Wall clock time and date at job start Fri Apr 10 2020 18:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00239 * 2 1 4 4 H 1.48494 * 109.46850 * 270.00201 * 3 2 1 5 5 H 1.48497 * 109.46780 * 30.00315 * 3 2 1 6 6 H 1.48501 * 109.46938 * 150.00231 * 3 2 1 7 7 C 1.38815 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00313 * 197.36686 * 7 2 1 9 9 N 1.36941 * 119.99669 * 17.36669 * 7 2 1 10 10 C 1.46922 * 120.62814 * 207.68826 * 9 7 2 11 11 C 1.53189 * 108.77726 * 233.58706 * 10 9 7 12 12 C 1.53045 * 109.30978 * 305.36384 * 11 10 9 13 13 H 1.09004 * 109.46001 * 301.34323 * 12 11 10 14 14 N 1.46497 * 109.46135 * 181.37266 * 12 11 10 15 15 C 1.34769 * 120.00253 * 84.97338 * 14 12 11 16 16 O 1.21277 * 120.00369 * 359.97438 * 15 14 12 17 17 C 1.50704 * 120.00134 * 180.02562 * 15 14 12 18 18 N 1.46500 * 109.47199 * 179.97438 * 17 15 14 19 19 C 1.47310 * 126.68837 * 269.70980 * 18 17 15 20 20 C 1.51592 * 103.59211 * 179.97438 * 19 18 17 21 21 O 1.21231 * 127.15809 * 180.02562 * 20 19 18 22 22 N 1.34766 * 105.68250 * 0.33174 * 20 19 18 23 23 C 1.33793 * 111.64518 * 359.78248 * 22 20 19 24 24 O 1.21536 * 123.76851 * 180.02562 * 23 22 20 25 25 C 1.53042 * 109.52552 * 61.35512 * 12 11 10 26 26 H 1.09005 * 109.49738 * 58.59883 * 25 12 11 27 27 O 1.42906 * 109.49773 * 178.68917 * 25 12 11 28 28 C 1.46918 * 120.63240 * 27.66248 * 9 7 2 29 29 H 0.97000 * 119.99729 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58876 * 113.79733 * 10 9 7 31 31 H 1.09004 * 109.58879 * 353.37005 * 10 9 7 32 32 H 1.08995 * 109.50102 * 185.41749 * 11 10 9 33 33 H 1.08999 * 109.52516 * 65.32647 * 11 10 9 34 34 H 0.97001 * 120.00032 * 264.97295 * 14 12 11 35 35 H 1.08999 * 109.47139 * 299.99657 * 17 15 14 36 36 H 1.09005 * 109.47449 * 59.99903 * 17 15 14 37 37 H 1.08998 * 110.60386 * 298.55910 * 19 18 17 38 38 H 1.09004 * 110.60186 * 61.51303 * 19 18 17 39 39 H 0.96999 * 124.17673 * 179.74414 * 22 20 19 40 40 H 0.96694 * 113.99780 * 180.02562 * 27 25 12 41 41 H 1.09010 * 109.59045 * 246.20203 * 28 9 7 42 42 H 1.09001 * 109.59041 * 6.62563 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3723 -2.3609 -0.3551 10 6 1.8191 -3.6548 0.1786 11 6 2.0741 -4.6094 -0.9920 12 6 0.8183 -4.6887 -1.8632 13 1 -0.0208 -5.0355 -1.2600 14 7 1.0473 -5.6261 -2.9655 15 6 0.8463 -6.9458 -2.7806 16 8 0.4762 -7.3576 -1.7016 17 6 1.0824 -7.9101 -3.9144 18 7 0.7966 -9.2742 -3.4629 19 6 1.7511 -10.2191 -2.8578 20 6 0.9120 -11.4541 -2.5955 21 8 1.2799 -12.4978 -2.1005 22 7 -0.3265 -11.1527 -3.0332 23 6 -0.3870 -9.9104 -3.5262 24 8 -1.3984 -9.4122 -3.9801 25 6 0.5006 -3.3030 -2.4298 26 1 1.3492 -2.9450 -3.0129 27 8 -0.6543 -3.3836 -3.2677 28 6 0.2278 -2.3337 -1.2758 29 1 -0.4850 0.8401 0.0004 30 1 1.0468 -4.0692 0.8266 31 1 2.7400 -3.5179 0.7456 32 1 2.3132 -5.6009 -0.6075 33 1 2.9080 -4.2397 -1.5886 34 1 1.3437 -5.2969 -3.8284 35 1 0.4270 -7.6582 -4.7481 36 1 2.1217 -7.8447 -4.2366 37 1 2.5602 -10.4447 -3.5525 38 1 2.1463 -9.8198 -1.9237 39 1 -1.0807 -11.7616 -2.9960 40 1 -0.9137 -2.5398 -3.6621 41 1 -0.6745 -2.6405 -0.7465 42 1 0.0984 -1.3252 -1.6684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090655815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:39 Heat of formation + Delta-G solvation = -127.360901 kcal Electronic energy + Delta-G solvation = -28228.255465 eV Core-core repulsion = 24015.934605 eV Total energy + Delta-G solvation = -4212.320861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.27053 -41.03239 -39.78416 -39.31075 -37.30212 -36.87939 -35.84734 -35.43405 -33.96467 -31.59704 -30.60713 -30.01224 -28.04485 -26.77652 -24.26855 -23.62937 -23.30748 -22.60553 -21.40564 -20.97163 -19.32315 -19.00892 -18.48918 -18.09966 -17.82236 -17.49323 -17.32361 -16.87582 -16.68410 -16.15866 -15.79606 -15.60858 -15.53256 -15.28088 -15.13671 -14.94487 -14.79281 -14.44254 -14.00271 -13.84410 -13.60850 -13.34624 -13.09160 -13.01803 -12.65999 -12.52681 -12.17876 -12.07578 -11.99407 -11.87183 -11.50329 -11.45436 -11.43387 -11.18733 -10.93465 -10.60245 -10.03250 -10.01133 -8.76989 -7.90672 -5.38202 0.56016 1.10171 1.49432 1.50628 1.59804 1.64019 1.87656 1.99975 2.36229 2.49954 3.05959 3.13169 3.27179 3.64115 3.75434 3.79346 3.96115 4.09118 4.28557 4.33066 4.36029 4.40759 4.43845 4.47505 4.69115 4.73873 4.90944 4.96332 5.03344 5.05958 5.16548 5.20072 5.34990 5.50860 5.57082 5.64190 5.92598 6.31713 6.33156 6.60839 6.83461 6.99726 7.09949 7.30365 7.77815 8.30472 9.15903 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029748 B = 0.002559 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.012262 B =10939.521834 C =11408.430978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.139 3.861 11 C -0.118 4.118 12 C 0.171 3.829 13 H 0.046 0.954 14 N -0.699 5.699 15 C 0.485 3.515 16 O -0.584 6.584 17 C 0.139 3.861 18 N -0.604 5.604 19 C 0.070 3.930 20 C 0.532 3.468 21 O -0.503 6.503 22 N -0.674 5.674 23 C 0.701 3.299 24 O -0.584 6.584 25 C 0.092 3.908 26 H 0.073 0.927 27 O -0.575 6.575 28 C 0.155 3.845 29 H 0.251 0.749 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.417 0.583 35 H 0.131 0.869 36 H 0.179 0.821 37 H 0.174 0.826 38 H 0.133 0.867 39 H 0.437 0.563 40 H 0.392 0.608 41 H -0.012 1.012 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 -17.470 -13.553 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.394 4.394 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.013 3.987 11 C -0.158 4.158 12 C 0.065 3.935 13 H 0.064 0.936 14 N -0.351 5.351 15 C 0.271 3.729 16 O -0.463 6.463 17 C 0.015 3.985 18 N -0.341 5.341 19 C -0.055 4.055 20 C 0.321 3.679 21 O -0.375 6.375 22 N -0.344 5.344 23 C 0.401 3.599 24 O -0.461 6.461 25 C 0.031 3.969 26 H 0.090 0.910 27 O -0.382 6.382 28 C 0.028 3.972 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.149 0.851 36 H 0.196 0.804 37 H 0.191 0.809 38 H 0.151 0.849 39 H 0.280 0.720 40 H 0.241 0.759 41 H 0.006 0.994 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.408 -18.373 -12.632 23.495 hybrid contribution -0.820 1.620 0.277 1.836 sum 6.588 -16.754 -12.354 21.834 Atomic orbital electron populations 1.70200 1.06824 1.26064 1.55183 1.25861 0.95994 1.01730 1.00953 0.85218 0.77992 0.79144 0.77783 1.20623 1.22705 1.19242 1.19581 0.93256 0.85540 1.41016 0.90716 1.44276 1.35593 1.02455 1.50598 1.21068 0.97671 0.85757 0.94185 1.22166 0.96917 0.99568 0.97191 1.20595 0.97357 0.87305 0.88254 0.93618 1.45797 1.68130 1.05735 1.15448 1.21954 0.76461 0.83778 0.90680 1.90717 1.47790 1.78587 1.29228 1.21459 1.08175 0.75271 0.93617 1.47097 1.09122 1.14070 1.63830 1.22817 0.93599 0.85012 1.04032 1.21143 0.82870 0.89059 0.74870 1.90855 1.76441 1.28293 1.41920 1.44292 1.15417 1.16093 1.58578 1.16004 0.84389 0.81065 0.78395 1.91012 1.33354 1.69796 1.51936 1.22563 0.88029 0.94582 0.91724 0.90954 1.86406 1.47972 1.37935 1.65865 1.21226 0.88175 0.98246 0.89524 0.93986 0.97974 0.91390 0.90756 0.90003 0.74561 0.85077 0.80417 0.80869 0.84925 0.72027 0.75910 0.99354 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.79 11.19 21.65 0.24 -53.55 16 2 C -0.05 -2.66 4.91 84.86 0.42 -2.25 16 3 Si 0.97 42.63 29.59 68.60 2.03 44.66 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.26 -13.76 9.59 84.03 0.81 -12.95 16 8 H 0.08 3.74 7.89 -2.91 -0.02 3.72 16 9 N -0.60 -29.05 2.99 -699.16 -2.09 -31.14 16 10 C 0.14 5.65 6.51 86.36 0.56 6.21 16 11 C -0.12 -3.74 5.65 30.67 0.17 -3.57 16 12 C 0.17 5.58 2.12 45.02 0.10 5.68 16 13 H 0.05 1.90 7.58 -2.39 -0.02 1.89 16 14 N -0.70 -16.06 4.92 -442.40 -2.18 -18.24 16 15 C 0.49 11.34 7.86 87.66 0.69 12.03 16 16 O -0.58 -19.80 16.09 -3.02 -0.05 -19.84 16 17 C 0.14 1.65 6.63 85.63 0.57 2.22 16 18 N -0.60 -9.14 2.51 -846.21 -2.12 -11.26 16 19 C 0.07 0.64 7.66 85.76 0.66 1.30 16 20 C 0.53 8.24 8.81 87.94 0.77 9.01 16 21 O -0.50 -10.73 18.02 -2.88 -0.05 -10.78 16 22 N -0.67 -11.34 5.70 -441.12 -2.52 -13.86 16 23 C 0.70 15.25 8.68 179.44 1.56 16.81 16 24 O -0.58 -17.90 17.71 -3.83 -0.07 -17.97 16 25 C 0.09 3.17 3.14 30.66 0.10 3.26 16 26 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 27 O -0.58 -18.28 13.16 -148.98 -1.96 -20.24 16 28 C 0.16 7.18 4.93 86.35 0.43 7.60 16 29 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 31 H 0.07 2.62 7.93 -2.38 -0.02 2.60 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.42 6.52 8.60 -92.71 -0.80 5.73 16 35 H 0.13 1.43 8.03 -2.39 -0.02 1.41 16 36 H 0.18 0.06 8.14 -2.38 -0.02 0.04 16 37 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.44 6.08 8.96 -92.71 -0.83 5.25 16 40 H 0.39 9.85 9.08 -74.06 -0.67 9.17 16 41 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 42 H 0.07 3.57 6.04 -2.39 -0.01 3.55 16 Total: -1.00 -84.26 357.26 -3.14 -87.40 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -1.20 Total: 19.47 kcal Atomic # 6 Polarization: 38.53 SS G_CDS: 6.82 Total: 45.36 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -8.66 Total: -128.05 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -2.13 Total: -68.84 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -84.26 -3.14 -87.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090655815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.962 kcal (2) G-P(sol) polarization free energy of solvation -84.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds