Wall clock time and date at job start Fri Apr 10 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30373 * 125.96481 * 2 1 4 4 N 1.39911 * 109.02024 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.74505 * 180.02562 * 4 3 2 6 6 C 1.34420 * 108.51446 * 0.26495 * 4 3 2 7 7 F 1.35099 * 126.34230 * 179.73982 * 6 4 3 8 8 C 1.38502 * 107.30801 * 359.58075 * 6 4 3 9 9 C 1.47171 * 126.45581 * 180.12052 * 8 6 4 10 10 O 1.21632 * 120.00113 * 270.34976 * 9 8 6 11 11 N 1.34776 * 119.99844 * 90.34951 * 9 8 6 12 12 C 1.46500 * 119.99976 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.45892 * 34.99693 * 12 11 9 14 14 C 1.53037 * 109.45888 * 275.02666 * 12 11 9 15 15 C 1.53200 * 109.31237 * 178.61474 * 14 12 11 16 16 N 1.46923 * 108.77613 * 54.63190 * 15 14 12 17 17 C 1.36936 * 120.63181 * 126.36729 * 16 15 14 18 18 H 1.08002 * 119.99921 * 332.80441 * 17 16 15 19 19 C 1.38805 * 120.00375 * 152.79476 * 17 16 15 20 20 N 1.31622 * 120.00314 * 159.75512 * 19 17 16 21 21 Si 1.86808 * 119.99930 * 339.76492 * 19 17 16 22 22 H 1.48496 * 109.47299 * 94.88700 * 21 19 17 23 23 H 1.48505 * 109.46708 * 214.88528 * 21 19 17 24 24 H 1.48499 * 109.46875 * 334.88069 * 21 19 17 25 25 C 1.46925 * 118.73937 * 306.39710 * 16 15 14 26 26 C 1.53037 * 109.46120 * 154.96923 * 12 11 9 27 27 H 1.09005 * 109.49883 * 61.43286 * 26 12 11 28 28 O 1.42898 * 109.50039 * 301.33936 * 26 12 11 29 29 H 1.08995 * 109.47242 * 89.97233 * 1 2 3 30 30 H 1.09001 * 109.47001 * 209.97807 * 1 2 3 31 31 H 1.09004 * 109.46809 * 329.97117 * 1 2 3 32 32 H 1.09003 * 109.47148 * 90.02450 * 5 4 3 33 33 H 1.09000 * 109.47227 * 210.02185 * 5 4 3 34 34 H 1.09001 * 109.46902 * 330.02757 * 5 4 3 35 35 H 0.96998 * 120.00257 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.49574 * 298.56353 * 14 12 11 37 37 H 1.08999 * 109.50268 * 58.63055 * 14 12 11 38 38 H 1.08992 * 109.58611 * 174.42368 * 15 14 12 39 39 H 1.08995 * 109.58201 * 294.84576 * 15 14 12 40 40 H 0.96997 * 119.99964 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.58733 * 173.39605 * 25 16 15 42 42 H 1.09001 * 109.58164 * 293.67217 * 25 16 15 43 43 H 0.96701 * 114.00340 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0006 5 6 4.7763 1.5354 -0.0002 6 6 3.6479 -0.6962 -0.0069 7 9 4.7576 -1.4667 -0.0143 8 6 2.3374 -1.1444 -0.0006 9 6 1.8930 -2.5474 -0.0016 10 8 1.7095 -3.1265 -1.0553 11 7 1.6893 -3.1906 1.1652 12 6 1.2474 -4.5873 1.1642 13 1 1.7002 -5.1108 0.3222 14 6 -0.2768 -4.6398 1.0372 15 6 -0.7322 -6.1021 1.0017 16 7 -0.2012 -6.7916 2.1855 17 6 -1.0358 -7.4804 3.0247 18 1 -2.0730 -7.1920 3.1109 19 6 -0.5489 -8.5492 3.7643 20 7 -1.1944 -8.9558 4.8369 21 14 1.0228 -9.4106 3.2376 22 1 2.1752 -8.8318 3.9739 23 1 0.9186 -10.8604 3.5422 24 1 1.2239 -9.2247 1.7781 25 6 1.2422 -6.7276 2.4521 26 6 1.6752 -5.2583 2.4714 27 1 1.2029 -4.7507 3.3125 28 8 3.0960 -5.1817 2.6043 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 5.0658 1.7546 1.0275 33 1 5.6045 1.0483 -0.5149 34 1 4.5255 2.4641 -0.5130 35 1 1.8360 -2.7289 2.0056 36 1 -0.7305 -4.1381 1.8919 37 1 -0.5827 -4.1406 0.1178 38 1 -1.8212 -6.1459 1.0111 39 1 -0.3529 -6.5810 0.0991 40 1 -0.8539 -9.7025 5.3539 41 1 1.4559 -7.1843 3.4185 42 1 1.7823 -7.2599 1.6691 43 1 3.4381 -5.5886 3.4120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090771085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:44 Heat of formation + Delta-G solvation = -46.637282 kcal Electronic energy + Delta-G solvation = -28598.452214 eV Core-core repulsion = 24402.004582 eV Total energy + Delta-G solvation = -4196.447632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.48145 -42.51559 -40.95449 -39.43573 -37.03258 -35.85087 -35.23607 -34.06969 -32.20542 -31.29240 -30.72768 -30.30855 -27.47801 -26.56924 -24.74665 -23.84591 -23.04197 -21.90985 -21.38669 -21.14889 -19.33846 -18.74796 -18.30353 -18.10680 -17.90735 -17.58347 -17.17260 -16.72864 -16.10691 -15.77142 -15.74186 -15.64911 -15.17839 -15.01775 -14.74044 -14.60707 -14.48536 -14.25994 -14.20515 -13.95720 -13.71037 -13.63190 -13.27858 -13.06986 -13.02698 -12.70299 -12.47585 -12.34282 -12.07676 -11.98024 -11.71745 -11.44370 -11.17015 -11.09023 -10.68463 -10.43563 -10.13095 -9.90680 -9.00805 -8.17480 -5.51099 0.19253 0.85119 1.10742 1.26391 1.40059 1.42775 1.50193 2.15344 2.38808 2.72584 2.89690 3.14072 3.27129 3.34095 3.72567 3.74932 3.90843 4.01508 4.07035 4.12099 4.22601 4.27049 4.29400 4.36675 4.57424 4.57673 4.70218 4.72892 4.76606 4.79077 4.88363 4.92614 4.94110 5.04921 5.30595 5.33864 5.40704 5.59548 5.83601 6.12343 6.22451 6.46926 6.71632 6.88532 7.13746 7.57458 7.97350 9.01792 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.003197 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.940571 B = 8755.164167 C = 9376.366080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.133 3.867 3 N -0.280 5.280 4 N -0.367 5.367 5 C 0.080 3.920 6 C 0.290 3.710 7 F -0.089 7.089 8 C -0.310 4.310 9 C 0.603 3.397 10 O -0.571 6.571 11 N -0.691 5.691 12 C 0.166 3.834 13 H 0.068 0.932 14 C -0.127 4.127 15 C 0.144 3.856 16 N -0.614 5.614 17 C -0.247 4.247 18 H 0.062 0.938 19 C -0.030 4.030 20 N -0.952 5.952 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.312 1.312 24 H -0.268 1.268 25 C 0.099 3.901 26 C 0.097 3.903 27 H 0.073 0.927 28 O -0.571 6.571 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.411 0.589 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 23.256 -7.406 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 N -0.103 5.103 4 N -0.152 5.152 5 C -0.058 4.058 6 C 0.141 3.859 7 F -0.069 7.069 8 C -0.326 4.326 9 C 0.388 3.612 10 O -0.450 6.450 11 N -0.340 5.340 12 C 0.061 3.939 13 H 0.086 0.914 14 C -0.166 4.166 15 C 0.018 3.982 16 N -0.339 5.339 17 C -0.377 4.377 18 H 0.080 0.920 19 C -0.225 4.225 20 N -0.598 5.598 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.241 1.241 24 H -0.193 1.193 25 C -0.028 4.028 26 C 0.035 3.965 27 H 0.091 0.909 28 O -0.378 6.378 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 11.529 24.391 -8.596 28.315 hybrid contribution 1.153 -2.238 0.917 2.679 sum 12.682 22.154 -7.679 26.657 Atomic orbital electron populations 1.20461 0.83419 1.05141 1.04803 1.22561 0.98317 0.87172 0.95306 1.77284 0.84660 1.21166 1.27228 1.49037 1.08000 1.02288 1.55848 1.22517 0.82532 0.94670 1.06097 1.17822 0.83069 0.82701 1.02322 1.91668 1.49650 1.71787 1.93761 1.19648 0.91351 0.94977 1.26633 1.17222 0.76010 0.84505 0.83458 1.90782 1.53085 1.68480 1.32653 1.45847 1.67137 1.12485 1.08556 1.20779 0.94990 0.81144 0.96951 0.91429 1.22252 0.93353 0.98013 1.03029 1.21109 0.98575 0.90687 0.87780 1.44427 1.02593 1.60183 1.26735 1.18895 0.94045 1.08166 1.16572 0.92004 1.25841 1.01070 0.98294 0.97300 1.69940 1.43333 1.29685 1.16840 0.86050 0.80957 0.77021 0.79223 1.19530 1.24111 1.19279 1.22036 0.85216 0.95899 0.99612 1.22428 0.81389 0.95574 0.97070 0.90947 1.86440 1.20428 1.82452 1.48472 0.88783 0.89697 0.88000 0.87907 0.87520 0.86573 0.75241 0.90523 0.89977 0.90999 0.95176 0.92845 0.91774 0.95050 0.75671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.28 71.24 0.73 -0.51 16 2 C 0.13 2.84 7.26 43.55 0.32 3.16 16 3 N -0.28 -5.82 12.49 -46.64 -0.58 -6.41 16 4 N -0.37 -6.73 3.98 -368.85 -1.47 -8.20 16 5 C 0.08 0.64 11.43 127.77 1.46 2.10 16 6 C 0.29 6.65 8.70 84.36 0.73 7.38 16 7 F -0.09 -2.09 17.31 44.97 0.78 -1.31 16 8 C -0.31 -7.85 5.89 -20.09 -0.12 -7.97 16 9 C 0.60 18.12 7.32 86.59 0.63 18.75 16 10 O -0.57 -21.58 16.77 -4.13 -0.07 -21.65 16 11 N -0.69 -18.86 4.91 -445.92 -2.19 -21.05 16 12 C 0.17 5.31 2.12 45.02 0.10 5.41 16 13 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 14 C -0.13 -3.95 5.65 30.67 0.17 -3.78 16 15 C 0.14 5.43 6.52 86.37 0.56 5.99 16 16 N -0.61 -27.71 2.77 -699.11 -1.94 -29.65 16 17 C -0.25 -13.43 10.04 84.03 0.84 -12.59 16 18 H 0.06 3.64 8.05 -2.91 -0.02 3.61 16 19 C -0.03 -1.69 5.24 84.86 0.44 -1.24 16 20 N -0.95 -57.91 13.97 21.65 0.30 -57.61 16 21 Si 0.94 45.23 24.34 68.60 1.67 46.90 16 22 H -0.27 -11.89 6.70 99.48 0.67 -11.22 16 23 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 24 H -0.27 -12.76 6.45 99.48 0.64 -12.12 16 25 C 0.10 4.01 3.82 86.36 0.33 4.34 16 26 C 0.10 3.14 3.14 30.67 0.10 3.24 16 27 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 28 O -0.57 -16.59 13.16 -148.98 -1.96 -18.56 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.33 8.01 -2.39 -0.02 1.31 16 31 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.41 9.42 8.59 -92.71 -0.80 8.63 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.07 2.67 7.93 -2.39 -0.02 2.66 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.06 2.77 4.50 -2.38 -0.01 2.76 16 42 H 0.03 1.33 6.97 -2.39 -0.02 1.31 16 43 H 0.39 8.59 9.08 -74.06 -0.67 7.92 16 Total: -1.00 -74.46 359.67 0.34 -74.12 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.51 Total: 19.14 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.30 Total: 24.29 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -5.88 Total: -122.93 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -2.03 Total: -40.21 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.90 kcal Total: -74.46 0.34 -74.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090771085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.484 kcal (2) G-P(sol) polarization free energy of solvation -74.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds