Wall clock time and date at job start Fri Apr 10 2020 18:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99772 * 2 1 4 4 C 1.50698 * 109.47258 * 275.00144 * 3 2 1 5 5 H 1.08002 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00123 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99986 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99991 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47631 * 89.99443 * 8 6 4 10 10 H 1.48502 * 109.46998 * 209.99740 * 8 6 4 11 11 H 1.48503 * 109.46971 * 329.99448 * 8 6 4 12 12 S 1.65598 * 119.99758 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.39953 * 148.77801 * 12 2 1 14 14 O 1.42100 * 106.40523 * 15.85601 * 12 2 1 15 15 N 1.65603 * 107.21748 * 262.31226 * 12 2 1 16 16 C 1.46503 * 119.99588 * 61.30644 * 15 12 2 17 17 C 1.50699 * 112.85114 * 53.26306 * 16 15 12 18 18 N 1.31796 * 119.12118 * 45.18252 * 17 16 15 19 19 C 1.32339 * 120.81857 * 180.02562 * 18 17 16 20 20 C 1.38593 * 119.09950 * 359.97438 * 19 18 17 21 21 C 1.38600 * 118.40764 * 0.02562 * 20 19 18 22 22 N 1.31788 * 119.12241 * 225.17843 * 17 16 15 23 23 C 1.53781 * 113.68674 * 184.53185 * 16 15 12 24 24 C 1.53773 * 87.08399 * 89.12792 * 23 16 15 25 25 C 1.53777 * 113.61619 * 282.06296 * 16 15 12 26 26 H 1.09006 * 109.47161 * 265.39964 * 1 2 3 27 27 H 1.09000 * 109.47466 * 25.40137 * 1 2 3 28 28 H 1.09000 * 109.47403 * 145.40136 * 1 2 3 29 29 H 1.08998 * 109.47427 * 35.00419 * 3 2 1 30 30 H 1.09004 * 109.47094 * 155.00579 * 3 2 1 31 31 H 0.97003 * 120.00050 * 180.02562 * 7 6 4 32 32 H 0.96997 * 119.99814 * 241.30773 * 15 12 2 33 33 H 1.07998 * 120.44848 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.79893 * 179.97438 * 20 19 18 35 35 H 1.07993 * 120.45191 * 179.97438 * 21 20 19 36 36 H 1.08997 * 113.61456 * 203.67808 * 23 16 15 37 37 H 1.09003 * 113.61380 * 334.57784 * 23 16 15 38 38 H 1.09008 * 113.61441 * 270.88153 * 24 23 16 39 39 H 1.08995 * 113.61836 * 139.97708 * 24 23 16 40 40 H 1.09001 * 113.61212 * 25.35122 * 25 16 15 41 41 H 1.08994 * 113.61619 * 156.25292 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0005 2.9504 -1.6664 7 7 3.5032 3.6470 -0.6706 8 14 3.1782 3.5668 -3.4208 9 1 2.0178 4.4279 -3.7630 10 1 4.4318 4.3532 -3.5446 11 1 3.2264 2.4091 -4.3497 12 16 2.2929 -1.4342 -0.0006 13 8 3.5031 -1.1985 -0.7072 14 8 1.3580 -2.4372 -0.3735 15 7 2.7213 -1.7536 1.5668 16 6 1.6854 -1.9305 2.5876 17 6 0.6587 -2.9656 2.2063 18 7 1.0626 -4.1140 1.7014 19 6 0.1900 -5.0465 1.3546 20 6 -1.1630 -4.8020 1.5293 21 6 -1.5491 -3.5826 2.0632 22 7 -0.6191 -2.6983 2.3868 23 6 2.2435 -2.1107 4.0092 24 6 2.1867 -0.5797 4.1411 25 6 1.0738 -0.6083 3.0802 26 1 -0.3634 -0.0824 1.0244 27 1 -0.3634 0.9283 -0.4408 28 1 -0.3634 -0.8459 -0.5835 29 1 1.6501 2.0043 0.5895 30 1 3.1858 1.1177 0.4342 31 1 3.9667 4.4806 -0.8471 32 1 3.6579 -1.8235 1.8090 33 1 0.5276 -5.9856 0.9417 34 1 -1.8989 -5.5435 1.2553 35 1 -2.5945 -3.3571 2.2131 36 1 1.5632 -2.6325 4.6824 37 1 3.2560 -2.5138 4.0330 38 1 3.0954 -0.0787 3.8073 39 1 1.8486 -0.2379 5.1193 40 1 1.1420 0.2016 2.3539 41 1 0.0738 -0.7193 3.4993 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882684433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:15 Heat of formation + Delta-G solvation = -13.752712 kcal Electronic energy + Delta-G solvation = -27484.353484 eV Core-core repulsion = 23719.711916 eV Total energy + Delta-G solvation = -3764.641569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12532 -39.95178 -38.24442 -37.25730 -36.86043 -34.63052 -34.49893 -33.69451 -32.74607 -29.69116 -27.04817 -26.83866 -26.74526 -25.19783 -24.22766 -23.57006 -20.96682 -20.17134 -19.08107 -18.59830 -18.27163 -18.26870 -17.95479 -17.17917 -16.74415 -16.33252 -16.11851 -15.77093 -15.51966 -15.16801 -15.02803 -14.71620 -14.32860 -14.06956 -14.01160 -13.67680 -13.32911 -13.24654 -13.14387 -13.07375 -12.92394 -12.89540 -12.52785 -12.40326 -12.17963 -11.99891 -11.82390 -11.75499 -11.71317 -11.61315 -11.34313 -10.60886 -10.56125 -10.25795 -10.05868 -9.80806 -8.20602 -6.31906 -0.35901 0.03689 0.33734 1.37564 1.40014 1.50578 1.95007 2.39205 2.50638 2.83000 2.94401 3.09931 3.26758 3.46564 3.60587 3.70977 3.88064 3.89425 4.05054 4.14054 4.25146 4.34463 4.49350 4.64953 4.74264 4.74922 4.83864 4.88536 4.95915 5.01050 5.10240 5.12652 5.16045 5.22507 5.44830 5.53558 5.57480 5.67554 5.84691 6.06467 6.12526 6.20847 6.75225 7.25376 7.36511 8.86774 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.004636 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.270043 B = 6037.778897 C = 6499.218874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.997 5.997 3 C 0.277 3.723 4 C -0.549 4.549 5 H 0.047 0.953 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.278 1.278 12 S 2.797 3.203 13 O -1.015 7.015 14 O -0.998 6.998 15 N -1.089 6.089 16 C 0.203 3.797 17 C 0.299 3.701 18 N -0.518 5.518 19 C 0.129 3.871 20 C -0.217 4.217 21 C 0.134 3.866 22 N -0.519 5.519 23 C -0.104 4.104 24 C -0.129 4.129 25 C -0.146 4.146 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.014 0.986 31 H 0.268 0.732 32 H 0.425 0.575 33 H 0.185 0.815 34 H 0.183 0.817 35 H 0.203 0.797 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -14.950 12.344 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.839 5.839 3 C 0.154 3.846 4 C -0.589 4.589 5 H 0.065 0.935 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.203 1.203 12 S 2.806 3.194 13 O -0.999 6.999 14 O -0.981 6.981 15 N -0.849 5.849 16 C 0.112 3.888 17 C 0.029 3.971 18 N -0.232 5.232 19 C -0.037 4.037 20 C -0.238 4.238 21 C -0.032 4.032 22 N -0.233 5.233 23 C -0.144 4.144 24 C -0.167 4.167 25 C -0.186 4.186 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.261 0.739 33 H 0.202 0.798 34 H 0.200 0.800 35 H 0.220 0.780 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.415 -14.646 11.796 21.031 hybrid contribution 0.148 -0.042 -1.201 1.211 sum -9.267 -14.688 10.594 20.343 Atomic orbital electron populations 1.21465 0.78370 1.02773 1.02071 1.57418 1.15306 1.21927 1.89210 1.18580 0.90166 0.80102 0.95752 1.21805 1.36338 1.06585 0.94144 0.93509 1.25690 0.94763 0.96698 1.01320 1.69996 1.37781 1.15681 1.32598 0.85625 0.78272 0.78217 0.80017 1.18926 1.20135 1.20342 1.01232 0.72295 0.72647 0.73270 1.93573 1.48644 1.86210 1.71446 1.93495 1.64420 1.57791 1.82412 1.55386 1.15255 1.87576 1.26715 1.19802 0.86017 0.93300 0.89728 1.22900 0.90565 0.91590 0.92002 1.68030 1.41557 1.02823 1.10742 1.23696 0.90553 0.97885 0.91528 1.23266 0.98487 1.00663 1.01368 1.23865 1.00549 0.88741 0.90008 1.68038 1.01503 1.34660 1.19087 1.23104 1.02434 0.98044 0.90778 1.22798 0.98745 0.95127 0.99993 1.23604 1.00897 0.94579 0.99483 0.91140 0.90730 0.92496 0.94968 0.96784 0.92312 0.73908 0.79818 0.79950 0.78042 0.87811 0.89191 0.90197 0.88501 0.91221 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.62 10.21 127.77 1.30 4.92 16 2 N -1.00 -43.21 1.99 -543.23 -1.08 -44.29 16 3 C 0.28 14.29 4.80 85.63 0.41 14.70 16 4 C -0.55 -31.85 9.38 25.60 0.24 -31.61 16 5 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 6 C 0.02 0.86 5.46 84.65 0.46 1.32 16 7 N -0.92 -54.11 13.29 21.45 0.28 -53.83 16 8 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 9 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 S 2.80 119.81 5.98 -56.49 -0.34 119.47 16 13 O -1.01 -52.86 17.40 -128.00 -2.23 -55.09 16 14 O -1.00 -43.22 13.80 -128.00 -1.77 -44.98 16 15 N -1.09 -36.16 5.61 -153.09 -0.86 -37.02 16 16 C 0.20 5.74 1.26 3.38 0.00 5.74 16 17 C 0.30 8.77 5.16 138.75 0.72 9.49 16 18 N -0.52 -15.64 9.05 -187.85 -1.70 -17.34 16 19 C 0.13 2.96 11.31 84.70 0.96 3.92 16 20 C -0.22 -3.72 10.17 22.44 0.23 -3.49 16 21 C 0.13 2.54 11.31 84.70 0.96 3.50 16 22 N -0.52 -13.33 8.92 -187.85 -1.68 -15.00 16 23 C -0.10 -2.17 7.33 31.12 0.23 -1.94 16 24 C -0.13 -2.75 7.99 31.12 0.25 -2.50 16 25 C -0.15 -3.85 6.13 31.12 0.19 -3.66 16 26 H 0.07 2.23 6.35 -2.38 -0.02 2.21 16 27 H 0.07 2.74 8.04 -2.39 -0.02 2.72 16 28 H 0.06 2.07 7.15 -2.39 -0.02 2.05 16 29 H 0.03 1.67 8.11 -2.39 -0.02 1.65 16 30 H 0.01 0.78 7.82 -2.38 -0.02 0.76 16 31 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.42 12.47 8.76 -96.75 -0.85 11.62 16 33 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.10 1.89 8.09 -2.39 -0.02 1.87 16 37 H 0.09 1.70 8.11 -2.39 -0.02 1.68 16 38 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 2.18 5.42 -2.39 -0.01 2.17 16 41 H 0.12 2.80 7.22 -2.39 -0.02 2.78 16 Total: -1.00 -78.55 349.05 -1.17 -79.72 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.21 Total: 20.55 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.95 Total: 0.40 kcal Atomic # 7 Polarization: -162.45 SS G_CDS: -5.03 Total: -167.48 kcal Atomic # 8 Polarization: -96.08 SS G_CDS: -3.99 Total: -100.07 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 119.81 SS G_CDS: -0.34 Total: 119.47 kcal Total: -78.55 -1.17 -79.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882684433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.968 kcal (2) G-P(sol) polarization free energy of solvation -78.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds