Wall clock time and date at job start Fri Apr 10 2020 18:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47366 * 270.00247 * 3 2 1 5 5 H 1.48496 * 109.46821 * 30.00600 * 3 2 1 6 6 H 1.48500 * 109.46857 * 150.00237 * 3 2 1 7 7 C 1.38815 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00181 * 197.36357 * 7 2 1 9 9 N 1.36933 * 119.99439 * 17.35761 * 7 2 1 10 10 C 1.46929 * 120.63209 * 207.66718 * 9 7 2 11 11 C 1.53191 * 108.77832 * 233.63771 * 10 9 7 12 12 C 1.53043 * 109.30759 * 305.35884 * 11 10 9 13 13 H 1.08998 * 109.46187 * 301.34881 * 12 11 10 14 14 N 1.46506 * 109.44715 * 181.38077 * 12 11 10 15 15 C 1.34766 * 120.00181 * 84.96668 * 14 12 11 16 16 O 1.21286 * 119.99985 * 0.02562 * 15 14 12 17 17 C 1.50696 * 120.00389 * 180.02562 * 15 14 12 18 18 N 1.46498 * 109.47608 * 180.02562 * 17 15 14 19 19 C 1.47313 * 126.68809 * 269.71156 * 18 17 15 20 20 C 1.51586 * 103.59611 * 179.97438 * 19 18 17 21 21 O 1.21228 * 127.16021 * 180.15245 * 20 19 18 22 22 N 1.34766 * 105.68067 * 0.33144 * 20 19 18 23 23 C 1.33799 * 111.64672 * 359.78187 * 22 20 19 24 24 O 1.21531 * 123.77231 * 179.97438 * 23 22 20 25 25 C 1.53036 * 109.53896 * 61.36872 * 12 11 10 26 26 H 1.09003 * 109.50426 * 178.64638 * 25 12 11 27 27 O 1.42908 * 109.50085 * 58.58480 * 25 12 11 28 28 C 1.46924 * 120.63373 * 27.69339 * 9 7 2 29 29 H 0.96998 * 119.99469 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58146 * 353.41688 * 10 9 7 31 31 H 1.08992 * 109.58856 * 113.69915 * 10 9 7 32 32 H 1.08997 * 109.50056 * 185.41088 * 11 10 9 33 33 H 1.08999 * 109.50187 * 65.30760 * 11 10 9 34 34 H 0.97001 * 119.99670 * 264.96324 * 14 12 11 35 35 H 1.09001 * 109.47125 * 300.00167 * 17 15 14 36 36 H 1.09007 * 109.47163 * 59.99946 * 17 15 14 37 37 H 1.09010 * 110.59959 * 298.56045 * 19 18 17 38 38 H 1.09001 * 110.60200 * 61.50471 * 19 18 17 39 39 H 0.96996 * 124.17980 * 179.81888 * 22 20 19 40 40 H 0.96694 * 114.00334 * 180.02562 * 27 25 12 41 41 H 1.08997 * 109.58729 * 6.57814 * 28 9 7 42 42 H 1.09008 * 109.70558 * 246.22221 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3724 -2.3608 -0.3549 10 6 1.8195 -3.6548 0.1784 11 6 2.0752 -4.6089 -0.9925 12 6 0.8197 -4.6884 -1.8640 13 1 -0.0194 -5.0357 -1.2612 14 7 1.0497 -5.6255 -2.9664 15 6 0.8492 -6.9453 -2.7819 16 8 0.4781 -7.3573 -1.7032 17 6 1.0863 -7.9093 -3.9156 18 7 0.7999 -9.2735 -3.4648 19 6 1.7537 -10.2188 -2.8591 20 6 0.9144 -11.4537 -2.5980 21 8 1.2812 -12.4968 -2.1010 22 7 -0.3236 -11.1522 -3.0368 23 6 -0.3836 -9.9096 -3.5295 24 8 -1.3943 -9.4115 -3.9850 25 6 0.5015 -3.3029 -2.4306 26 1 -0.3788 -3.3647 -3.0705 27 8 1.6140 -2.8328 -3.1944 28 6 0.2280 -2.3338 -1.2760 29 1 -0.4849 0.8401 0.0004 30 1 2.7401 -3.5177 0.7457 31 1 1.0482 -4.0685 0.8280 32 1 2.3147 -5.6005 -0.6083 33 1 2.9090 -4.2381 -1.5886 34 1 1.3461 -5.2959 -3.8292 35 1 0.4312 -7.6576 -4.7496 36 1 2.1257 -7.8433 -4.2374 37 1 2.5635 -10.4441 -3.5532 38 1 2.1482 -9.8197 -1.9247 39 1 -1.0782 -11.7605 -2.9996 40 1 1.4820 -1.9577 -3.5841 41 1 0.0985 -1.3252 -1.6683 42 1 -0.6756 -2.6397 -0.7486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090655814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:37 Heat of formation + Delta-G solvation = -92.687334 kcal Electronic energy + Delta-G solvation = -28310.186459 eV Core-core repulsion = 24099.369157 eV Total energy + Delta-G solvation = -4210.817302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54967 -39.90060 -38.91517 -37.99924 -36.44768 -34.84545 -34.81192 -34.35394 -32.20118 -30.25770 -29.21883 -28.93961 -27.19965 -25.04951 -22.84186 -22.55056 -22.19066 -21.48388 -20.25916 -19.45887 -18.55324 -17.85601 -17.30953 -17.01642 -16.61545 -16.31365 -16.04177 -15.61919 -15.21650 -15.07430 -14.76450 -14.53332 -14.36231 -14.11072 -13.89660 -13.79539 -13.40371 -13.30918 -12.91373 -12.46989 -12.14300 -12.04582 -11.36451 -11.30834 -11.20867 -10.85767 -10.70001 -10.64611 -10.62107 -10.53407 -10.36346 -10.14721 -10.09129 -9.76052 -9.32455 -9.14746 -8.79761 -8.54333 -6.73517 -5.85540 -3.26466 1.26386 1.77588 2.56725 2.62822 2.68087 3.30084 3.34323 3.41306 3.42618 3.68666 4.33437 4.44148 4.55447 4.66540 4.81419 4.83579 4.87901 5.24191 5.27323 5.35154 5.41289 5.51133 5.66305 5.86981 5.88718 5.99041 6.15367 6.19687 6.39125 6.48472 6.64591 6.73129 6.76821 6.92312 6.99159 7.11313 7.38763 7.58479 7.74189 7.77198 8.17356 8.25208 8.38325 9.13601 9.76621 10.33230 11.23256 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032050 B = 0.002524 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.422906 B =11089.590465 C =11340.175959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.147 3.853 11 C -0.134 4.134 12 C 0.163 3.837 13 H 0.090 0.910 14 N -0.714 5.714 15 C 0.487 3.513 16 O -0.534 6.534 17 C 0.133 3.867 18 N -0.607 5.607 19 C 0.063 3.937 20 C 0.530 3.470 21 O -0.473 6.473 22 N -0.679 5.679 23 C 0.708 3.292 24 O -0.539 6.539 25 C 0.073 3.927 26 H 0.044 0.956 27 O -0.560 6.560 28 C 0.145 3.855 29 H 0.254 0.746 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.403 0.597 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.432 0.568 40 H 0.376 0.624 41 H 0.096 0.904 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 -17.304 -11.682 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.175 4.175 12 C 0.059 3.941 13 H 0.108 0.892 14 N -0.365 5.365 15 C 0.271 3.729 16 O -0.410 6.410 17 C 0.007 3.993 18 N -0.346 5.346 19 C -0.062 4.062 20 C 0.317 3.683 21 O -0.343 6.343 22 N -0.349 5.349 23 C 0.408 3.592 24 O -0.412 6.412 25 C 0.012 3.988 26 H 0.062 0.938 27 O -0.366 6.366 28 C 0.018 3.982 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.237 0.763 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.275 0.725 40 H 0.223 0.777 41 H 0.114 0.886 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.099 -18.127 -10.699 21.275 hybrid contribution -0.120 1.377 -0.451 1.454 sum 2.979 -16.749 -11.150 20.340 Atomic orbital electron populations 1.70019 1.05223 1.25558 1.54379 1.25026 0.95292 0.98416 1.01154 0.86260 0.79114 0.83574 0.77655 1.21483 1.21859 1.20467 1.19193 0.92740 0.84728 1.40687 0.91601 1.43879 1.35402 1.01591 1.49610 1.20889 0.97904 0.86470 0.92685 1.22286 0.97506 0.99224 0.98445 1.21031 0.99300 0.86460 0.87279 0.89225 1.46172 1.68153 1.05957 1.16228 1.21041 0.78178 0.83630 0.90062 1.90730 1.45807 1.77825 1.26678 1.21192 1.04594 0.77394 0.96081 1.46914 1.09510 1.13554 1.64575 1.22562 0.93814 0.87160 1.02710 1.20782 0.82954 0.88732 0.75878 1.90862 1.76107 1.26901 1.40463 1.44305 1.14769 1.16606 1.59177 1.15742 0.84204 0.80566 0.78649 1.91036 1.31639 1.68732 1.49760 1.22834 0.87688 0.93918 0.94376 0.93793 1.86323 1.41935 1.38245 1.70086 1.21440 0.89658 0.98541 0.88597 0.93598 0.92447 0.96291 0.93009 0.91138 0.76266 0.86178 0.86231 0.85639 0.85470 0.72535 0.77725 0.88573 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.30 11.19 55.49 0.62 -24.67 16 2 C 0.00 -0.02 4.91 -17.43 -0.09 -0.11 16 3 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.24 -6.44 9.59 -15.06 -0.14 -6.59 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.58 -13.95 2.94 -172.32 -0.51 -14.45 16 10 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 11 C -0.13 -2.37 5.51 -26.61 -0.15 -2.52 16 12 C 0.16 2.69 2.20 -67.89 -0.15 2.54 16 13 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 14 N -0.71 -9.01 5.05 -53.77 -0.27 -9.28 16 15 C 0.49 6.11 7.86 -10.99 -0.09 6.02 16 16 O -0.53 -9.01 16.09 5.55 0.09 -8.92 16 17 C 0.13 1.03 6.63 -5.20 -0.03 0.99 16 18 N -0.61 -5.36 2.51 -181.39 -0.45 -5.81 16 19 C 0.06 0.40 7.66 -4.31 -0.03 0.37 16 20 C 0.53 4.48 8.81 -10.55 -0.09 4.39 16 21 O -0.47 -5.28 18.02 5.60 0.10 -5.18 16 22 N -0.68 -5.80 5.70 -15.79 -0.09 -5.89 16 23 C 0.71 7.83 8.68 -88.02 -0.76 7.07 16 24 O -0.54 -7.95 17.71 5.34 0.09 -7.86 16 25 C 0.07 1.25 3.38 -26.61 -0.09 1.16 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 O -0.56 -9.12 12.09 -35.23 -0.43 -9.55 16 28 C 0.14 3.20 4.95 -3.71 -0.02 3.18 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.30 7.61 -51.93 -0.40 0.90 16 34 H 0.40 4.12 8.25 -40.82 -0.34 3.78 16 35 H 0.12 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 38 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.43 2.89 8.96 -40.82 -0.37 2.53 16 40 H 0.38 5.35 9.08 45.56 0.41 5.76 16 41 H 0.10 2.34 6.03 -51.93 -0.31 2.02 16 42 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -35.92 355.58 -6.91 -42.83 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.73 Total: 7.89 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: -1.67 Total: 19.58 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.70 Total: -60.12 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.14 Total: -31.51 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.92 -6.91 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090655814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.856 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds