Wall clock time and date at job start Fri Apr 10 2020 18:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99772 * 2 1 4 4 C 1.50698 * 109.47258 * 275.00144 * 3 2 1 5 5 H 1.08002 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00123 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99986 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99991 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47631 * 89.99443 * 8 6 4 10 10 H 1.48502 * 109.46998 * 209.99740 * 8 6 4 11 11 H 1.48503 * 109.46971 * 329.99448 * 8 6 4 12 12 S 1.65598 * 119.99758 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.39953 * 148.77801 * 12 2 1 14 14 O 1.42100 * 106.40523 * 15.85601 * 12 2 1 15 15 N 1.65603 * 107.21748 * 262.31226 * 12 2 1 16 16 C 1.46503 * 119.99588 * 61.30644 * 15 12 2 17 17 C 1.50699 * 112.85114 * 53.26306 * 16 15 12 18 18 N 1.31796 * 119.12118 * 45.18252 * 17 16 15 19 19 C 1.32339 * 120.81857 * 180.02562 * 18 17 16 20 20 C 1.38593 * 119.09950 * 359.97438 * 19 18 17 21 21 C 1.38600 * 118.40764 * 0.02562 * 20 19 18 22 22 N 1.31788 * 119.12241 * 225.17843 * 17 16 15 23 23 C 1.53781 * 113.68674 * 184.53185 * 16 15 12 24 24 C 1.53773 * 87.08399 * 89.12792 * 23 16 15 25 25 C 1.53777 * 113.61619 * 282.06296 * 16 15 12 26 26 H 1.09006 * 109.47161 * 265.39964 * 1 2 3 27 27 H 1.09000 * 109.47466 * 25.40137 * 1 2 3 28 28 H 1.09000 * 109.47403 * 145.40136 * 1 2 3 29 29 H 1.08998 * 109.47427 * 35.00419 * 3 2 1 30 30 H 1.09004 * 109.47094 * 155.00579 * 3 2 1 31 31 H 0.97003 * 120.00050 * 180.02562 * 7 6 4 32 32 H 0.96997 * 119.99814 * 241.30773 * 15 12 2 33 33 H 1.07998 * 120.44848 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.79893 * 179.97438 * 20 19 18 35 35 H 1.07993 * 120.45191 * 179.97438 * 21 20 19 36 36 H 1.08997 * 113.61456 * 203.67808 * 23 16 15 37 37 H 1.09003 * 113.61380 * 334.57784 * 23 16 15 38 38 H 1.09008 * 113.61441 * 270.88153 * 24 23 16 39 39 H 1.08995 * 113.61836 * 139.97708 * 24 23 16 40 40 H 1.09001 * 113.61212 * 25.35122 * 25 16 15 41 41 H 1.08994 * 113.61619 * 156.25292 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0005 2.9504 -1.6664 7 7 3.5032 3.6470 -0.6706 8 14 3.1782 3.5668 -3.4208 9 1 2.0178 4.4279 -3.7630 10 1 4.4318 4.3532 -3.5446 11 1 3.2264 2.4091 -4.3497 12 16 2.2929 -1.4342 -0.0006 13 8 3.5031 -1.1985 -0.7072 14 8 1.3580 -2.4372 -0.3735 15 7 2.7213 -1.7536 1.5668 16 6 1.6854 -1.9305 2.5876 17 6 0.6587 -2.9656 2.2063 18 7 1.0626 -4.1140 1.7014 19 6 0.1900 -5.0465 1.3546 20 6 -1.1630 -4.8020 1.5293 21 6 -1.5491 -3.5826 2.0632 22 7 -0.6191 -2.6983 2.3868 23 6 2.2435 -2.1107 4.0092 24 6 2.1867 -0.5797 4.1411 25 6 1.0738 -0.6083 3.0802 26 1 -0.3634 -0.0824 1.0244 27 1 -0.3634 0.9283 -0.4408 28 1 -0.3634 -0.8459 -0.5835 29 1 1.6501 2.0043 0.5895 30 1 3.1858 1.1177 0.4342 31 1 3.9667 4.4806 -0.8471 32 1 3.6579 -1.8235 1.8090 33 1 0.5276 -5.9856 0.9417 34 1 -1.8989 -5.5435 1.2553 35 1 -2.5945 -3.3571 2.2131 36 1 1.5632 -2.6325 4.6824 37 1 3.2560 -2.5138 4.0330 38 1 3.0954 -0.0787 3.8073 39 1 1.8486 -0.2379 5.1193 40 1 1.1420 0.2016 2.3539 41 1 0.0738 -0.7193 3.4993 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882684433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:16 Heat of formation + Delta-G solvation = 13.073472 kcal Electronic energy + Delta-G solvation = -27483.190214 eV Core-core repulsion = 23719.711916 eV Total energy + Delta-G solvation = -3763.478298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17911 -38.95120 -36.48390 -35.46493 -35.08520 -33.65395 -32.54276 -32.40174 -31.76897 -27.74363 -26.02413 -25.83341 -24.99875 -24.30819 -22.62405 -22.25444 -19.76728 -18.80979 -17.52783 -17.32155 -17.09151 -16.52673 -16.31297 -15.83004 -15.43941 -15.09015 -14.74133 -14.54671 -14.29329 -13.94326 -13.51418 -13.32579 -13.19115 -12.55373 -12.29101 -12.22226 -12.13021 -11.57174 -11.51817 -11.36914 -11.15569 -11.12734 -11.03669 -10.85019 -10.77524 -10.67224 -10.62980 -10.47667 -10.33746 -9.99016 -9.71812 -9.48302 -9.24713 -9.10336 -8.42260 -8.01411 -6.04000 -4.07298 0.91248 1.21481 1.30197 3.33208 3.39475 3.42709 3.46755 3.69592 3.85434 4.15681 4.28301 4.47476 4.54061 4.62989 4.69004 4.88565 4.96446 5.01720 5.14383 5.20989 5.31485 5.37168 5.63280 5.69736 5.76460 5.81867 5.89234 5.99034 6.08184 6.14493 6.24561 6.38931 6.42573 6.53495 6.60081 7.07436 7.15716 7.27504 7.45421 7.65324 7.94179 8.19429 8.23604 8.95040 9.57661 11.04495 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.004636 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.270043 B = 6037.778897 C = 6499.218874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.994 5.994 3 C 0.259 3.741 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 S 2.783 3.217 13 O -0.965 6.965 14 O -0.992 6.992 15 N -1.100 6.100 16 C 0.220 3.780 17 C 0.322 3.678 18 N -0.483 5.483 19 C 0.154 3.846 20 C -0.232 4.232 21 C 0.145 3.855 22 N -0.505 5.505 23 C -0.118 4.118 24 C -0.136 4.136 25 C -0.144 4.144 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.417 0.583 33 H 0.163 0.837 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 -14.142 11.612 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.837 5.837 3 C 0.138 3.862 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 S 2.791 3.209 13 O -0.949 6.949 14 O -0.975 6.975 15 N -0.856 5.856 16 C 0.128 3.872 17 C 0.052 3.948 18 N -0.196 5.196 19 C -0.012 4.012 20 C -0.254 4.254 21 C -0.021 4.021 22 N -0.219 5.219 23 C -0.158 4.158 24 C -0.174 4.174 25 C -0.184 4.184 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.180 0.820 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.800 -13.826 11.062 19.349 hybrid contribution -0.245 -0.173 -1.024 1.067 sum -8.045 -13.999 10.038 19.013 Atomic orbital electron populations 1.21369 0.80043 1.02961 1.00566 1.57571 1.14235 1.23188 1.88699 1.19021 0.90765 0.78864 0.97599 1.21496 1.35903 1.06157 0.92976 0.92265 1.24918 0.95150 0.96523 0.97417 1.69917 1.37483 1.15303 1.30865 0.86528 0.77500 0.78804 0.84821 1.20638 1.21057 1.19755 1.01914 0.73388 0.72957 0.72660 1.93646 1.46585 1.85588 1.69073 1.93513 1.64443 1.57947 1.81624 1.55851 1.14099 1.88054 1.27613 1.19430 0.86147 0.92555 0.89106 1.22906 0.89906 0.91346 0.90613 1.68081 1.39983 1.01982 1.09556 1.23119 0.89470 0.97412 0.91243 1.22841 0.98677 1.00265 1.03568 1.23121 0.99367 0.88804 0.90795 1.68035 1.01672 1.33677 1.18519 1.23119 1.01721 0.98048 0.92893 1.22820 0.99954 0.94957 0.99619 1.23595 0.99580 0.95903 0.99308 0.93508 0.90470 0.92533 0.94579 0.94836 0.92736 0.74897 0.82007 0.83936 0.81674 0.89281 0.90169 0.89299 0.90777 0.88777 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.21 59.85 0.61 2.39 16 2 N -0.99 -21.13 1.99 -123.05 -0.24 -21.37 16 3 C 0.26 6.50 4.80 -5.20 -0.02 6.47 16 4 C -0.53 -14.94 9.38 -34.44 -0.32 -15.26 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 S 2.78 58.32 5.98 -107.50 -0.64 57.68 16 13 O -0.97 -24.25 17.40 -57.17 -0.99 -25.25 16 14 O -0.99 -21.34 13.80 -57.17 -0.79 -22.13 16 15 N -1.10 -18.05 5.61 0.26 0.00 -18.05 16 16 C 0.22 3.19 1.26 -132.16 -0.17 3.02 16 17 C 0.32 4.90 5.16 -157.20 -0.81 4.09 16 18 N -0.48 -7.51 9.05 -10.73 -0.10 -7.61 16 19 C 0.15 1.91 11.31 -17.20 -0.19 1.72 16 20 C -0.23 -2.34 10.17 -39.32 -0.40 -2.74 16 21 C 0.15 1.59 11.31 -17.20 -0.19 1.40 16 22 N -0.51 -6.95 8.92 -10.73 -0.10 -7.05 16 23 C -0.12 -1.33 7.33 -25.92 -0.19 -1.52 16 24 C -0.14 -1.54 7.99 -25.92 -0.21 -1.75 16 25 C -0.14 -1.96 6.13 -25.92 -0.16 -2.12 16 26 H 0.05 0.75 6.35 -51.93 -0.33 0.42 16 27 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 28 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 29 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.03 0.89 7.82 -51.93 -0.41 0.48 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.42 5.98 8.76 -34.47 -0.30 5.68 16 33 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 38 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.47 5.42 -51.93 -0.28 1.19 16 41 H 0.11 1.35 7.22 -51.93 -0.37 0.97 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -35.97 349.05 -9.45 -45.41 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.40 Total: 4.05 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.16 Total: -2.64 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: 0.30 Total: -79.48 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -1.78 Total: -47.37 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.64 Total: 57.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.97 -9.45 -45.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882684433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.488 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds