Wall clock time and date at job start Fri Apr 10 2020 18:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30374 * 125.96652 * 2 1 4 4 N 1.39919 * 109.02029 * 179.97438 * 3 2 1 5 5 C 1.46498 * 125.74255 * 180.02562 * 4 3 2 6 6 C 1.34416 * 108.51292 * 0.26270 * 4 3 2 7 7 F 1.35100 * 126.34036 * 179.73523 * 6 4 3 8 8 C 1.38507 * 107.31191 * 359.58870 * 6 4 3 9 9 C 1.47169 * 126.45537 * 180.12170 * 8 6 4 10 10 O 1.21631 * 120.00000 * 270.34279 * 9 8 6 11 11 N 1.34772 * 119.99803 * 90.34334 * 9 8 6 12 12 C 1.46510 * 120.00092 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45380 * 35.02494 * 12 11 9 14 14 C 1.53044 * 109.45761 * 275.06928 * 12 11 9 15 15 C 1.53194 * 109.31137 * 301.33932 * 14 12 11 16 16 N 1.46925 * 108.77477 * 305.36786 * 15 14 12 17 17 C 1.36936 * 120.62875 * 233.62839 * 16 15 14 18 18 H 1.07997 * 119.99742 * 27.66707 * 17 16 15 19 19 C 1.38813 * 120.00061 * 207.66765 * 17 16 15 20 20 N 1.31620 * 119.99747 * 17.36505 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 197.36475 * 19 17 16 22 22 H 1.48492 * 109.47034 * 90.00030 * 21 19 17 23 23 H 1.48508 * 109.46906 * 209.99776 * 21 19 17 24 24 H 1.48497 * 109.46900 * 329.99517 * 21 19 17 25 25 C 1.46927 * 118.73970 * 53.61178 * 16 15 14 26 26 C 1.53039 * 109.46310 * 154.99842 * 12 11 9 27 27 H 1.08996 * 109.49557 * 178.64046 * 26 12 11 28 28 O 1.42902 * 109.49466 * 298.70621 * 26 12 11 29 29 H 1.08995 * 109.47083 * 90.02182 * 1 2 3 30 30 H 1.09004 * 109.47139 * 210.02418 * 1 2 3 31 31 H 1.08998 * 109.46582 * 330.01785 * 1 2 3 32 32 H 1.08999 * 109.47143 * 90.02146 * 5 4 3 33 33 H 1.09006 * 109.46809 * 330.02526 * 5 4 3 34 34 H 1.08996 * 109.47274 * 210.02608 * 5 4 3 35 35 H 0.97003 * 120.00577 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.49510 * 61.29037 * 14 12 11 37 37 H 1.08993 * 109.49391 * 181.38840 * 14 12 11 38 38 H 1.08991 * 109.58625 * 185.57931 * 15 14 12 39 39 H 1.08999 * 109.58206 * 65.15517 * 15 14 12 40 40 H 0.97010 * 119.99648 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.58431 * 186.60217 * 25 16 15 42 42 H 1.08999 * 109.70578 * 66.24785 * 25 16 15 43 43 H 0.96705 * 113.99746 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2728 1.0552 0.0000 4 7 3.6112 0.6474 0.0006 5 6 4.7764 1.5354 0.0013 6 6 3.6480 -0.6963 -0.0049 7 9 4.7577 -1.4668 -0.0112 8 6 2.3374 -1.1445 0.0005 9 6 1.8930 -2.5475 0.0000 10 8 1.7103 -3.1271 -1.0536 11 7 1.6885 -3.1899 1.1669 12 6 1.2455 -4.5865 1.1664 13 1 1.6986 -5.1107 0.3250 14 6 -0.2786 -4.6378 1.0378 15 6 -0.9115 -3.8708 2.2031 16 7 -0.3936 -4.4163 3.4652 17 6 -1.2503 -4.8419 4.4450 18 1 -2.2337 -5.2032 4.1828 19 6 -0.8549 -4.8089 5.7752 20 7 0.1739 -4.0723 6.1378 21 14 -1.7827 -5.8099 7.0505 22 1 -1.1722 -7.1591 7.1607 23 1 -1.7101 -5.1248 8.3661 24 1 -3.2034 -5.9415 6.6387 25 6 1.0610 -4.4970 3.6559 26 6 1.6717 -5.2571 2.4743 27 1 1.3215 -6.2892 2.4849 28 8 3.0968 -5.2358 2.5789 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3632 0.8902 0.5136 32 1 5.0651 1.7551 1.0291 33 1 4.5259 2.4637 -0.5121 34 1 5.6049 1.0480 -0.5126 35 1 1.8338 -2.7276 2.0072 36 1 -0.5798 -4.1809 0.0952 37 1 -0.6109 -5.6756 1.0622 38 1 -1.9947 -3.9873 2.1719 39 1 -0.6532 -2.8145 2.1283 40 1 0.4505 -4.0496 7.0673 41 1 1.2792 -5.0267 4.5832 42 1 1.4820 -3.4926 3.7012 43 1 3.4381 -5.6449 3.3859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090771088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:51 Heat of formation + Delta-G solvation = -46.730171 kcal Electronic energy + Delta-G solvation = -29154.003947 eV Core-core repulsion = 24957.552287 eV Total energy + Delta-G solvation = -4196.451660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.47296 -42.50475 -40.99692 -39.18838 -36.83841 -35.63761 -35.22890 -33.68370 -31.90071 -31.03089 -30.60409 -30.18238 -27.40954 -26.86514 -24.34534 -23.69714 -23.33488 -22.02376 -21.40158 -20.25596 -19.29059 -18.74059 -18.12521 -18.05012 -17.83190 -17.19941 -16.90691 -16.69874 -15.90409 -15.83125 -15.73681 -15.52877 -15.36141 -14.90165 -14.67863 -14.51754 -14.36143 -14.18187 -13.80711 -13.72690 -13.51678 -13.28801 -13.23619 -13.03459 -12.84340 -12.66592 -12.64504 -12.13408 -12.05485 -11.93610 -11.78234 -11.30425 -11.08438 -10.89564 -10.55813 -10.42594 -10.05147 -9.89011 -8.68103 -7.86979 -5.32109 0.20235 0.86483 1.11505 1.43789 1.49737 1.52447 1.59795 2.26360 2.52488 2.72752 3.15214 3.28274 3.30344 3.69117 3.73193 3.84178 4.04960 4.10332 4.18429 4.22530 4.29398 4.30211 4.39838 4.49710 4.56954 4.69506 4.73040 4.79215 4.86231 4.94215 5.01796 5.13463 5.19224 5.29117 5.37235 5.52304 5.60982 5.62308 5.68755 6.22414 6.37685 6.48883 6.83598 7.14253 7.15568 7.83739 8.35247 9.18626 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003654 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.881109 B = 7661.279597 C = 7803.058940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.131 3.869 3 N -0.280 5.280 4 N -0.367 5.367 5 C 0.081 3.919 6 C 0.289 3.711 7 F -0.088 7.088 8 C -0.312 4.312 9 C 0.603 3.397 10 O -0.571 6.571 11 N -0.688 5.688 12 C 0.165 3.835 13 H 0.076 0.924 14 C -0.132 4.132 15 C 0.146 3.854 16 N -0.601 5.601 17 C -0.262 4.262 18 H 0.069 0.931 19 C -0.043 4.043 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.286 1.286 23 H -0.298 1.298 24 H -0.271 1.271 25 C 0.159 3.841 26 C 0.083 3.917 27 H 0.066 0.934 28 O -0.575 6.575 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.404 0.596 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.250 0.750 41 H 0.064 0.936 42 H 0.008 0.992 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 8.406 -10.863 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 N -0.103 5.103 4 N -0.152 5.152 5 C -0.058 4.058 6 C 0.140 3.860 7 F -0.067 7.067 8 C -0.328 4.328 9 C 0.388 3.612 10 O -0.451 6.451 11 N -0.338 5.338 12 C 0.061 3.939 13 H 0.094 0.906 14 C -0.172 4.172 15 C 0.021 3.979 16 N -0.326 5.326 17 C -0.392 4.392 18 H 0.087 0.913 19 C -0.239 4.239 20 N -0.576 5.576 21 Si 0.791 3.209 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.195 1.195 25 C 0.032 3.968 26 C 0.022 3.978 27 H 0.083 0.917 28 O -0.382 6.382 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.240 0.760 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.026 0.974 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.478 9.644 -12.008 17.121 hybrid contribution 0.314 -1.574 1.936 2.515 sum 7.792 8.069 -10.072 15.076 Atomic orbital electron populations 1.20436 0.83671 1.04784 1.04839 1.22529 0.98266 0.87368 0.95373 1.77258 0.84725 1.21076 1.27288 1.49032 1.07967 1.02283 1.55896 1.22522 0.82544 0.94726 1.05993 1.17788 0.83040 0.82728 1.02403 1.91659 1.49519 1.71760 1.93780 1.19734 0.91466 0.95295 1.26342 1.17158 0.76133 0.84445 0.83433 1.90734 1.53646 1.68387 1.32303 1.45980 1.66462 1.13083 1.08269 1.20836 0.94943 0.81269 0.96893 0.90582 1.22273 0.93341 1.02243 0.99309 1.21006 0.97262 0.94704 0.84957 1.44163 1.01281 1.72406 1.14760 1.19512 0.98371 1.34961 0.86369 0.91286 1.25679 0.99662 0.99752 0.98763 1.70157 1.30465 1.40535 1.16438 0.85346 0.78859 0.78317 0.78381 1.21281 1.22501 1.19533 1.21170 0.83414 0.96489 0.95734 1.22625 0.80718 0.98885 0.95524 0.91657 1.86406 1.20308 1.84258 1.47196 0.88187 0.90417 0.88306 0.88213 0.86420 0.87249 0.75990 0.90493 0.90390 0.92136 0.96061 0.94090 0.91725 0.97425 0.75998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.28 71.24 0.73 -1.02 16 2 C 0.13 3.60 7.26 43.55 0.32 3.92 16 3 N -0.28 -7.33 12.49 -46.64 -0.58 -7.91 16 4 N -0.37 -8.50 3.98 -368.86 -1.47 -9.97 16 5 C 0.08 0.96 11.43 127.77 1.46 2.43 16 6 C 0.29 8.08 8.70 84.36 0.73 8.81 16 7 F -0.09 -2.41 17.31 44.97 0.78 -1.63 16 8 C -0.31 -9.71 5.89 -20.09 -0.12 -9.83 16 9 C 0.60 21.22 7.32 86.59 0.63 21.85 16 10 O -0.57 -23.10 16.77 -4.13 -0.07 -23.17 16 11 N -0.69 -23.82 4.15 -445.90 -1.85 -25.67 16 12 C 0.17 5.81 2.47 45.02 0.11 5.92 16 13 H 0.08 2.79 7.58 -2.39 -0.02 2.77 16 14 C -0.13 -4.44 5.77 30.67 0.18 -4.26 16 15 C 0.15 5.64 6.26 86.36 0.54 6.18 16 16 N -0.60 -27.74 2.99 -699.11 -2.09 -29.83 16 17 C -0.26 -13.45 9.58 84.03 0.81 -12.65 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.04 -2.23 4.91 84.86 0.42 -1.82 16 20 N -0.93 -51.47 11.19 21.65 0.24 -51.23 16 21 Si 0.96 42.62 29.59 68.60 2.03 44.65 16 22 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C 0.16 6.94 4.64 86.36 0.40 7.34 16 26 C 0.08 3.02 3.36 30.67 0.10 3.13 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 O -0.58 -19.27 13.21 -148.98 -1.97 -21.24 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 1.86 8.01 -2.39 -0.02 1.84 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.40 14.42 6.85 -92.71 -0.64 13.79 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.06 2.28 7.93 -2.39 -0.02 2.27 16 39 H 0.02 0.83 7.74 -2.39 -0.02 0.81 16 40 H 0.25 13.52 8.31 -92.70 -0.77 12.75 16 41 H 0.06 3.20 6.03 -2.39 -0.01 3.18 16 42 H 0.01 0.36 6.65 -2.39 -0.02 0.35 16 43 H 0.39 10.40 9.08 -74.05 -0.67 9.73 16 Total: -1.00 -67.70 362.06 1.09 -66.61 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.24 Total: 29.40 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 6.31 Total: 29.99 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.75 Total: -124.61 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -2.04 Total: -44.41 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.63 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.70 1.09 -66.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090771088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.885 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds