Wall clock time and date at job start Fri Apr 10 2020 18:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47579 * 264.25052 * 3 2 1 5 5 C 1.34946 * 126.04080 * 125.30514 * 4 3 2 6 6 C 1.35312 * 107.75008 * 180.15132 * 5 4 3 7 7 C 1.50700 * 126.04194 * 179.87554 * 6 5 4 8 8 N 1.46500 * 109.47412 * 269.71540 * 7 6 5 9 9 S 1.65593 * 119.99925 * 164.99847 * 8 7 6 10 10 O 1.42096 * 106.40460 * 311.46213 * 9 8 7 11 11 O 1.42108 * 106.40218 * 178.54273 * 9 8 7 12 12 N 1.65606 * 107.21842 * 65.00539 * 9 8 7 13 13 C 1.46497 * 119.99739 * 269.99739 * 12 9 8 14 14 C 1.46497 * 120.00188 * 89.99816 * 12 9 8 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 9 16 16 C 1.53000 * 109.47021 * 240.00233 * 14 12 9 17 17 C 1.50694 * 109.47115 * 120.00014 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.39877 * 107.91865 * 359.61320 * 6 5 4 26 26 N 1.30834 * 108.19884 * 0.24513 * 25 6 5 27 27 H 4.40647 * 5.51457 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47151 * 144.25096 * 3 2 1 29 29 H 1.08999 * 109.47410 * 24.25580 * 3 2 1 30 30 H 1.08002 * 126.12668 * 0.02562 * 5 4 3 31 31 H 1.09006 * 109.46596 * 149.71451 * 7 6 5 32 32 H 1.09004 * 109.47086 * 29.71751 * 7 6 5 33 33 H 0.97005 * 119.99538 * 345.00608 * 8 7 6 34 34 H 1.09001 * 109.46905 * 270.00036 * 13 12 9 35 35 H 1.09005 * 109.47144 * 29.99977 * 13 12 9 36 36 H 1.08993 * 109.47302 * 150.00165 * 13 12 9 37 37 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 38 38 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 39 39 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 41 41 H 1.07999 * 125.89735 * 180.21444 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 0.1392 1.3742 5 6 3.9939 -0.6925 1.9990 6 6 4.1881 -0.2199 3.2519 7 6 5.0723 -0.8364 4.3050 8 7 4.2932 -1.7881 5.1010 9 16 5.0667 -2.8807 6.0757 10 8 6.0799 -3.4809 5.2806 11 8 4.0487 -3.6258 6.7300 12 7 5.8468 -2.0190 7.2553 13 6 7.2229 -1.5644 7.0413 14 6 5.1609 -1.7115 8.5127 15 1 4.1537 -2.1277 8.4884 16 6 5.0810 -0.1941 8.6921 17 6 5.9263 -2.3136 9.6627 18 1 6.8327 -2.8702 9.4758 19 6 5.4687 -2.1550 10.9537 20 7 4.3646 -1.4776 11.1814 21 14 6.4170 -2.9020 12.3792 22 1 5.9209 -4.2778 12.6369 23 1 7.8620 -2.9522 12.0403 24 1 6.2220 -2.0699 13.5936 25 6 3.4277 0.9454 3.3950 26 7 2.7956 1.1615 2.2701 27 1 -1.0501 0.0002 0.0000 28 1 3.0089 0.8348 -0.6004 29 1 3.0097 -0.9361 -0.4222 30 1 4.4446 -1.5779 1.5756 31 1 5.4633 -0.0535 4.9550 32 1 5.9007 -1.3572 3.8246 33 1 3.3242 -1.7782 5.0570 34 1 7.9167 -2.3273 7.3947 35 1 7.3865 -1.3891 5.9780 36 1 7.3896 -0.6387 7.5920 37 1 4.5703 0.0347 9.6274 38 1 6.0880 0.2225 8.7162 39 1 4.5274 0.2414 7.8603 40 1 4.0425 -1.3663 12.0896 41 1 3.3717 1.5602 4.2812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882348196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:10 Heat of formation + Delta-G solvation = 41.003278 kcal Electronic energy + Delta-G solvation = -25466.911836 eV Core-core repulsion = 21704.644665 eV Total energy + Delta-G solvation = -3762.267171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20310 -38.25633 -37.83441 -36.80726 -36.62492 -35.40873 -34.47741 -32.73066 -31.22422 -30.84889 -28.41388 -27.23044 -26.92490 -25.71217 -22.54328 -22.36772 -21.42987 -20.19518 -19.36138 -18.74813 -18.50569 -18.23590 -17.67955 -17.17047 -16.66207 -16.36713 -15.85063 -15.53719 -15.12165 -14.92635 -14.74884 -14.64629 -14.42246 -14.22597 -13.84253 -13.68401 -13.40352 -13.31889 -13.10259 -13.07171 -12.94998 -12.84848 -12.75732 -12.53411 -12.18867 -12.09124 -11.85956 -11.74487 -11.52897 -11.28028 -11.09115 -10.48283 -10.45913 -10.35811 -9.65307 -9.46344 -8.08348 -6.21401 -0.24898 0.86756 1.15711 1.43915 1.46061 1.54905 1.70875 1.76274 2.21924 2.26435 2.46715 2.76990 3.20009 3.26897 3.53321 3.71207 3.97964 4.12778 4.21741 4.25782 4.35759 4.43274 4.72087 4.76799 4.79541 4.91230 4.93243 4.99509 5.08520 5.13679 5.19245 5.24354 5.28039 5.64459 5.66347 5.78046 5.94197 6.04649 6.11738 6.26628 6.36050 6.53363 6.70246 6.86813 7.47388 8.95609 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.002867 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.421356 B = 9763.397902 C =10065.069069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.246 4.246 3 C 0.242 3.758 4 N -0.377 5.377 5 C 0.085 3.915 6 C -0.258 4.258 7 C 0.197 3.803 8 N -1.116 6.116 9 S 2.797 3.203 10 O -1.007 7.007 11 O -1.023 7.023 12 N -0.997 5.997 13 C 0.101 3.899 14 C 0.273 3.727 15 H 0.023 0.977 16 C -0.135 4.135 17 C -0.536 4.536 18 H 0.056 0.944 19 C 0.016 3.984 20 N -0.914 5.914 21 Si 0.954 3.046 22 H -0.284 1.284 23 H -0.266 1.266 24 H -0.280 1.280 25 C 0.059 3.941 26 N -0.327 5.327 27 H 0.244 0.756 28 H 0.123 0.877 29 H 0.155 0.845 30 H 0.210 0.790 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.417 0.583 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.263 0.737 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 5.761 -22.691 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.247 4.247 3 C 0.123 3.877 4 N -0.159 5.159 5 C -0.062 4.062 6 C -0.271 4.271 7 C 0.071 3.929 8 N -0.878 5.878 9 S 2.806 3.194 10 O -0.990 6.990 11 O -1.007 7.007 12 N -0.838 5.838 13 C -0.044 4.044 14 C 0.169 3.831 15 H 0.041 0.959 16 C -0.195 4.195 17 C -0.576 4.576 18 H 0.074 0.926 19 C -0.183 4.183 20 N -0.554 5.554 21 Si 0.779 3.221 22 H -0.210 1.210 23 H -0.190 1.190 24 H -0.205 1.205 25 C -0.128 4.128 26 N -0.148 5.148 27 H 0.260 0.740 28 H 0.140 0.860 29 H 0.172 0.828 30 H 0.227 0.773 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.252 0.748 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.390 5.621 -23.443 24.148 hybrid contribution 0.002 -0.531 1.653 1.737 sum -1.389 5.090 -21.790 22.419 Atomic orbital electron populations 1.25825 0.97071 0.99502 0.95847 1.23411 0.95409 1.02071 1.03765 1.18850 0.83967 1.07099 0.77806 1.48799 1.35247 1.19502 1.12345 1.22993 0.93415 0.96683 0.93127 1.20013 1.10047 1.00733 0.96330 1.19557 0.91738 0.91153 0.90409 1.55946 1.18579 1.53450 1.59861 1.01178 0.72339 0.73553 0.72282 1.93507 1.59915 1.75415 1.70193 1.93546 1.60530 1.70802 1.75848 1.57552 1.23428 1.73632 1.29227 1.21385 0.81048 1.00533 1.01457 1.18368 0.91302 0.93644 0.79790 0.95930 1.21904 1.00216 0.96316 1.01028 1.21683 1.10172 1.33788 0.91948 0.92557 1.25633 0.95950 0.95651 1.01096 1.69983 1.22539 1.41465 1.21392 0.85629 0.79346 0.78107 0.78974 1.20988 1.19043 1.20505 1.24199 0.94570 0.97147 0.96893 1.77380 1.24502 1.11569 1.01332 0.73960 0.85956 0.82751 0.77318 0.89943 0.89130 0.74833 0.94274 0.89722 0.90343 0.91807 0.93643 0.94291 0.92741 0.78828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 19.25 74.32 1.43 -1.04 16 2 C -0.25 -4.02 13.52 31.12 0.42 -3.60 16 3 C 0.24 2.74 6.99 84.57 0.59 3.33 16 4 N -0.38 -6.81 3.65 -357.17 -1.30 -8.12 16 5 C 0.09 1.39 11.36 83.54 0.95 2.34 16 6 C -0.26 -5.13 5.50 -20.14 -0.11 -5.24 16 7 C 0.20 4.18 6.73 85.63 0.58 4.75 16 8 N -1.12 -30.51 6.05 -190.78 -1.15 -31.66 16 9 S 2.80 105.11 6.09 -56.49 -0.34 104.76 16 10 O -1.01 -38.86 16.68 -128.00 -2.14 -40.99 16 11 O -1.02 -48.38 16.70 -128.00 -2.14 -50.52 16 12 N -1.00 -39.56 3.12 -520.46 -1.62 -41.19 16 13 C 0.10 3.30 9.53 127.77 1.22 4.51 16 14 C 0.27 13.29 2.62 44.24 0.12 13.41 16 15 H 0.02 1.27 6.91 -2.38 -0.02 1.25 16 16 C -0.14 -5.93 8.95 71.98 0.64 -5.28 16 17 C -0.54 -29.01 8.37 25.60 0.21 -28.80 16 18 H 0.06 3.03 7.65 -2.91 -0.02 3.01 16 19 C 0.02 0.89 5.30 84.66 0.45 1.34 16 20 N -0.91 -51.62 11.32 21.45 0.24 -51.37 16 21 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.06 1.28 11.96 85.24 1.02 2.30 16 26 N -0.33 -7.82 12.39 -57.02 -0.71 -8.52 16 27 H 0.24 1.99 7.80 -4.41 -0.03 1.95 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.16 0.57 8.07 -2.39 -0.02 0.55 16 30 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.09 1.74 7.75 -2.38 -0.02 1.72 16 33 H 0.42 10.92 8.64 -96.74 -0.84 10.08 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 2.11 7.79 -2.38 -0.02 2.09 16 36 H 0.08 2.44 6.43 -2.39 -0.02 2.43 16 37 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 38 H 0.04 1.84 6.66 -2.39 -0.02 1.82 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.19 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -77.39 367.71 0.59 -76.80 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.21 Total: 17.28 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 7.52 Total: -11.98 kcal Atomic # 7 Polarization: -136.32 SS G_CDS: -4.55 Total: -140.86 kcal Atomic # 8 Polarization: -87.24 SS G_CDS: -4.27 Total: -91.51 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 105.11 SS G_CDS: -0.34 Total: 104.76 kcal Total: -77.39 0.59 -76.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882348196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.802 kcal (2) G-P(sol) polarization free energy of solvation -77.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds