Wall clock time and date at job start Fri Apr 10 2020 18:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.87397 * 2 1 4 4 C 1.54325 * 109.88347 * 238.98611 * 2 1 3 5 5 H 1.08999 * 110.72010 * 336.92702 * 4 2 1 6 6 N 1.46495 * 110.72260 * 100.02459 * 4 2 1 7 7 C 1.34774 * 120.00119 * 204.99690 * 6 4 2 8 8 O 1.21284 * 119.99739 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99905 * 179.97438 * 7 6 4 10 10 C 1.50700 * 109.46831 * 180.02562 * 9 7 6 11 11 C 1.35314 * 126.04634 * 100.00738 * 10 9 7 12 12 N 1.34947 * 107.76310 * 180.02562 * 11 10 9 13 13 C 1.46506 * 126.02078 * 179.97438 * 12 11 10 14 14 N 1.40081 * 107.95118 * 0.23855 * 12 11 10 15 15 C 1.30898 * 108.20266 * 359.59322 * 14 12 11 16 16 Cl 1.73596 * 125.91611 * 180.15017 * 15 14 12 17 17 C 1.55153 * 102.93974 * 218.39212 * 4 2 1 18 18 C 1.54910 * 101.58699 * 35.49712 * 17 4 2 19 19 N 1.47024 * 109.88202 * 121.17475 * 2 1 3 20 20 C 1.36940 * 125.64785 * 298.32102 * 19 2 1 21 21 H 1.07993 * 119.99821 * 0.02562 * 20 19 2 22 22 C 1.38813 * 119.99555 * 179.97438 * 20 19 2 23 23 N 1.31613 * 120.00374 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99556 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47039 * 90.00072 * 24 22 20 26 26 H 1.48501 * 109.47100 * 210.00140 * 24 22 20 27 27 H 1.48501 * 109.47167 * 330.00337 * 24 22 20 28 28 H 1.09003 * 109.46753 * 181.01790 * 1 2 3 29 29 H 1.08994 * 109.47073 * 301.01320 * 1 2 3 30 30 H 1.09003 * 109.46642 * 61.01887 * 1 2 3 31 31 H 0.97003 * 119.99857 * 25.00458 * 6 4 2 32 32 H 1.09003 * 109.47211 * 60.00695 * 9 7 6 33 33 H 1.09003 * 109.47494 * 299.99963 * 9 7 6 34 34 H 1.07997 * 126.11570 * 0.02562 * 11 10 9 35 35 H 1.09001 * 109.47060 * 90.00410 * 13 12 11 36 36 H 1.09004 * 109.47073 * 209.99899 * 13 12 11 37 37 H 1.09000 * 109.47212 * 329.99981 * 13 12 11 38 38 H 1.09005 * 111.00787 * 153.57607 * 17 4 2 39 39 H 1.09007 * 111.00471 * 277.42650 * 17 4 2 40 40 H 1.09003 * 110.36841 * 204.15358 * 18 17 4 41 41 H 1.08999 * 110.45414 * 81.87744 * 18 17 4 42 42 H 0.97000 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 1.3041 -1.4414 -1.6221 6 7 2.4555 0.1993 -2.2872 7 6 2.4583 -0.1834 -3.5795 8 8 2.1287 -1.3116 -3.8786 9 6 2.8698 0.7910 -4.6529 10 6 2.7858 0.1198 -5.9996 11 6 1.7774 0.2498 -6.8924 12 7 2.0786 -0.5089 -7.9670 13 6 1.2587 -0.6607 -9.1716 14 7 3.3105 -1.1303 -7.7251 15 6 3.7368 -0.7487 -6.5478 16 17 5.2211 -1.2404 -5.7937 17 6 3.2876 -1.5132 -0.6945 18 6 2.8146 -1.8804 0.7342 19 7 2.0301 -0.7157 1.1829 20 6 1.8050 -0.3590 2.4858 21 1 1.2143 0.5164 2.7116 22 6 2.3354 -1.1233 3.5161 23 7 3.0548 -2.1905 3.2408 24 14 2.0278 -0.6372 5.2933 25 1 0.7872 -1.2935 5.7784 26 1 3.1760 -1.0687 6.1304 27 1 1.8756 0.8373 5.3840 28 1 -0.3633 -1.0275 0.0183 29 1 -0.3633 0.5295 0.8807 30 1 -0.3633 0.4980 -0.8990 31 1 2.7189 1.1017 -2.0480 32 1 3.8938 1.1185 -4.4731 33 1 2.2039 1.6538 -4.6352 34 1 0.8902 0.8528 -6.7674 35 1 1.5379 0.1010 -9.8996 36 1 1.4220 -1.6497 -9.6000 37 1 0.2063 -0.5466 -8.9116 38 1 3.4853 -2.4093 -1.2829 39 1 4.1655 -0.8679 -0.6615 40 1 3.6717 -2.0357 1.3895 41 1 2.1892 -2.7728 0.7108 42 1 3.4257 -2.7243 3.9608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088856473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:23 Heat of formation + Delta-G solvation = 41.805600 kcal Electronic energy + Delta-G solvation = -25327.313759 eV Core-core repulsion = 21563.037673 eV Total energy + Delta-G solvation = -3764.276086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33695 -40.75135 -39.05853 -37.74282 -35.49279 -34.47259 -33.78805 -32.80638 -32.00687 -30.54552 -29.19099 -27.04886 -26.03318 -25.61761 -22.42953 -22.25357 -21.77362 -21.45025 -20.82530 -18.68485 -18.07659 -17.86673 -17.18940 -16.58230 -16.44497 -16.13845 -15.91546 -15.70612 -15.36593 -14.74791 -14.57714 -14.33856 -14.21759 -13.99504 -13.91071 -13.69088 -13.25651 -13.18500 -12.92026 -12.80245 -12.72064 -12.57077 -12.56503 -12.48597 -12.18745 -12.03695 -11.94196 -11.54077 -11.52483 -11.39024 -10.80430 -10.70598 -10.27379 -9.87554 -9.42661 -8.87107 -7.72296 -5.17292 0.53706 0.76956 1.42481 1.49595 1.51169 1.59672 1.84431 2.00369 2.39281 2.57522 3.38286 3.57779 3.63241 3.89588 3.93739 4.01549 4.08132 4.26244 4.33109 4.40286 4.46912 4.54303 4.62214 4.67505 4.72109 4.74080 4.75006 4.85747 5.00114 5.00843 5.10295 5.18496 5.22813 5.43354 5.52849 5.62714 5.73920 5.82781 6.02338 6.32978 6.42723 6.76580 7.13468 7.47196 7.82035 8.45939 9.29701 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002611 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.979186 B =10721.626422 C =11351.751236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.056 0.944 4 C 0.155 3.845 5 H 0.075 0.925 6 N -0.707 5.707 7 C 0.512 3.488 8 O -0.579 6.579 9 C -0.054 4.054 10 C -0.227 4.227 11 C 0.091 3.909 12 N -0.363 5.363 13 C 0.092 3.908 14 N -0.327 5.327 15 C 0.119 3.881 16 Cl -0.006 7.006 17 C -0.139 4.139 18 C 0.158 3.842 19 N -0.614 5.614 20 C -0.224 4.224 21 H 0.087 0.913 22 C -0.072 4.072 23 N -0.953 5.953 24 Si 0.978 3.022 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.265 1.265 28 H 0.030 0.970 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.415 0.585 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.075 0.925 41 H -0.020 1.020 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 11.580 -24.693 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.049 3.951 5 H 0.093 0.907 6 N -0.359 5.359 7 C 0.300 3.700 8 O -0.458 6.458 9 C -0.094 4.094 10 C -0.240 4.240 11 C -0.056 4.056 12 N -0.146 5.146 13 C -0.047 4.047 14 N -0.153 5.153 15 C -0.071 4.071 16 Cl 0.021 6.979 17 C -0.178 4.178 18 C 0.033 3.967 19 N -0.339 5.339 20 C -0.353 4.353 21 H 0.105 0.895 22 C -0.264 4.264 23 N -0.603 5.603 24 Si 0.807 3.193 25 H -0.218 1.218 26 H -0.224 1.224 27 H -0.190 1.190 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.252 0.748 32 H 0.133 0.867 33 H 0.164 0.836 34 H 0.244 0.756 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.093 0.907 41 H -0.002 1.002 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.412 9.969 -25.825 27.891 hybrid contribution 0.213 0.018 2.128 2.139 sum -3.199 9.987 -23.696 25.913 Atomic orbital electron populations 1.22120 0.96614 1.00464 1.01288 1.21228 0.93470 0.95187 0.85727 0.92635 1.21608 0.95718 0.90949 0.86807 0.90667 1.45862 1.68424 1.16225 1.05417 1.21286 0.76351 0.88857 0.83525 1.90699 1.49304 1.22960 1.82808 1.19988 1.05956 0.97155 0.86305 1.19520 0.96636 1.08043 0.99768 1.23005 1.00091 0.96342 0.86205 1.48605 1.14846 1.34542 1.16599 1.22349 0.94422 1.04975 0.82913 1.77238 0.98973 1.21676 1.17427 1.22742 0.91829 0.98887 0.93632 1.98382 1.29662 1.90899 1.78922 1.23177 0.98071 0.99837 0.96763 1.21635 0.95590 0.87764 0.91756 1.44740 1.59717 1.28507 1.00981 1.19412 1.26127 1.07991 0.81740 0.89501 1.25628 1.00966 0.97791 1.01999 1.70059 1.40532 1.19060 1.30676 0.85073 0.76406 0.78102 0.79731 1.21832 1.22430 1.18954 0.95033 0.93432 0.90756 0.74797 0.86698 0.83612 0.75644 0.88421 0.89504 0.85991 0.92337 0.91096 0.90684 1.00155 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.13 71.98 0.66 -4.41 16 2 C 0.15 5.73 3.48 45.34 0.16 5.89 16 3 H 0.06 1.93 7.71 -2.39 -0.02 1.91 16 4 C 0.16 5.45 2.85 46.18 0.13 5.58 16 5 H 0.08 2.95 7.25 -2.39 -0.02 2.93 16 6 N -0.71 -18.01 5.18 -436.94 -2.26 -20.27 16 7 C 0.51 13.33 7.82 87.66 0.69 14.01 16 8 O -0.58 -20.89 15.68 -3.04 -0.05 -20.94 16 9 C -0.05 -0.88 6.04 29.10 0.18 -0.71 16 10 C -0.23 -4.73 4.60 -20.12 -0.09 -4.82 16 11 C 0.09 1.37 11.40 83.54 0.95 2.32 16 12 N -0.36 -6.43 4.01 -369.55 -1.48 -7.91 16 13 C 0.09 0.67 11.47 127.77 1.47 2.13 16 14 N -0.33 -8.65 12.58 -49.68 -0.62 -9.28 16 15 C 0.12 3.17 7.84 85.25 0.67 3.84 16 16 Cl -0.01 -0.17 29.16 -2.72 -0.08 -0.25 16 17 C -0.14 -5.61 6.77 31.99 0.22 -5.40 16 18 C 0.16 8.07 5.89 86.86 0.51 8.58 16 19 N -0.61 -30.67 3.13 -668.25 -2.09 -32.75 16 20 C -0.22 -12.12 9.89 84.03 0.83 -11.28 16 21 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 23 N -0.95 -57.36 10.09 21.65 0.22 -57.14 16 24 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 27 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.70 8.04 -2.39 -0.02 1.68 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.41 7.78 8.37 -92.71 -0.78 7.00 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.23 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 40 H 0.08 4.34 5.87 -2.39 -0.01 4.32 16 41 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -80.54 366.21 2.75 -77.79 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.26 Total: 11.23 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.83 Total: 12.16 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -6.24 Total: -127.36 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -80.54 2.75 -77.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088856473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.594 kcal (2) G-P(sol) polarization free energy of solvation -80.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds