17 17 O 1.20789 * 120.00203 * 8.67294 * 16 14 13 18 18 C 1.50702 * 120.00491 * 188.67120 * 16 14 13 19 19 C 1.52579 * 109.22582 * 275.60295 * 18 16 14 20 20 C 1.53125 * 109.94529 * 168.95820 * 19 18 16 21 21 S 1.81750 * 108.80413 * 63.08382 * 20 19 18 22 22 C 1.81739 * 102.22344 * 306.71276 * 21 20 19 23 23 C 1.52579 * 109.23181 * 154.40206 * 18 16 14 24 24 C 1.47074 * 118.23722 * 51.45231 * 13 12 11 25 25 C 1.46895 * 111.00098 * 294.30613 * 10 9 7 26 26 H 0.97005 * 119.99980 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47118 * 60.00210 * 9 7 2 28 28 H 1.08997 * 109.47221 * 300.00328 * 9 7 2 29 29 H 1.08998 * 109.49419 * 67.30347 * 11 10 9 30 30 H 1.08998 * 109.49886 * 307.21245 * 11 10 9 31 31 H 1.08996 * 109.63426 * 186.46360 * 12 11 10 32 32 H 1.09004 * 109.62563 * 65.88503 * 12 11 10 33 33 H 1.09005 * 109.22053 * 34.99871 * 18 16 14 34 34 H 1.09004 * 109.39025 * 289.14748 * 19 18 16 35 35 H 1.08999 * 109.39326 * 48.85030 * 19 18 16 36 36 H 1.08998 * 109.60759 * 303.27476 * 20 19 18 37 37 H 1.08999 * 109.67884 * 182.93323 * 20 19 18 38 38 H 1.09000 * 109.57372 * 293.45969 * 22 21 20 39 39 H 1.08996 * 109.57685 * 173.07857 * 22 21 20 40 40 H 1.09004 * 109.38969 * 311.15055 * 23 18 16 41 41 H 1.09005 * 109.38994 * 70.84671 * 23 18 16 42 42 H 1.09000 * 109.63111 * 68.25649 * 24 13 12 43 43 H 1.09000 * 109.62794 * 188.84063 * 24 13 12 44 44 H 1.09000 * 109.49079 * 292.70542 * 25 10 9 45 45 H 1.09004 * 109.49586 * 52.78076 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0027 11 6 1.5210 -4.8932 0.2420 12 6 2.5636 -6.0028 0.4158 13 7 3.4615 -5.9869 -0.7490 14 6 3.7118 -7.1136 -1.4449 15 8 3.0840 -8.1250 -1.2084 16 6 4.7555 -7.1159 -2.5094 17 8 5.4832 -6.1612 -2.6439 18 6 4.9029 -8.3094 -3.4178 19 6 5.7810 -9.3544 -2.7359 20 6 5.7205 -10.6736 -3.5110 21 16 6.4035 -10.4078 -5.1741 22 6 5.4311 -8.9918 -5.7676 23 6 5.5233 -7.8624 -4.7382 24 6 4.0837 -4.7100 -1.1306 25 6 2.9767 -3.6502 -1.2471 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 0.8796 -5.1269 -0.6077 30 1 0.9159 -4.8181 1.1454 31 1 2.0631 -6.9690 0.4791 32 1 3.1392 -5.8254 1.3243 33 1 3.9191 -8.7375 -3.6102 34 1 6.8107 -8.9982 -2.7062 35 1 5.4263 -9.5167 -1.7181 36 1 4.6849 -11.0043 -3.5899 37 1 6.3073 -11.4315 -2.9920 38 1 4.3898 -9.2897 -5.8907 39 1 5.8301 -8.6492 -6.7223 40 1 4.9896 -6.9882 -5.1112 41 1 6.5699 -7.6041 -4.5771 42 1 4.8027 -4.4107 -0.3679 43 1 4.5885 -4.8210 -2.0902 44 1 2.3148 -3.9011 -2.0760 45 1 3.4271 -2.6735 -1.4237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866156256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:59 Heat of formation + Delta-G solvation = -52.051693 kcal Electronic energy + Delta-G solvation = -26057.827361 eV Core-core repulsion = 22395.065367 eV Total energy + Delta-G solvation = -3662.761994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23718 -39.10599 -37.71503 -36.81738 -34.46086 -32.46991 -32.00731 -30.90582 -29.13468 -28.38085 -26.11805 -24.48461 -23.52526 -23.38808 -22.07285 -21.19204 -20.16107 -19.13592 -17.48700 -17.03862 -16.99770 -16.41194 -15.99925 -15.65460 -15.02682 -14.83773 -14.57870 -14.51831 -14.32176 -14.12724 -13.94651 -13.75443 -13.55411 -13.31337 -13.20129 -13.00925 -12.86834 -12.26396 -11.98409 -11.91622 -11.57725 -11.44438 -11.33900 -11.13858 -10.96977 -10.87491 -10.80457 -10.67536 -10.57165 -10.14270 -9.95592 -9.33324 -9.19962 -8.68139 -8.50739 -8.07016 -7.40351 -6.10361 -4.12472 0.73194 1.36835 2.12374 2.50688 2.80277 3.26263 3.34136 3.38395 3.71950 4.05321 4.24255 4.32619 4.35738 4.47070 4.67562 4.76244 4.78478 4.96633 5.02252 5.12426 5.21307 5.24603 5.25914 5.31807 5.39519 5.46200 5.48305 5.57113 5.58547 5.69678 5.72461 5.79641 5.90299 6.17299 6.28773 6.39874 6.50185 6.78787 7.14859 7.20959 7.26643 7.69547 7.79968 7.95295 8.06019 8.41903 8.95012 9.52405 11.00493 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.002517 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.287765 B =11121.919444 C =11806.745324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.041 3.959 12 C 0.111 3.889 13 N -0.576 5.576 14 C 0.472 3.528 15 O -0.523 6.523 16 C 0.359 3.641 17 O -0.403 6.403 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.076 4.076 21 S -0.269 6.269 22 C -0.079 4.079 23 C -0.112 4.112 24 C 0.081 3.919 25 C 0.050 3.950 26 H 0.261 0.739 27 H -0.009 1.009 28 H 0.032 0.968 29 H 0.027 0.973 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.024 0.976 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -19.653 -8.008 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.088 4.088 12 C -0.011 4.011 13 N -0.309 5.309 14 C 0.256 3.744 15 O -0.401 6.401 16 C 0.229 3.771 17 O -0.272 6.272 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.224 4.224 21 S -0.043 6.043 22 C -0.227 4.227 23 C -0.151 4.151 24 C -0.041 4.041 25 C -0.079 4.079 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.135 0.865 44 H 0.042 0.958 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.724 -20.019 -8.095 24.571 hybrid contribution -1.405 1.584 0.081 2.119 sum 10.319 -18.435 -8.014 22.596 Atomic orbital electron populations 1.69966 1.06107 1.26802 1.50806 1.25000 0.94874 0.99412 0.95314 0.86434 0.80080 0.83317 0.77559 1.19585 1.21088 1.20968 1.21169 0.93521 0.89819 1.50325 0.91718 1.19738 0.89985 0.87174 0.96253 1.62109 1.28079 1.02663 1.33330 1.22389 0.94777 0.90476 1.01153 1.21957 0.91947 0.99989 0.87159 1.48390 1.44868 1.08665 1.28998 1.20727 0.85350 0.84263 0.84056 1.90726 1.49184 1.32683 1.67544 1.24809 0.81863 0.87687 0.82751 1.90277 1.38379 1.33219 1.65346 1.21512 1.02895 0.95092 0.95122 1.21595 1.00477 0.92735 0.99888 1.23430 1.04731 1.00100 0.94150 1.86961 1.54789 1.43247 1.19348 1.23444 1.02548 0.95108 1.01602 1.21671 1.03414 0.97758 0.92282 1.23000 0.96208 0.81381 1.03498 1.22466 0.94990 0.99297 0.91185 0.92890 0.99084 0.94975 0.95436 0.89776 0.89087 0.90244 0.87295 0.89814 0.89491 0.89202 0.87156 0.89471 0.87180 0.89998 0.89334 0.90237 0.86537 0.95821 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.83 8.41 -34.44 -0.29 -14.12 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 10 N -0.54 -11.05 4.62 -235.47 -1.09 -12.14 16 11 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 12 C 0.11 1.65 6.61 -3.60 -0.02 1.62 16 13 N -0.58 -8.55 3.00 -172.83 -0.52 -9.07 16 14 C 0.47 6.52 7.71 -11.76 -0.09 6.43 16 15 O -0.52 -7.98 16.04 5.48 0.09 -7.90 16 16 C 0.36 4.08 6.05 -29.81 -0.18 3.90 16 17 O -0.40 -5.02 13.14 5.97 0.08 -4.94 16 18 C -0.13 -1.10 1.91 -92.20 -0.18 -1.28 16 19 C -0.11 -0.84 5.03 -26.88 -0.14 -0.97 16 20 C -0.08 -0.53 6.46 37.22 0.24 -0.29 16 21 S -0.27 -2.22 22.33 -107.50 -2.40 -4.62 16 22 C -0.08 -0.54 6.45 37.20 0.24 -0.30 16 23 C -0.11 -0.87 4.44 -26.90 -0.12 -0.99 16 24 C 0.08 1.22 6.12 -3.37 -0.02 1.20 16 25 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H -0.01 -0.24 8.13 -51.93 -0.42 -0.66 16 28 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 31 H 0.09 1.28 7.05 -51.93 -0.37 0.91 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 0.94 7.91 -51.93 -0.41 0.53 16 34 H 0.08 0.65 8.06 -51.93 -0.42 0.24 16 35 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.12 1.65 4.49 -53.91 -0.24 1.40 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -30.36 366.80 -10.50 -40.85 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.18 Total: -1.50 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.72 Total: 3.10 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.87 Total: -46.62 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.17 Total: -12.84 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.40 Total: -4.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.36 -10.50 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866156256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.199 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds