Wall clock time and date at job start Fri Apr 10 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30377 * 125.96488 * 2 1 4 4 N 1.39917 * 109.01959 * 180.02562 * 3 2 1 5 5 C 1.46504 * 125.73953 * 180.02562 * 4 3 2 6 6 C 1.34410 * 108.51588 * 359.76265 * 4 3 2 7 7 F 1.35101 * 126.34641 * 180.25481 * 6 4 3 8 8 C 1.38502 * 107.31336 * 0.37389 * 6 4 3 9 9 C 1.47159 * 126.46073 * 179.89606 * 8 6 4 10 10 O 1.21642 * 120.00290 * 269.68489 * 9 8 6 11 11 N 1.34778 * 120.00069 * 89.68736 * 9 8 6 12 12 C 1.46507 * 119.99958 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.46047 * 324.99810 * 12 11 9 14 14 C 1.53042 * 109.44771 * 84.96397 * 12 11 9 15 15 C 1.53193 * 109.30944 * 181.38028 * 14 12 11 16 16 N 1.46930 * 108.77444 * 305.36334 * 15 14 12 17 17 C 1.36936 * 120.63181 * 233.59025 * 16 15 14 18 18 H 1.07996 * 120.00436 * 152.30999 * 17 16 15 19 19 C 1.38820 * 119.99826 * 332.30826 * 17 16 15 20 20 N 1.31616 * 120.00072 * 342.59806 * 19 17 16 21 21 Si 1.86799 * 119.99731 * 162.59987 * 19 17 16 22 22 H 1.48499 * 109.46914 * 94.35000 * 21 19 17 23 23 H 1.48500 * 109.46920 * 214.34706 * 21 19 17 24 24 H 1.48490 * 109.47281 * 334.34870 * 21 19 17 25 25 C 1.46924 * 118.73814 * 53.61033 * 16 15 14 26 26 C 1.53043 * 109.45949 * 205.02559 * 12 11 9 27 27 H 1.08996 * 109.49490 * 298.57954 * 26 12 11 28 28 O 1.42901 * 109.49386 * 58.67419 * 26 12 11 29 29 H 1.08996 * 109.46822 * 269.97666 * 1 2 3 30 30 H 1.08998 * 109.47160 * 29.97677 * 1 2 3 31 31 H 1.08997 * 109.46974 * 149.97146 * 1 2 3 32 32 H 1.08999 * 109.47180 * 90.01789 * 5 4 3 33 33 H 1.09004 * 109.46853 * 210.02290 * 5 4 3 34 34 H 1.09001 * 109.46968 * 330.01554 * 5 4 3 35 35 H 0.96998 * 120.00320 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.49848 * 301.32807 * 14 12 11 37 37 H 1.08993 * 109.49553 * 61.42956 * 14 12 11 38 38 H 1.09000 * 109.58551 * 185.58207 * 15 14 12 39 39 H 1.08996 * 109.70710 * 65.22360 * 15 14 12 40 40 H 0.96992 * 120.00302 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.58687 * 186.60330 * 25 16 15 42 42 H 1.09003 * 109.70156 * 66.25033 * 25 16 15 43 43 H 0.96700 * 113.99670 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6112 0.6474 -0.0006 5 6 4.7763 1.5356 -0.0002 6 6 3.6480 -0.6961 0.0043 7 9 4.7577 -1.4667 0.0103 8 6 2.3375 -1.1444 -0.0006 9 6 1.8932 -2.5473 0.0000 10 8 1.7086 -3.1273 -1.0532 11 7 1.6906 -3.1896 1.1675 12 6 1.2488 -4.5864 1.1680 13 1 0.5767 -4.7551 0.3266 14 6 2.4656 -5.5059 1.0408 15 6 1.9974 -6.9641 1.0070 16 7 1.1675 -7.2219 2.1918 17 6 1.4546 -8.2650 3.0312 18 1 1.1774 -8.2115 4.0736 19 6 2.1020 -9.3915 2.5421 20 7 2.1370 -9.6198 1.2464 21 14 2.9233 -10.5831 3.7232 22 1 1.9820 -11.6842 4.0497 23 1 4.1429 -11.1460 3.0899 24 1 3.2980 -9.8665 4.9686 25 6 0.0235 -6.3394 2.4586 26 6 0.5138 -4.8882 2.4761 27 1 1.1927 -4.7436 3.3165 28 8 -0.6044 -4.0084 2.6086 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 5.0657 1.7548 1.0275 33 1 5.6046 1.0485 -0.5150 34 1 4.5256 2.4641 -0.5131 35 1 1.8381 -2.7273 2.0073 36 1 3.0017 -5.2745 0.1205 37 1 3.1260 -5.3555 1.8947 38 1 2.8632 -7.6262 1.0164 39 1 1.4117 -7.1412 0.1050 40 1 2.5897 -10.4066 0.9047 41 1 -0.4130 -6.5892 3.4256 42 1 -0.7258 -6.4625 1.6766 43 1 -1.1177 -4.1438 3.4169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090771086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:47 Heat of formation + Delta-G solvation = -24.117567 kcal Electronic energy + Delta-G solvation = -28476.819462 eV Core-core repulsion = 24281.348357 eV Total energy + Delta-G solvation = -4195.471104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.154 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.48938 -41.56860 -39.46567 -37.78750 -35.38866 -34.42204 -34.22853 -31.96812 -30.76019 -30.03539 -29.49364 -28.47034 -26.41818 -25.06422 -22.97467 -22.28045 -21.60577 -20.86694 -20.10712 -19.48983 -18.08878 -17.22094 -17.07097 -16.77818 -16.45012 -16.23383 -15.83143 -14.94255 -14.91118 -14.54999 -14.18550 -13.95161 -13.86135 -13.82541 -13.53392 -13.51179 -13.15838 -12.96286 -12.70069 -12.59915 -12.35880 -12.24666 -12.02099 -11.55660 -11.13260 -11.08980 -10.86587 -10.67582 -10.31096 -10.26682 -9.96768 -9.88301 -9.70742 -9.58476 -9.43731 -8.91753 -8.72697 -8.43865 -6.76462 -5.84291 -3.28056 1.14287 1.66193 2.06903 2.70538 3.34312 3.42116 3.43588 3.45055 3.63587 4.11222 4.38077 4.51542 4.54011 4.67314 4.83204 4.95068 5.01263 5.10152 5.31569 5.34172 5.43688 5.49773 5.55776 5.57962 5.64915 5.79104 5.99226 6.11943 6.15614 6.33930 6.43107 6.49550 6.54703 6.69035 6.78709 6.88891 7.12581 7.30666 7.62204 7.73669 7.76737 7.93301 8.38309 8.45475 9.13808 9.76471 10.32295 11.24299 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.003105 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.277900 B = 9015.912378 C = 9770.122495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.274 5.274 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.291 3.709 7 F -0.087 7.087 8 C -0.284 4.284 9 C 0.595 3.405 10 O -0.530 6.530 11 N -0.704 5.704 12 C 0.162 3.838 13 H 0.090 0.910 14 C -0.147 4.147 15 C 0.171 3.829 16 N -0.588 5.588 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.898 5.898 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.121 3.879 26 C 0.081 3.919 27 H 0.056 0.944 28 O -0.570 6.570 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.025 0.975 40 H 0.255 0.745 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 22.077 0.736 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 N -0.097 5.097 4 N -0.162 5.162 5 C -0.047 4.047 6 C 0.144 3.856 7 F -0.066 7.066 8 C -0.300 4.300 9 C 0.378 3.622 10 O -0.406 6.406 11 N -0.353 5.353 12 C 0.059 3.941 13 H 0.108 0.892 14 C -0.188 4.188 15 C 0.045 3.955 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.542 5.542 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.007 4.007 26 C 0.020 3.980 27 H 0.074 0.926 28 O -0.374 6.374 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.164 23.031 -0.693 23.143 hybrid contribution 0.912 -1.609 1.495 2.378 sum 3.076 21.421 0.802 21.656 Atomic orbital electron populations 1.20339 0.85018 1.04323 1.04036 1.22231 0.97271 0.87945 0.95755 1.77294 0.84098 1.21200 1.27133 1.48652 1.07285 1.02581 1.57687 1.22053 0.83718 0.94659 1.04270 1.17808 0.83446 0.81802 1.02502 1.91677 1.49628 1.71535 1.93765 1.19820 0.90255 0.95990 1.23908 1.16973 0.77330 0.83654 0.84201 1.90820 1.51061 1.67375 1.31346 1.46080 1.67679 1.13695 1.07802 1.21056 0.96096 0.79073 0.97909 0.89218 1.22609 0.96347 0.98584 1.01215 1.20830 0.96322 0.89937 0.88404 1.44047 1.27384 1.31397 1.28389 1.19148 1.35674 0.93829 0.90222 0.91566 1.25066 1.01891 0.96688 0.95768 1.70034 1.44979 1.27804 1.11374 0.86279 0.79122 0.80970 0.80369 1.21391 1.21475 1.20400 1.21520 0.91127 0.88360 0.99645 1.22764 0.87200 0.91703 0.96356 0.92627 1.86477 1.43772 1.60459 1.46721 0.89365 0.90037 0.89509 0.89854 0.89031 0.88186 0.76965 0.91879 0.92326 0.88890 0.95721 0.93442 0.92198 0.95267 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.28 36.01 0.37 -0.40 16 2 C 0.13 1.68 7.26 -82.00 -0.60 1.08 16 3 N -0.27 -3.32 12.49 33.91 0.42 -2.89 16 4 N -0.38 -4.10 3.98 -67.94 -0.27 -4.37 16 5 C 0.09 0.55 11.43 59.85 0.68 1.24 16 6 C 0.29 3.76 8.70 -16.33 -0.14 3.62 16 7 F -0.09 -1.12 17.31 2.25 0.04 -1.08 16 8 C -0.28 -4.04 5.89 -104.97 -0.62 -4.66 16 9 C 0.60 10.00 7.32 -12.64 -0.09 9.91 16 10 O -0.53 -10.97 16.77 5.24 0.09 -10.88 16 11 N -0.70 -10.97 4.91 -54.91 -0.27 -11.24 16 12 C 0.16 2.94 2.12 -67.88 -0.14 2.79 16 13 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 14 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 15 C 0.17 4.10 5.31 -3.71 -0.02 4.08 16 16 N -0.59 -14.34 2.99 -172.32 -0.52 -14.85 16 17 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 18 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 19 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 20 N -0.90 -25.80 11.19 55.49 0.62 -25.17 16 21 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.12 2.43 6.14 -3.71 -0.02 2.41 16 26 C 0.08 1.35 3.14 -26.61 -0.08 1.27 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 O -0.57 -8.19 13.16 -35.23 -0.46 -8.65 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.94 8.01 -51.93 -0.42 0.52 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.40 5.31 8.59 -40.82 -0.35 4.95 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 2.48 6.04 -51.93 -0.31 2.16 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.37 3.80 9.08 45.56 0.41 4.22 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -33.76 366.29 -6.15 -39.91 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.25 Total: 6.26 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -1.04 Total: 11.27 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.01 Total: -58.53 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.38 Total: -19.53 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.76 -6.15 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090771086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.791 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds