Wall clock time and date at job start Fri Apr 10 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46899 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 119.99920 * 8 6 4 11 11 H 1.48495 * 109.46810 * 239.99849 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 S 1.65600 * 119.99691 * 239.99718 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 N 1.65599 * 107.22069 * 270.00182 * 14 12 2 18 18 C 1.47221 * 121.29253 * 269.71725 * 17 14 12 19 19 C 1.53346 * 107.81190 * 115.93662 * 18 17 14 20 20 C 1.50409 * 110.71433 * 47.42912 * 19 18 17 21 21 N 1.32966 * 118.38945 * 160.56608 * 20 19 18 22 22 C 1.31572 * 121.09722 * 178.74233 * 21 20 19 23 23 N 1.31809 * 121.73899 * 0.04043 * 22 21 20 24 24 C 1.32225 * 120.57658 * 0.29460 * 23 22 21 25 25 C 1.37768 * 122.89281 * 339.83535 * 20 19 18 26 26 C 1.46790 * 121.29798 * 89.99547 * 17 14 12 27 27 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 28 28 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 30 30 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 32 32 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 33 33 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 34 34 H 1.08998 * 109.74297 * 235.56322 * 18 17 14 35 35 H 1.08996 * 109.74690 * 356.28073 * 18 17 14 36 36 H 1.08998 * 109.33045 * 287.05342 * 19 18 17 37 37 H 1.09005 * 109.14255 * 167.68901 * 19 18 17 38 38 H 1.08004 * 119.13102 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.38103 * 179.88439 * 24 23 22 40 40 H 1.08995 * 109.47106 * 344.31360 * 26 17 14 41 41 H 1.08999 * 109.46228 * 104.29552 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.6903 1.4972 2.1193 16 8 2.8227 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8180 18 6 5.3388 -1.2395 2.3146 19 6 5.6892 -2.1274 1.1144 20 6 6.2100 -1.2979 -0.0270 21 7 6.9164 -1.9028 -0.9773 22 6 7.3766 -1.2332 -2.0122 23 7 7.1608 0.0594 -2.1534 24 6 6.4722 0.7296 -1.2451 25 6 5.9747 0.0551 -0.1370 26 6 5.2018 0.8298 0.8965 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1614 -3.4843 31 1 0.7375 -2.1444 1.9993 32 1 2.4628 -2.5819 1.9863 33 1 1.5294 -2.5969 0.4707 34 1 6.2522 -0.8725 2.7828 35 1 4.7560 -1.8084 3.0389 36 1 4.7977 -2.6643 0.7903 37 1 6.4519 -2.8468 1.4126 38 1 7.9464 -1.7565 -2.7659 39 1 6.2988 1.7890 -1.3630 40 1 4.4488 1.4437 0.4023 41 1 5.8838 1.4710 1.4549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882868851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:22 Heat of formation + Delta-G solvation = -19.175519 kcal Electronic energy + Delta-G solvation = -27764.310574 eV Core-core repulsion = 23999.433854 eV Total energy + Delta-G solvation = -3764.876719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08726 -37.35099 -36.88467 -36.21420 -35.38384 -34.01722 -32.67228 -31.91858 -30.83531 -29.15021 -25.89196 -25.60019 -25.24740 -24.66771 -23.15146 -21.36058 -20.69045 -18.68962 -17.70483 -17.18061 -17.02752 -16.58033 -16.24553 -15.91037 -15.38322 -14.92252 -14.53709 -14.24044 -13.85976 -13.70154 -13.55984 -13.36516 -13.17664 -12.80543 -12.51450 -12.38883 -12.07452 -11.92292 -11.83938 -11.63412 -11.47561 -11.28864 -11.28022 -11.05038 -10.93246 -10.81415 -10.47716 -10.29489 -10.28268 -10.15194 -9.39240 -9.19076 -9.10567 -8.90155 -8.55304 -8.03626 -6.16954 -4.25131 1.01754 1.08475 1.20480 3.18312 3.23195 3.28038 3.31806 3.87565 3.93221 4.12216 4.29342 4.34132 4.51654 4.61264 4.76812 4.99497 5.05514 5.14129 5.15180 5.36442 5.44013 5.52537 5.57619 5.66577 5.69276 5.79468 5.95995 6.10227 6.21180 6.27846 6.49516 6.54465 6.63262 6.80818 6.83977 7.04584 7.11307 7.39858 7.54847 7.70220 7.97533 8.18259 8.21929 8.78033 9.41974 10.87806 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.008953 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.316457 B = 3126.840215 C = 5118.144131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.057 0.943 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.107 3.893 14 S 2.781 3.219 15 O -0.975 6.975 16 O -0.991 6.991 17 N -1.010 6.010 18 C 0.124 3.876 19 C -0.090 4.090 20 C 0.195 3.805 21 N -0.524 5.524 22 C 0.287 3.713 23 N -0.522 5.522 24 C 0.160 3.840 25 C -0.182 4.182 26 C 0.179 3.821 27 H 0.093 0.907 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.191 0.809 39 H 0.170 0.830 40 H 0.109 0.891 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 -3.456 6.525 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.831 5.831 13 C -0.040 4.040 14 S 2.792 3.208 15 O -0.959 6.959 16 O -0.975 6.975 17 N -0.847 5.847 18 C -0.003 4.003 19 C -0.129 4.129 20 C 0.051 3.949 21 N -0.238 5.238 22 C -0.002 4.002 23 N -0.236 5.236 24 C -0.008 4.008 25 C -0.187 4.187 26 C 0.052 3.948 27 H 0.111 0.889 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.208 0.792 39 H 0.187 0.813 40 H 0.127 0.873 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.860 -3.327 6.467 12.252 hybrid contribution -0.057 -0.350 -0.999 1.060 sum 9.803 -3.676 5.468 11.811 Atomic orbital electron populations 1.22050 0.97865 0.99715 1.00781 1.18723 0.91955 0.92530 0.80186 0.92536 1.21336 1.31735 1.13029 0.90065 0.92194 1.24860 0.94880 0.94915 0.98787 1.69876 1.36111 1.22520 1.23730 0.86600 0.78737 0.79796 0.83300 1.19998 1.20817 1.20855 1.57777 1.63985 1.21474 1.39866 1.21190 0.98955 0.81962 1.01860 1.01956 0.72081 0.73569 0.73228 1.93587 1.83463 1.32084 1.86772 1.93537 1.85685 1.76336 1.41990 1.58494 1.30584 1.35865 1.59707 1.21498 0.96958 0.86849 0.94975 1.20871 1.02488 0.97412 0.92110 1.20969 0.89827 0.90599 0.93547 1.68350 1.11530 1.40775 1.03155 1.24763 0.94134 0.87579 0.93686 1.68415 1.15740 1.10214 1.29194 1.23149 0.89353 1.00778 0.87495 1.21327 1.01789 0.96325 0.99301 1.19962 0.96711 0.89881 0.88293 0.88893 0.94851 0.96864 0.92646 0.93737 0.93301 0.90217 0.90507 0.87948 0.88361 0.88529 0.79225 0.81292 0.87260 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.97 37.16 0.33 -3.00 16 2 C 0.27 6.25 2.62 -69.08 -0.18 6.07 16 3 H 0.06 1.45 6.91 -51.93 -0.36 1.09 16 4 C -0.52 -12.93 7.99 -34.44 -0.28 -13.20 16 5 H 0.06 1.49 7.33 -52.49 -0.38 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.69 11.32 55.43 0.63 -23.06 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.99 -19.40 3.12 -115.85 -0.36 -19.76 16 13 C 0.11 1.80 9.28 59.85 0.56 2.36 16 14 S 2.78 51.18 6.09 -107.50 -0.65 50.53 16 15 O -0.98 -20.73 15.62 -57.17 -0.89 -21.63 16 16 O -0.99 -18.77 15.89 -57.17 -0.91 -19.68 16 17 N -1.01 -15.14 3.31 -114.80 -0.38 -15.52 16 18 C 0.12 1.47 6.49 -3.47 -0.02 1.44 16 19 C -0.09 -1.11 6.15 -27.85 -0.17 -1.28 16 20 C 0.19 2.93 6.65 -82.41 -0.55 2.39 16 21 N -0.52 -8.14 10.31 -11.00 -0.11 -8.25 16 22 C 0.29 4.22 12.28 -92.33 -1.13 3.09 16 23 N -0.52 -8.16 10.45 -14.57 -0.15 -8.32 16 24 C 0.16 2.36 10.94 -17.12 -0.19 2.17 16 25 C -0.18 -2.72 5.82 -104.62 -0.61 -3.33 16 26 C 0.18 2.55 6.14 -5.12 -0.03 2.52 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 28 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 29 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 33 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.14 7.03 -51.93 -0.36 0.78 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.17 2.03 8.06 -52.49 -0.42 1.60 16 40 H 0.11 1.74 7.42 -51.93 -0.39 1.36 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.70 346.12 -10.50 -42.20 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.49 Total: 1.70 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.36 Total: 0.90 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -0.38 Total: -74.90 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.80 Total: -41.30 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 51.18 SS G_CDS: -0.65 Total: 50.53 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.70 -10.50 -42.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882868851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.025 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds