Wall clock time and date at job start Fri Apr 10 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.87397 * 2 1 4 4 C 1.54325 * 109.88347 * 238.98611 * 2 1 3 5 5 H 1.08999 * 110.72010 * 336.92702 * 4 2 1 6 6 N 1.46495 * 110.72260 * 100.02459 * 4 2 1 7 7 C 1.34774 * 120.00119 * 204.99690 * 6 4 2 8 8 O 1.21284 * 119.99739 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99905 * 179.97438 * 7 6 4 10 10 C 1.50700 * 109.46831 * 180.02562 * 9 7 6 11 11 C 1.35314 * 126.04634 * 100.00738 * 10 9 7 12 12 N 1.34947 * 107.76310 * 180.02562 * 11 10 9 13 13 C 1.46506 * 126.02078 * 179.97438 * 12 11 10 14 14 N 1.40081 * 107.95118 * 0.23855 * 12 11 10 15 15 C 1.30898 * 108.20266 * 359.59322 * 14 12 11 16 16 Cl 1.73596 * 125.91611 * 180.15017 * 15 14 12 17 17 C 1.55153 * 102.93974 * 218.39212 * 4 2 1 18 18 C 1.54910 * 101.58699 * 35.49712 * 17 4 2 19 19 N 1.47024 * 109.88202 * 121.17475 * 2 1 3 20 20 C 1.36940 * 125.64785 * 298.32102 * 19 2 1 21 21 H 1.07993 * 119.99821 * 0.02562 * 20 19 2 22 22 C 1.38813 * 119.99555 * 179.97438 * 20 19 2 23 23 N 1.31613 * 120.00374 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99556 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47039 * 90.00072 * 24 22 20 26 26 H 1.48501 * 109.47100 * 210.00140 * 24 22 20 27 27 H 1.48501 * 109.47167 * 330.00337 * 24 22 20 28 28 H 1.09003 * 109.46753 * 181.01790 * 1 2 3 29 29 H 1.08994 * 109.47073 * 301.01320 * 1 2 3 30 30 H 1.09003 * 109.46642 * 61.01887 * 1 2 3 31 31 H 0.97003 * 119.99857 * 25.00458 * 6 4 2 32 32 H 1.09003 * 109.47211 * 60.00695 * 9 7 6 33 33 H 1.09003 * 109.47494 * 299.99963 * 9 7 6 34 34 H 1.07997 * 126.11570 * 0.02562 * 11 10 9 35 35 H 1.09001 * 109.47060 * 90.00410 * 13 12 11 36 36 H 1.09004 * 109.47073 * 209.99899 * 13 12 11 37 37 H 1.09000 * 109.47212 * 329.99981 * 13 12 11 38 38 H 1.09005 * 111.00787 * 153.57607 * 17 4 2 39 39 H 1.09007 * 111.00471 * 277.42650 * 17 4 2 40 40 H 1.09003 * 110.36841 * 204.15358 * 18 17 4 41 41 H 1.08999 * 110.45414 * 81.87744 * 18 17 4 42 42 H 0.97000 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 1.3041 -1.4414 -1.6221 6 7 2.4555 0.1993 -2.2872 7 6 2.4583 -0.1834 -3.5795 8 8 2.1287 -1.3116 -3.8786 9 6 2.8698 0.7910 -4.6529 10 6 2.7858 0.1198 -5.9996 11 6 1.7774 0.2498 -6.8924 12 7 2.0786 -0.5089 -7.9670 13 6 1.2587 -0.6607 -9.1716 14 7 3.3105 -1.1303 -7.7251 15 6 3.7368 -0.7487 -6.5478 16 17 5.2211 -1.2404 -5.7937 17 6 3.2876 -1.5132 -0.6945 18 6 2.8146 -1.8804 0.7342 19 7 2.0301 -0.7157 1.1829 20 6 1.8050 -0.3590 2.4858 21 1 1.2143 0.5164 2.7116 22 6 2.3354 -1.1233 3.5161 23 7 3.0548 -2.1905 3.2408 24 14 2.0278 -0.6372 5.2933 25 1 0.7872 -1.2935 5.7784 26 1 3.1760 -1.0687 6.1304 27 1 1.8756 0.8373 5.3840 28 1 -0.3633 -1.0275 0.0183 29 1 -0.3633 0.5295 0.8807 30 1 -0.3633 0.4980 -0.8990 31 1 2.7189 1.1017 -2.0480 32 1 3.8938 1.1185 -4.4731 33 1 2.2039 1.6538 -4.6352 34 1 0.8902 0.8528 -6.7674 35 1 1.5379 0.1010 -9.8996 36 1 1.4220 -1.6497 -9.6000 37 1 0.2063 -0.5466 -8.9116 38 1 3.4853 -2.4093 -1.2829 39 1 4.1655 -0.8679 -0.6615 40 1 3.6717 -2.0357 1.3895 41 1 2.1892 -2.7728 0.7108 42 1 3.4257 -2.7243 3.9608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088856473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:24 Heat of formation + Delta-G solvation = 66.104323 kcal Electronic energy + Delta-G solvation = -25326.260088 eV Core-core repulsion = 21563.037673 eV Total energy + Delta-G solvation = -3763.222414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.56175 -39.46522 -37.48536 -36.80856 -33.93606 -33.73364 -32.26058 -31.73938 -30.33201 -29.01904 -28.18562 -26.12787 -24.39079 -23.94633 -21.51260 -21.23890 -20.28980 -20.06521 -19.47300 -17.24255 -16.90763 -16.66901 -15.84061 -15.63911 -15.27896 -14.98927 -14.68525 -14.04267 -13.81685 -13.76469 -13.59603 -13.39235 -13.13463 -12.82928 -12.66071 -12.14747 -12.09520 -11.81786 -11.77636 -11.60566 -11.52372 -11.10925 -10.84927 -10.81096 -10.66327 -10.50477 -10.35974 -10.07982 -9.71194 -9.63477 -9.52975 -9.42447 -8.65438 -8.63979 -8.51067 -6.85341 -5.63640 -3.06515 1.35662 1.51833 2.28796 2.66257 2.93104 3.40313 3.44618 3.47227 3.58026 4.21356 4.48722 4.49785 4.75922 4.78879 4.95978 5.02916 5.12074 5.31698 5.38091 5.41244 5.44689 5.59612 5.67687 5.72434 5.88050 5.98249 6.16175 6.29996 6.34513 6.41345 6.59083 6.62181 6.65785 6.77703 6.90830 7.17499 7.22265 7.55537 7.64520 7.84612 7.88417 8.37130 8.55785 9.22427 9.83539 10.47747 11.39561 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002611 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.979186 B =10721.626422 C =11351.751236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.092 0.908 6 N -0.718 5.718 7 C 0.511 3.489 8 O -0.533 6.533 9 C -0.065 4.065 10 C -0.200 4.200 11 C 0.076 3.924 12 N -0.365 5.365 13 C 0.104 3.896 14 N -0.284 5.284 15 C 0.143 3.857 16 Cl 0.009 6.991 17 C -0.152 4.152 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.397 0.603 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.182 0.818 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.013 0.987 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 8.435 -23.184 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.032 3.968 5 H 0.110 0.890 6 N -0.369 5.369 7 C 0.296 3.704 8 O -0.409 6.409 9 C -0.106 4.106 10 C -0.213 4.213 11 C -0.070 4.070 12 N -0.148 5.148 13 C -0.037 4.037 14 N -0.110 5.110 15 C -0.049 4.049 16 Cl 0.037 6.963 17 C -0.192 4.192 18 C 0.028 3.972 19 N -0.321 5.321 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.231 0.769 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.199 0.801 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.031 0.969 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.738 6.765 -24.269 25.254 hybrid contribution -0.226 1.001 1.800 2.072 sum -1.964 7.765 -22.469 23.854 Atomic orbital electron populations 1.22238 0.98040 1.01347 0.99781 1.21000 0.92493 0.94787 0.87046 0.94692 1.22105 0.97528 0.90812 0.86387 0.89022 1.46062 1.68562 1.16153 1.06137 1.20486 0.77846 0.88806 0.83219 1.90705 1.47342 1.20665 1.82198 1.19950 1.04248 0.97467 0.88953 1.19213 0.96244 1.07291 0.98529 1.22280 0.99781 0.97441 0.87476 1.48160 1.15828 1.35540 1.15315 1.21932 0.93474 1.04439 0.83887 1.77345 0.96802 1.19984 1.16824 1.22486 0.91597 0.97824 0.93007 1.98403 1.28620 1.90639 1.78674 1.23381 0.96843 0.99360 0.99628 1.21939 0.97310 0.88341 0.89639 1.44493 1.59264 1.28229 1.00069 1.19016 1.27099 1.08130 0.80554 0.90494 1.24789 1.00409 0.97414 0.98023 1.69800 1.39109 1.17836 1.30156 0.86092 0.77231 0.77688 0.84576 1.21685 1.21693 1.20735 0.93020 0.92821 0.94399 0.76903 0.88005 0.88025 0.80097 0.90444 0.89022 0.89033 0.92103 0.92000 0.87423 0.96861 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.13 37.16 0.34 -2.51 16 2 C 0.15 3.08 3.48 -66.95 -0.23 2.84 16 3 H 0.04 0.67 7.71 -51.93 -0.40 0.27 16 4 C 0.14 2.47 2.85 -66.10 -0.19 2.29 16 5 H 0.09 1.82 7.25 -51.93 -0.38 1.44 16 6 N -0.72 -10.17 5.18 -52.04 -0.27 -10.44 16 7 C 0.51 7.30 7.82 -10.99 -0.09 7.22 16 8 O -0.53 -9.92 15.68 5.55 0.09 -9.84 16 9 C -0.06 -0.65 6.04 -29.04 -0.18 -0.83 16 10 C -0.20 -2.34 4.60 -105.01 -0.48 -2.83 16 11 C 0.08 0.72 11.40 -17.22 -0.20 0.52 16 12 N -0.37 -3.67 4.01 -68.16 -0.27 -3.95 16 13 C 0.10 0.52 11.47 59.85 0.69 1.21 16 14 N -0.28 -3.85 12.58 32.95 0.41 -3.44 16 15 C 0.14 1.94 7.84 -17.30 -0.14 1.81 16 16 Cl 0.01 0.12 29.16 -51.86 -1.51 -1.39 16 17 C -0.15 -3.06 6.77 -24.58 -0.17 -3.23 16 18 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 19 N -0.60 -14.80 3.13 -162.57 -0.51 -15.31 16 20 C -0.22 -5.95 9.89 -15.06 -0.15 -6.10 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -26.74 10.09 55.49 0.56 -26.19 16 24 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.40 4.52 8.37 -40.82 -0.34 4.18 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -35.09 366.21 -7.94 -43.03 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.04 Total: 1.42 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.90 Total: 3.73 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.08 Total: -59.32 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.51 Total: -1.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.09 -7.94 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088856473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.132 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds