Wall clock time and date at job start Fri Apr 10 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46899 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 119.99920 * 8 6 4 11 11 H 1.48495 * 109.46810 * 239.99849 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 S 1.65600 * 119.99691 * 239.99718 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 N 1.65599 * 107.22069 * 270.00182 * 14 12 2 18 18 C 1.47221 * 121.29253 * 269.71725 * 17 14 12 19 19 C 1.53346 * 107.81190 * 115.93662 * 18 17 14 20 20 C 1.50409 * 110.71433 * 47.42912 * 19 18 17 21 21 N 1.32966 * 118.38945 * 160.56608 * 20 19 18 22 22 C 1.31572 * 121.09722 * 178.74233 * 21 20 19 23 23 N 1.31809 * 121.73899 * 0.04043 * 22 21 20 24 24 C 1.32225 * 120.57658 * 0.29460 * 23 22 21 25 25 C 1.37768 * 122.89281 * 339.83535 * 20 19 18 26 26 C 1.46790 * 121.29798 * 89.99547 * 17 14 12 27 27 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 28 28 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 30 30 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 32 32 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 33 33 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 34 34 H 1.08998 * 109.74297 * 235.56322 * 18 17 14 35 35 H 1.08996 * 109.74690 * 356.28073 * 18 17 14 36 36 H 1.08998 * 109.33045 * 287.05342 * 19 18 17 37 37 H 1.09005 * 109.14255 * 167.68901 * 19 18 17 38 38 H 1.08004 * 119.13102 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.38103 * 179.88439 * 24 23 22 40 40 H 1.08995 * 109.47106 * 344.31360 * 26 17 14 41 41 H 1.08999 * 109.46228 * 104.29552 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.6903 1.4972 2.1193 16 8 2.8227 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8180 18 6 5.3388 -1.2395 2.3146 19 6 5.6892 -2.1274 1.1144 20 6 6.2100 -1.2979 -0.0270 21 7 6.9164 -1.9028 -0.9773 22 6 7.3766 -1.2332 -2.0122 23 7 7.1608 0.0594 -2.1534 24 6 6.4722 0.7296 -1.2451 25 6 5.9747 0.0551 -0.1370 26 6 5.2018 0.8298 0.8965 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1614 -3.4843 31 1 0.7375 -2.1444 1.9993 32 1 2.4628 -2.5819 1.9863 33 1 1.5294 -2.5969 0.4707 34 1 6.2522 -0.8725 2.7828 35 1 4.7560 -1.8084 3.0389 36 1 4.7977 -2.6643 0.7903 37 1 6.4519 -2.8468 1.4126 38 1 7.9464 -1.7565 -2.7659 39 1 6.2988 1.7890 -1.3630 40 1 4.4488 1.4437 0.4023 41 1 5.8838 1.4710 1.4549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882868851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:21 Heat of formation + Delta-G solvation = -40.403485 kcal Electronic energy + Delta-G solvation = -27765.231087 eV Core-core repulsion = 23999.433854 eV Total energy + Delta-G solvation = -3765.797233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19350 -38.47969 -38.39382 -37.88426 -36.91689 -35.13435 -34.53816 -33.04589 -31.90320 -30.92917 -27.28278 -27.04485 -26.98778 -25.74458 -24.25265 -22.73258 -22.21824 -19.96423 -19.07711 -18.55662 -18.39500 -18.30924 -17.42905 -17.26459 -16.88854 -16.33037 -15.93153 -15.45134 -15.20042 -14.93371 -14.87888 -14.74776 -14.53075 -14.28294 -13.76274 -13.67989 -13.51446 -13.38851 -13.25884 -13.20700 -13.05112 -12.85614 -12.78965 -12.74086 -12.43542 -12.27131 -12.17645 -12.03742 -11.83648 -11.40593 -11.19125 -10.54563 -10.33804 -10.24256 -10.06694 -9.64328 -8.14561 -6.26393 -0.38862 -0.05680 0.07384 1.31898 1.37767 1.43487 1.89351 2.36385 2.52885 2.75397 3.06478 3.14563 3.25132 3.32437 3.47758 3.62202 3.89910 3.91664 4.10027 4.23142 4.32888 4.46525 4.51986 4.58809 4.66995 4.74129 4.79090 4.80748 4.95524 4.97456 5.06119 5.12850 5.18216 5.25906 5.40531 5.46717 5.59130 5.73786 5.85046 5.99407 6.08976 6.26937 6.82159 7.09692 7.42513 8.89841 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.008953 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.316457 B = 3126.840215 C = 5118.144131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.277 3.723 3 H 0.029 0.971 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.028 3.972 7 N -0.910 5.910 8 Si 0.938 3.062 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.288 1.288 12 N -0.997 5.997 13 C 0.100 3.900 14 S 2.796 3.204 15 O -1.008 7.008 16 O -0.995 6.995 17 N -1.006 6.006 18 C 0.120 3.880 19 C -0.087 4.087 20 C 0.182 3.818 21 N -0.537 5.537 22 C 0.278 3.722 23 N -0.540 5.540 24 C 0.149 3.851 25 C -0.192 4.192 26 C 0.178 3.822 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.020 0.980 30 H 0.263 0.737 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.218 0.782 39 H 0.188 0.812 40 H 0.087 0.913 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.036 -4.773 7.362 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.172 3.828 3 H 0.047 0.953 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.550 5.550 8 Si 0.766 3.234 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.214 1.214 12 N -0.838 5.838 13 C -0.045 4.045 14 S 2.806 3.194 15 O -0.992 6.992 16 O -0.979 6.979 17 N -0.845 5.845 18 C -0.005 4.005 19 C -0.126 4.126 20 C 0.038 3.962 21 N -0.251 5.251 22 C -0.010 4.010 23 N -0.254 5.254 24 C -0.018 4.018 25 C -0.197 4.197 26 C 0.052 3.948 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.234 0.766 39 H 0.205 0.795 40 H 0.105 0.895 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.157 -4.669 7.320 14.137 hybrid contribution -0.399 0.037 -1.220 1.284 sum 10.758 -4.631 6.100 13.206 Atomic orbital electron populations 1.21941 0.97968 0.99991 0.99988 1.18341 0.91841 0.91358 0.81210 0.95343 1.21481 1.30827 1.12515 0.90578 0.92341 1.25419 0.95335 0.95513 1.00917 1.69979 1.37292 1.23655 1.24034 0.85819 0.78101 0.78632 0.80892 1.20113 1.20513 1.21413 1.57705 1.64988 1.22503 1.38652 1.21378 1.00604 0.80560 1.02006 1.01364 0.72527 0.72599 0.72873 1.93542 1.84382 1.34187 1.87137 1.93527 1.86152 1.76213 1.42007 1.58219 1.29506 1.37055 1.59764 1.21817 0.97822 0.85850 0.94971 1.20940 1.02736 0.97529 0.91386 1.21435 0.89593 0.90961 0.94181 1.68426 1.12090 1.40984 1.03588 1.25375 0.93941 0.87588 0.94097 1.68473 1.16451 1.10795 1.29664 1.23546 0.89022 1.01833 0.87383 1.21425 1.02134 0.96627 0.99561 1.20048 0.96506 0.89819 0.88460 0.91252 0.93938 0.96081 0.92754 0.92909 0.90369 0.91044 0.87574 0.86853 0.89255 0.85928 0.76570 0.79510 0.89482 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.46 8.97 71.98 0.65 -5.81 16 2 C 0.28 12.93 2.62 44.25 0.12 13.04 16 3 H 0.03 1.50 6.91 -2.39 -0.02 1.49 16 4 C -0.51 -25.38 7.99 25.60 0.20 -25.18 16 5 H 0.06 2.86 7.33 -2.91 -0.02 2.84 16 6 C 0.03 1.47 5.30 84.65 0.45 1.92 16 7 N -0.91 -49.38 11.32 21.45 0.24 -49.13 16 8 Si 0.94 42.43 29.54 68.60 2.03 44.45 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 N -1.00 -38.25 3.12 -520.44 -1.62 -39.87 16 13 C 0.10 3.20 9.28 127.77 1.19 4.38 16 14 S 2.80 99.59 6.09 -56.49 -0.34 99.25 16 15 O -1.01 -42.89 15.62 -128.00 -2.00 -44.89 16 16 O -0.99 -35.55 15.89 -128.00 -2.03 -37.58 16 17 N -1.01 -28.22 3.31 -517.13 -1.71 -29.93 16 18 C 0.12 2.47 6.49 86.36 0.56 3.03 16 19 C -0.09 -1.92 6.15 29.87 0.18 -1.73 16 20 C 0.18 5.14 6.65 42.18 0.28 5.42 16 21 N -0.54 -15.71 10.31 -188.73 -1.95 -17.66 16 22 C 0.28 7.77 12.28 180.95 2.22 9.99 16 23 N -0.54 -16.30 10.45 -199.99 -2.09 -18.39 16 24 C 0.15 4.26 10.94 84.80 0.93 5.19 16 25 C -0.19 -5.47 5.82 -19.87 -0.12 -5.58 16 26 C 0.18 4.86 6.14 85.52 0.53 5.38 16 27 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 28 H 0.04 1.83 7.67 -2.39 -0.02 1.81 16 29 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 2.01 7.79 -2.39 -0.02 1.99 16 33 H 0.07 2.39 7.02 -2.38 -0.02 2.38 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 2.12 7.03 -2.39 -0.02 2.10 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.22 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.19 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.09 2.79 7.42 -2.39 -0.02 2.77 16 41 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -67.12 346.12 -1.25 -68.37 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.05 Total: 15.34 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 7.19 Total: 10.05 kcal Atomic # 7 Polarization: -147.85 SS G_CDS: -7.13 Total: -154.98 kcal Atomic # 8 Polarization: -78.44 SS G_CDS: -4.03 Total: -82.47 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 99.59 SS G_CDS: -0.34 Total: 99.25 kcal Total: -67.12 -1.25 -68.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882868851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.962 kcal (2) G-P(sol) polarization free energy of solvation -67.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds