Wall clock time and date at job start Fri Apr 10 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48495 * 109.46878 * 274.34868 * 3 2 1 5 5 H 1.48497 * 109.47117 * 34.35074 * 3 2 1 6 6 H 1.48504 * 109.46801 * 154.35108 * 3 2 1 7 7 C 1.38810 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99646 * 162.60212 * 7 2 1 9 9 N 1.36938 * 120.00459 * 342.60069 * 7 2 1 10 10 C 1.46917 * 120.62766 * 332.30698 * 9 7 2 11 11 C 1.53196 * 108.77633 * 233.58282 * 10 9 7 12 12 C 1.53039 * 109.31310 * 305.36923 * 11 10 9 13 13 H 1.08998 * 109.45008 * 301.34699 * 12 11 10 14 14 N 1.46500 * 109.45883 * 181.38253 * 12 11 10 15 15 C 1.34776 * 119.99986 * 84.92928 * 14 12 11 16 16 O 1.21275 * 119.99974 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.00077 * 179.97438 * 15 14 12 18 18 N 1.46494 * 109.47168 * 180.02562 * 17 15 14 19 19 C 1.34768 * 124.17574 * 90.00514 * 18 17 15 20 20 O 1.21232 * 127.15813 * 359.69211 * 19 18 17 21 21 C 1.51589 * 105.68429 * 179.73071 * 19 18 17 22 22 N 1.47308 * 103.59013 * 359.97438 * 21 19 18 23 23 C 1.33796 * 124.17642 * 269.69854 * 18 17 15 24 24 O 1.21529 * 123.77500 * 0.25184 * 23 18 17 25 25 C 1.53040 * 109.53630 * 61.36274 * 12 11 10 26 26 H 1.08996 * 109.49860 * 58.58769 * 25 12 11 27 27 O 1.42906 * 109.49486 * 178.67952 * 25 12 11 28 28 C 1.46930 * 120.63012 * 152.28331 * 9 7 2 29 29 H 0.96990 * 120.00275 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.59312 * 353.37282 * 10 9 7 31 31 H 1.09003 * 109.58445 * 113.80071 * 10 9 7 32 32 H 1.08998 * 109.50114 * 185.41341 * 11 10 9 33 33 H 1.09004 * 109.49489 * 65.31988 * 11 10 9 34 34 H 0.97006 * 120.00283 * 264.93412 * 14 12 11 35 35 H 1.09004 * 109.46559 * 60.00335 * 17 15 14 36 36 H 1.09002 * 109.47559 * 300.01034 * 17 15 14 37 37 H 1.08994 * 110.59633 * 118.52378 * 21 19 18 38 38 H 1.08996 * 110.59630 * 241.47321 * 21 19 18 39 39 H 0.97008 * 126.68903 * 180.02562 * 22 21 19 40 40 H 0.96701 * 113.99881 * 179.97438 * 27 25 12 41 41 H 1.09001 * 109.58832 * 6.63247 * 28 9 7 42 42 H 1.08991 * 109.70451 * 246.26864 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4056 2.0995 -1.3960 5 1 1.4966 2.6243 0.7900 6 1 3.5907 1.4154 0.6061 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2237 -0.2791 9 7 1.3726 -2.3608 0.3557 10 6 0.2289 -2.3335 1.2775 11 6 0.5026 -3.3030 2.4317 12 6 0.8198 -4.6885 1.8644 13 1 -0.0199 -5.0350 1.2621 14 7 1.0497 -5.6261 2.9664 15 6 0.0063 -6.2456 3.5529 16 8 -1.1229 -6.0272 3.1681 17 6 0.2428 -7.2105 4.6861 18 7 -1.0403 -7.7461 5.1473 19 6 -1.6166 -8.8602 4.6546 20 8 -1.1898 -9.5781 3.7759 21 6 -2.9100 -9.0285 5.4271 22 7 -2.9121 -7.8824 6.3525 23 6 -1.7820 -7.1928 6.1137 24 8 -1.4694 -6.1809 6.7097 25 6 2.0748 -4.6094 0.9921 26 1 2.9091 -4.2392 1.5878 27 8 2.3878 -5.9093 0.4878 28 6 1.8188 -3.6548 -0.1784 29 1 -0.4850 0.8399 0.0004 30 1 0.1000 -1.3250 1.6703 31 1 -0.6738 -2.6402 0.7490 32 1 -0.3776 -3.3646 3.0716 33 1 1.3518 -2.9450 3.0138 34 1 1.9529 -5.8010 3.2740 35 1 0.7368 -6.6918 5.5078 36 1 0.8748 -8.0287 4.3408 37 1 -3.7669 -8.9810 4.7552 38 1 -2.9068 -9.9677 5.9803 39 1 -3.5954 -7.6668 7.0066 40 1 3.1737 -5.9341 -0.0751 41 1 2.7391 -3.5180 -0.7462 42 1 1.0476 -4.0704 -0.8268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090794802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:58 Heat of formation + Delta-G solvation = -126.809703 kcal Electronic energy + Delta-G solvation = -28518.332484 eV Core-core repulsion = 24306.035526 eV Total energy + Delta-G solvation = -4212.296959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.40001 -41.07817 -39.69421 -39.44128 -37.22085 -36.99566 -35.91841 -35.60436 -33.84252 -31.97434 -30.48285 -29.54881 -28.43600 -26.87645 -24.25080 -23.94029 -23.70322 -22.34940 -21.48511 -20.95337 -19.21898 -19.02999 -18.68132 -18.05835 -17.87944 -17.46379 -17.43515 -16.80502 -16.38869 -16.30713 -16.14996 -15.72028 -15.58656 -15.30386 -15.05266 -14.97893 -14.91348 -14.53493 -14.09829 -13.93067 -13.75932 -13.34425 -13.24563 -12.99468 -12.72608 -12.42482 -12.19477 -12.12851 -12.10798 -11.90876 -11.73708 -11.41230 -11.37494 -11.09582 -10.72381 -10.58586 -10.41820 -10.12016 -8.79406 -7.92057 -5.39649 0.60046 1.01158 1.46960 1.47391 1.49306 1.59262 1.79322 2.20275 2.29954 2.48145 3.02684 3.09558 3.25358 3.59248 3.61424 3.74348 3.85431 4.02376 4.12123 4.19784 4.29448 4.31398 4.31759 4.36134 4.49520 4.65160 4.65520 4.80781 4.90388 4.98500 5.09690 5.33422 5.40061 5.57032 5.63127 5.81194 5.96420 6.30888 6.31691 6.45529 6.88007 7.06034 7.07305 7.14156 7.75736 8.28570 9.15513 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.002933 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.088271 B = 9543.409348 C =10324.203141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.266 4.266 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.172 3.828 13 H 0.051 0.949 14 N -0.697 5.697 15 C 0.493 3.507 16 O -0.582 6.582 17 C 0.103 3.897 18 N -0.569 5.569 19 C 0.516 3.484 20 O -0.500 6.500 21 C 0.076 3.924 22 N -0.708 5.708 23 C 0.698 3.302 24 O -0.584 6.584 25 C 0.104 3.896 26 H 0.078 0.922 27 O -0.570 6.570 28 C 0.117 3.883 29 H 0.251 0.749 30 H 0.062 0.938 31 H -0.012 1.012 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.418 0.582 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.171 0.829 39 H 0.455 0.545 40 H 0.397 0.603 41 H 0.078 0.922 42 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 -21.194 13.908 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.396 4.396 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.055 3.945 11 C -0.169 4.169 12 C 0.066 3.934 13 H 0.070 0.930 14 N -0.348 5.348 15 C 0.279 3.721 16 O -0.461 6.461 17 C -0.022 4.022 18 N -0.314 5.314 19 C 0.306 3.694 20 O -0.372 6.372 21 C -0.050 4.050 22 N -0.373 5.373 23 C 0.398 3.602 24 O -0.461 6.461 25 C 0.043 3.957 26 H 0.096 0.904 27 O -0.377 6.377 28 C -0.010 4.010 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.006 0.994 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.188 0.812 39 H 0.302 0.698 40 H 0.247 0.753 41 H 0.096 0.904 42 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -0.377 -20.948 13.755 25.064 hybrid contribution 0.452 1.592 -0.472 1.721 sum 0.076 -19.356 13.284 23.476 Atomic orbital electron populations 1.70212 1.07026 1.26077 1.55006 1.25912 0.95984 1.01962 1.00902 0.85200 0.78318 0.79159 0.77375 1.21259 1.22211 1.18750 1.19585 0.93309 0.85490 1.41167 0.90348 1.44256 1.35676 1.02198 1.50639 1.20518 0.87805 0.97658 0.88545 1.22309 1.01079 0.94592 0.98871 1.20624 0.97330 0.88480 0.86947 0.93024 1.45726 1.10137 1.43837 1.35107 1.21442 0.84961 0.81519 0.84210 1.90705 1.24549 1.65494 1.65401 1.21600 0.84434 0.99071 0.97078 1.45984 1.22578 1.26972 1.35861 1.21699 0.87245 0.78744 0.81729 1.90820 1.69174 1.48009 1.29174 1.22729 0.95717 0.93092 0.93412 1.45332 1.22237 1.27952 1.41821 1.16020 0.81880 0.82601 0.79658 1.91000 1.74814 1.25410 1.54883 1.22287 0.95625 0.83262 0.94566 0.90394 1.86458 1.52353 1.28261 1.70677 1.21703 0.98720 0.86236 0.94327 0.94044 0.91921 0.99355 0.93059 0.90902 0.74459 0.83499 0.82907 0.83483 0.81200 0.69772 0.75282 0.90376 0.97252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.33 11.19 21.65 0.24 -56.08 16 2 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 3 Si 0.97 44.26 29.59 68.60 2.03 46.29 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.27 -14.24 9.58 84.03 0.81 -13.43 16 8 H 0.08 3.95 7.89 -2.91 -0.02 3.93 16 9 N -0.60 -30.09 2.99 -699.11 -2.09 -32.18 16 10 C 0.18 9.22 5.31 86.37 0.46 9.68 16 11 C -0.13 -5.27 5.65 30.67 0.17 -5.09 16 12 C 0.17 6.23 2.12 45.02 0.10 6.32 16 13 H 0.05 2.27 7.58 -2.39 -0.02 2.26 16 14 N -0.70 -19.69 4.92 -442.41 -2.18 -21.86 16 15 C 0.49 15.15 7.86 87.66 0.69 15.83 16 16 O -0.58 -23.75 16.09 -3.02 -0.05 -23.80 16 17 C 0.10 2.14 6.18 85.64 0.53 2.67 16 18 N -0.57 -12.49 2.09 -777.21 -1.63 -14.12 16 19 C 0.52 9.95 8.32 87.94 0.73 10.68 16 20 O -0.50 -12.76 17.76 -2.88 -0.05 -12.81 16 21 C 0.08 0.61 7.97 85.76 0.68 1.29 16 22 N -0.71 -8.62 6.58 -480.33 -3.16 -11.78 16 23 C 0.70 15.98 8.62 179.44 1.55 17.53 16 24 O -0.58 -18.27 17.48 -3.81 -0.07 -18.34 16 25 C 0.10 3.33 3.14 30.67 0.10 3.42 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 O -0.57 -15.30 13.16 -148.98 -1.96 -17.27 16 28 C 0.12 4.69 6.14 86.36 0.53 5.22 16 29 H 0.25 14.59 8.31 -92.72 -0.77 13.82 16 30 H 0.06 3.56 6.04 -2.39 -0.01 3.55 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.79 8.14 -2.38 -0.02 2.78 16 34 H 0.42 8.45 8.60 -92.70 -0.80 7.65 16 35 H 0.15 2.41 7.86 -2.39 -0.02 2.40 16 36 H 0.15 2.26 8.01 -2.39 -0.02 2.24 16 37 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.17 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.45 3.07 8.96 -92.70 -0.83 2.24 16 40 H 0.40 6.92 9.08 -74.06 -0.67 6.24 16 41 H 0.08 2.83 7.93 -2.39 -0.02 2.81 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -87.94 356.24 -3.35 -91.29 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -1.20 Total: 19.02 kcal Atomic # 6 Polarization: 44.89 SS G_CDS: 6.76 Total: 51.65 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -8.81 Total: -136.03 kcal Atomic # 8 Polarization: -70.09 SS G_CDS: -2.13 Total: -72.22 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -87.94 -3.35 -91.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090794802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.517 kcal (2) G-P(sol) polarization free energy of solvation -87.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds