Wall clock time and date at job start Fri Apr 10 2020 18:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21577 * 120.00151 * 0.02562 * 19 18 17 21 21 C 1.47664 * 119.99785 * 180.02562 * 19 18 17 22 22 N 1.31822 * 126.46184 * 359.68756 * 21 19 18 23 23 N 1.28471 * 110.13859 * 179.85701 * 22 21 19 24 24 C 1.46505 * 124.93529 * 180.14982 * 23 22 21 25 25 C 1.35644 * 110.12956 * 0.41861 * 23 22 21 26 26 C 1.35457 * 107.13005 * 359.74779 * 25 23 22 27 27 Cl 1.73601 * 127.23831 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 29 29 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 30 30 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 31 31 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 32 32 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 33 33 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 34 34 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 35 35 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 36 36 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 37 37 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 38 38 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 39 39 H 1.09001 * 109.46917 * 270.30896 * 24 23 22 40 40 H 1.08991 * 109.47182 * 30.30997 * 24 23 22 41 41 H 1.09003 * 109.46930 * 150.31145 * 24 23 22 42 42 H 1.07997 * 126.43504 * 179.71499 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6635 1.0798 4.9157 21 6 3.2347 -0.9329 5.9534 22 7 3.4400 -2.2350 5.9643 23 7 3.7882 -2.6180 7.1401 24 6 4.0985 -4.0000 7.5146 25 6 3.8209 -1.5580 7.9858 26 6 3.4739 -0.4634 7.2672 27 17 3.3495 1.1715 7.8374 28 1 -0.3633 -1.0272 0.0303 29 1 -0.3633 0.5399 0.8745 30 1 -0.3633 0.4875 -0.9047 31 1 1.3130 -1.4731 -1.5800 32 1 2.3716 -0.0991 -1.9990 33 1 2.3659 -2.2172 -4.2773 34 1 3.7961 -2.1446 1.2133 35 1 4.1932 -0.4492 0.7977 36 1 2.9854 0.8627 2.2436 37 1 1.2749 0.5884 2.6524 38 1 2.7627 -1.6601 3.4934 39 1 3.1877 -4.5005 7.8436 40 1 4.5113 -4.5258 6.6538 41 1 4.8271 -4.0018 8.3253 42 1 4.0753 -1.5822 9.0351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092635508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:11 Heat of formation + Delta-G solvation = 61.722503 kcal Electronic energy + Delta-G solvation = -25129.643923 eV Core-core repulsion = 21366.231498 eV Total energy + Delta-G solvation = -3763.412424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.99203 -39.39966 -37.89086 -36.66968 -34.59189 -33.75926 -32.86469 -31.02407 -30.69043 -29.44523 -27.76011 -25.93388 -25.10269 -23.45433 -22.29319 -21.90408 -20.35870 -19.94734 -19.18512 -18.15397 -16.92177 -16.75273 -16.57190 -15.84223 -15.15227 -14.93940 -14.74377 -14.33038 -14.12422 -13.74013 -13.52556 -13.47665 -13.21166 -13.00357 -12.82794 -12.48243 -12.06420 -11.81902 -11.77998 -11.62591 -11.33321 -11.17762 -10.84431 -10.78535 -10.75411 -10.19408 -10.02227 -9.94490 -9.87626 -9.66380 -9.65778 -9.52582 -9.10227 -8.83612 -8.54875 -6.78887 -5.69482 -3.01415 1.27782 1.59092 1.63665 2.40574 3.22938 3.34349 3.41311 3.46439 3.48632 4.03533 4.29835 4.51691 4.57274 4.61169 4.87150 4.90662 5.07305 5.17954 5.27374 5.39509 5.56424 5.60770 5.67276 5.82168 5.93390 6.08248 6.16041 6.22451 6.24718 6.34835 6.51123 6.54075 6.63995 6.67737 6.81528 7.00377 7.34511 7.60195 7.68246 7.69125 7.87262 8.27282 8.29396 9.25103 9.85757 10.52813 11.42546 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.002781 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.426702 B =10064.798635 C =11315.549956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.112 4.112 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.709 5.709 19 C 0.597 3.403 20 O -0.522 6.522 21 C 0.002 3.998 22 N -0.244 5.244 23 N -0.280 5.280 24 C 0.087 3.913 25 C -0.005 4.005 26 C -0.103 4.103 27 Cl -0.009 7.009 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.252 0.748 34 H 0.036 0.964 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -1.268 25.057 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.361 5.361 19 C 0.380 3.620 20 O -0.395 6.395 21 C -0.160 4.160 22 N -0.080 5.080 23 N -0.069 5.069 24 C -0.053 4.053 25 C -0.148 4.148 26 C -0.141 4.141 27 Cl 0.020 6.980 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.242 0.758 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.197 -1.413 24.283 24.325 hybrid contribution 0.607 -0.479 0.035 0.774 sum 0.410 -1.892 24.318 24.395 Atomic orbital electron populations 1.21693 0.95328 1.01444 1.00702 1.22432 0.95147 0.99115 0.96292 0.91357 1.21221 0.89213 0.93036 0.90722 1.44464 1.32766 1.51549 1.04467 1.19056 1.04450 1.18369 0.93772 0.90515 1.24809 0.98542 0.99934 0.97105 1.69979 1.30216 1.42676 1.13808 0.86135 0.78873 0.81588 0.79413 1.21680 1.21802 1.20683 1.21592 0.93041 0.97124 0.86713 1.22676 0.99441 0.98078 0.93006 0.90105 1.21460 1.00312 0.93695 0.83552 1.45915 1.68798 1.12676 1.08672 1.16757 0.77752 0.86248 0.81278 1.90834 1.51269 1.13442 1.84005 1.21988 1.08991 0.89947 0.95037 1.73663 1.16174 1.13105 1.05073 1.45383 1.47241 1.08951 1.05303 1.22282 1.03198 0.76337 1.03441 1.22621 1.07905 0.85829 0.98477 1.20838 1.11205 0.88795 0.93239 1.98367 1.96762 1.14984 1.87931 0.92810 0.93631 0.92720 0.93205 0.94246 0.93800 0.94536 0.96332 0.91103 0.91349 0.75784 0.89278 0.87922 0.88280 0.79142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.13 37.16 0.34 -1.79 16 2 C -0.11 -2.03 3.01 -88.78 -0.27 -2.30 16 3 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 4 C 0.18 4.42 4.98 -3.06 -0.02 4.41 16 5 N -0.61 -15.55 3.39 -170.08 -0.58 -16.12 16 6 C -0.23 -6.41 10.26 -15.06 -0.15 -6.56 16 7 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 8 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 9 N -0.92 -27.12 10.36 55.49 0.57 -26.54 16 10 Si 0.91 22.18 29.56 -169.99 -5.02 17.16 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.14 2.92 6.65 -2.53 -0.02 2.90 16 15 C -0.11 -1.92 2.49 -88.47 -0.22 -2.14 16 16 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 17 C 0.13 2.03 5.14 -4.04 -0.02 2.01 16 18 N -0.71 -10.28 5.50 -61.30 -0.34 -10.61 16 19 C 0.60 9.26 7.82 -12.41 -0.10 9.16 16 20 O -0.52 -9.36 15.87 5.30 0.08 -9.27 16 21 C 0.00 0.02 7.13 -82.76 -0.59 -0.57 16 22 N -0.24 -2.88 11.66 33.42 0.39 -2.49 16 23 N -0.28 -2.33 3.72 -67.94 -0.25 -2.58 16 24 C 0.09 0.29 11.32 59.85 0.68 0.96 16 25 C 0.00 -0.04 11.49 -16.86 -0.19 -0.23 16 26 C -0.10 -1.22 6.80 -39.31 -0.27 -1.48 16 27 Cl -0.01 -0.11 28.17 -51.86 -1.46 -1.57 16 28 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 1.33 6.98 -51.93 -0.36 0.97 16 32 H 0.04 1.07 7.61 -51.93 -0.40 0.67 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 36 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.41 5.50 8.19 -40.82 -0.33 5.17 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.05 8.13 -51.93 -0.42 -0.38 16 42 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -34.63 365.31 -8.12 -42.76 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.10 Total: -0.28 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.92 Total: 4.06 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.20 Total: -58.35 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.46 Total: -1.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.63 -8.12 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092635508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.479 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds