Wall clock time and date at job start Fri Apr 10 2020 18:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48498 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46875 * 300.00009 * 3 2 1 6 6 H 1.48497 * 109.47091 * 60.00254 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99871 * 197.26604 * 7 2 1 9 9 N 1.36934 * 119.99795 * 17.26991 * 7 2 1 10 10 C 1.47211 * 120.81293 * 27.52334 * 9 7 2 11 11 C 1.53193 * 108.84873 * 126.34528 * 10 9 7 12 12 C 1.53045 * 109.31430 * 54.65340 * 11 10 9 13 13 H 1.09008 * 109.45798 * 58.65258 * 12 11 10 14 14 N 1.46500 * 109.46028 * 178.60785 * 12 11 10 15 15 C 1.34772 * 120.00435 * 275.06882 * 14 12 11 16 16 O 1.21284 * 119.99982 * 0.02562 * 15 14 12 17 17 C 1.50695 * 119.99984 * 179.97438 * 15 14 12 18 18 N 1.46507 * 109.47195 * 180.02562 * 17 15 14 19 19 C 1.47308 * 126.69069 * 89.99887 * 18 17 15 20 20 C 1.51581 * 103.59073 * 179.97438 * 19 18 17 21 21 O 1.21236 * 127.15682 * 180.02562 * 20 19 18 22 22 N 1.34770 * 105.68733 * 0.02562 * 20 19 18 23 23 C 1.33791 * 111.64392 * 359.76358 * 22 20 19 24 24 O 1.21534 * 123.77223 * 180.24790 * 23 22 20 25 25 C 1.53034 * 109.53746 * 298.63446 * 12 11 10 26 26 H 1.08997 * 109.49513 * 301.41314 * 25 12 11 27 27 O 1.42896 * 109.49706 * 181.31571 * 25 12 11 28 28 C 1.46928 * 120.63084 * 207.39526 * 9 7 2 29 29 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.53679 * 6.54866 * 10 9 7 31 31 H 1.08999 * 109.56220 * 246.16161 * 10 9 7 32 32 H 1.09000 * 109.50053 * 294.70089 * 11 10 9 33 33 H 1.09005 * 109.49437 * 174.60426 * 11 10 9 34 34 H 0.97000 * 119.99720 * 95.07158 * 14 12 11 35 35 H 1.09003 * 109.47442 * 299.99970 * 17 15 14 36 36 H 1.09003 * 109.47337 * 60.00616 * 17 15 14 37 37 H 1.09001 * 110.60039 * 298.49385 * 19 18 17 38 38 H 1.08994 * 110.59948 * 61.28769 * 19 18 17 39 39 H 0.96996 * 124.17612 * 179.97438 * 22 20 19 40 40 H 0.96702 * 113.99838 * 180.15897 * 27 25 12 41 41 H 1.09000 * 109.58841 * 113.81417 * 28 9 7 42 42 H 1.09000 * 109.58556 * 353.52432 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0537 -1.2234 0.2770 9 7 1.3719 -2.3612 -0.3531 10 6 0.2214 -2.3391 -1.2713 11 6 0.4917 -3.3079 -2.4268 12 6 0.8163 -4.6924 -1.8612 13 1 -0.0190 -5.0416 -1.2541 14 7 1.0428 -5.6295 -2.9643 15 6 -0.0019 -6.2523 -3.5448 16 8 -1.1298 -6.0366 -3.1543 17 6 0.2311 -7.2157 -4.6799 18 7 -1.0531 -7.7547 -5.1345 19 6 -1.9233 -7.1911 -6.1810 20 6 -3.0955 -8.1511 -6.2247 21 8 -4.0681 -8.0869 -6.9456 22 7 -2.8316 -9.0909 -5.2956 23 6 -1.6653 -8.8634 -4.6808 24 8 -1.2110 -9.5770 -3.8082 25 6 2.0758 -4.6094 -0.9959 26 1 2.9056 -4.2367 -1.5962 27 8 2.3955 -5.9082 -0.4931 28 6 1.8235 -3.6554 0.1759 29 1 -0.4850 0.8401 0.0004 30 1 0.0874 -1.3310 -1.6635 31 1 -0.6773 -2.6484 -0.7378 32 1 1.3366 -2.9475 -3.0137 33 1 -0.3919 -3.3723 -3.0618 34 1 1.9448 -5.8017 -3.2768 35 1 0.7185 -6.6950 -5.5042 36 1 0.8677 -8.0321 -4.3387 37 1 -2.2569 -6.1909 -5.9048 38 1 -1.4056 -7.1702 -7.1400 39 1 -3.4138 -9.8415 -5.0991 40 1 3.1834 -5.9301 0.0672 41 1 1.0553 -4.0720 0.8274 42 1 2.7459 -3.5177 0.7401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090655816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:42 Heat of formation + Delta-G solvation = -94.008961 kcal Electronic energy + Delta-G solvation = -28228.934626 eV Core-core repulsion = 24018.060014 eV Total energy + Delta-G solvation = -4210.874612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.50946 -39.87020 -38.87942 -37.99541 -36.40721 -35.44455 -34.77170 -34.34978 -32.06884 -30.46889 -29.45453 -28.52436 -27.15933 -25.08895 -22.81483 -22.52679 -22.22998 -21.48621 -20.29985 -19.54217 -18.51959 -17.83587 -17.19834 -16.99959 -16.65718 -16.52344 -16.16506 -15.95731 -15.26613 -14.85180 -14.83060 -14.52007 -14.32451 -14.14338 -13.95564 -13.70682 -13.35354 -13.24144 -12.88581 -12.55951 -12.30951 -12.00562 -11.63575 -11.32023 -11.15816 -10.93227 -10.74630 -10.65892 -10.60641 -10.38470 -10.30473 -10.26376 -9.98339 -9.80158 -9.62837 -9.15060 -8.84961 -8.51818 -6.82780 -5.89481 -3.33357 1.30171 1.81326 2.61343 2.68181 2.72209 3.29713 3.33741 3.38620 3.40555 3.72608 4.31729 4.37223 4.45957 4.61058 4.74211 4.88268 4.90551 5.23651 5.27517 5.30948 5.41832 5.49090 5.69990 5.71922 5.89730 5.91328 6.04391 6.22129 6.42652 6.44748 6.59065 6.68515 6.72199 6.76946 7.02950 7.22381 7.53876 7.59203 7.68567 7.80979 7.87651 8.28746 8.32265 9.07874 9.70528 10.26564 11.19237 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.002742 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.453203 B =10209.053388 C =11075.219233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.170 3.830 11 C -0.145 4.145 12 C 0.163 3.837 13 H 0.087 0.913 14 N -0.712 5.712 15 C 0.490 3.510 16 O -0.531 6.531 17 C 0.133 3.867 18 N -0.607 5.607 19 C 0.063 3.937 20 C 0.530 3.470 21 O -0.474 6.474 22 N -0.678 5.678 23 C 0.707 3.293 24 O -0.538 6.538 25 C 0.080 3.920 26 H 0.057 0.943 27 O -0.571 6.571 28 C 0.120 3.880 29 H 0.255 0.745 30 H 0.094 0.906 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.432 0.568 40 H 0.374 0.626 41 H 0.029 0.971 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -14.925 -13.540 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.185 4.185 12 C 0.059 3.941 13 H 0.105 0.895 14 N -0.362 5.362 15 C 0.273 3.727 16 O -0.407 6.407 17 C 0.008 3.992 18 N -0.346 5.346 19 C -0.063 4.063 20 C 0.317 3.683 21 O -0.343 6.343 22 N -0.349 5.349 23 C 0.408 3.592 24 O -0.411 6.411 25 C 0.019 3.981 26 H 0.075 0.925 27 O -0.375 6.375 28 C -0.008 4.008 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.275 0.725 40 H 0.221 0.779 41 H 0.047 0.953 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.148 -14.991 -13.480 20.193 hybrid contribution 1.031 0.717 0.382 1.313 sum 2.179 -14.274 -13.098 19.495 Atomic orbital electron populations 1.70042 1.05308 1.25667 1.53210 1.25073 0.95300 0.98554 1.00515 0.86208 0.79295 0.83762 0.77380 1.20223 1.21448 1.21626 1.19195 0.92700 0.84602 1.42336 0.91439 1.44115 1.35518 1.00975 1.50644 1.20885 0.88643 0.98430 0.87647 1.22586 1.00898 0.94239 1.00789 1.21029 0.97626 0.89207 0.86221 0.89471 1.46042 1.09107 1.44858 1.36243 1.20981 0.85720 0.81567 0.84418 1.90740 1.22744 1.63629 1.63603 1.21184 0.82639 0.98250 0.97125 1.46914 1.22157 1.25826 1.39670 1.22557 0.89930 0.99779 0.94002 1.20778 0.87198 0.81878 0.78475 1.90863 1.29738 1.73561 1.40185 1.44302 1.22688 1.29702 1.38161 1.15745 0.80278 0.81983 0.81175 1.91039 1.67709 1.51160 1.31191 1.22759 0.95842 0.83203 0.96272 0.92531 1.86491 1.50517 1.30123 1.70368 1.21532 0.98826 0.87451 0.92981 0.93459 0.88804 0.95820 0.92275 0.92007 0.76926 0.86331 0.86148 0.85423 0.85668 0.72547 0.77920 0.95336 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.18 55.49 0.62 -24.76 16 2 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 3 Si 0.90 20.83 29.59 -169.99 -5.03 15.80 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.26 -6.75 9.59 -15.06 -0.14 -6.90 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -13.99 3.01 -172.09 -0.52 -14.51 16 10 C 0.17 3.93 5.33 -3.55 -0.02 3.91 16 11 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 12 C 0.16 2.74 2.12 -67.89 -0.14 2.60 16 13 H 0.09 1.77 7.58 -51.92 -0.39 1.37 16 14 N -0.71 -9.14 4.92 -53.77 -0.26 -9.41 16 15 C 0.49 6.46 7.86 -10.99 -0.09 6.38 16 16 O -0.53 -9.50 16.09 5.55 0.09 -9.41 16 17 C 0.13 1.09 6.63 -5.19 -0.03 1.06 16 18 N -0.61 -5.68 2.51 -181.40 -0.45 -6.14 16 19 C 0.06 0.43 7.66 -4.32 -0.03 0.40 16 20 C 0.53 4.76 8.81 -10.56 -0.09 4.66 16 21 O -0.47 -5.51 18.02 5.60 0.10 -5.41 16 22 N -0.68 -6.15 5.70 -15.79 -0.09 -6.24 16 23 C 0.71 8.23 8.68 -88.02 -0.76 7.47 16 24 O -0.54 -8.27 17.71 5.34 0.09 -8.18 16 25 C 0.08 1.29 3.14 -26.61 -0.08 1.20 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 O -0.57 -8.14 13.16 -35.23 -0.46 -8.60 16 28 C 0.12 2.36 6.13 -3.71 -0.02 2.34 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 35 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.12 0.89 8.03 -51.93 -0.42 0.47 16 37 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.43 3.10 8.96 -40.82 -0.37 2.73 16 40 H 0.37 3.78 9.08 45.56 0.41 4.20 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -36.97 357.30 -6.96 -43.93 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.77 Total: 7.18 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: -1.66 Total: 20.36 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.71 Total: -61.05 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.18 Total: -31.60 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.97 -6.96 -43.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090655816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.077 kcal (2) G-P(sol) polarization free energy of solvation -36.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds