Wall clock time and date at job start Fri Apr 10 2020 18:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21577 * 120.00151 * 0.02562 * 19 18 17 21 21 C 1.47664 * 119.99785 * 180.02562 * 19 18 17 22 22 N 1.31822 * 126.46184 * 359.68756 * 21 19 18 23 23 N 1.28471 * 110.13859 * 179.85701 * 22 21 19 24 24 C 1.46505 * 124.93529 * 180.14982 * 23 22 21 25 25 C 1.35644 * 110.12956 * 0.41861 * 23 22 21 26 26 C 1.35457 * 107.13005 * 359.74779 * 25 23 22 27 27 Cl 1.73601 * 127.23831 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 29 29 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 30 30 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 31 31 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 32 32 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 33 33 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 34 34 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 35 35 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 36 36 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 37 37 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 38 38 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 39 39 H 1.09001 * 109.46917 * 270.30896 * 24 23 22 40 40 H 1.08991 * 109.47182 * 30.30997 * 24 23 22 41 41 H 1.09003 * 109.46930 * 150.31145 * 24 23 22 42 42 H 1.07997 * 126.43504 * 179.71499 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6635 1.0798 4.9157 21 6 3.2347 -0.9329 5.9534 22 7 3.4400 -2.2350 5.9643 23 7 3.7882 -2.6180 7.1401 24 6 4.0985 -4.0000 7.5146 25 6 3.8209 -1.5580 7.9858 26 6 3.4739 -0.4634 7.2672 27 17 3.3495 1.1715 7.8374 28 1 -0.3633 -1.0272 0.0303 29 1 -0.3633 0.5399 0.8745 30 1 -0.3633 0.4875 -0.9047 31 1 1.3130 -1.4731 -1.5800 32 1 2.3716 -0.0991 -1.9990 33 1 2.3659 -2.2172 -4.2773 34 1 3.7961 -2.1446 1.2133 35 1 4.1932 -0.4492 0.7977 36 1 2.9854 0.8627 2.2436 37 1 1.2749 0.5884 2.6524 38 1 2.7627 -1.6601 3.4934 39 1 3.1877 -4.5005 7.8436 40 1 4.5113 -4.5258 6.6538 41 1 4.8271 -4.0018 8.3253 42 1 4.0753 -1.5822 9.0351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092635508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:10 Heat of formation + Delta-G solvation = 37.876126 kcal Electronic energy + Delta-G solvation = -25130.677979 eV Core-core repulsion = 21366.231498 eV Total energy + Delta-G solvation = -3764.446481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73414 -40.65057 -39.47795 -37.50582 -36.04531 -34.74278 -34.29545 -32.54193 -31.80960 -30.84068 -28.57488 -27.73858 -26.58017 -24.81369 -23.58800 -22.61296 -21.66519 -21.49155 -20.60746 -19.12532 -18.71131 -17.61152 -17.45496 -17.20641 -16.62202 -16.26438 -15.83428 -15.62527 -15.55555 -15.03707 -14.71784 -14.57345 -14.34755 -14.14330 -13.84403 -13.49756 -13.42779 -13.25343 -13.08813 -12.86104 -12.80928 -12.68258 -12.62110 -12.39548 -11.92993 -11.85364 -11.75967 -11.55949 -11.42217 -11.36074 -11.00313 -10.67668 -10.43433 -10.09064 -9.81163 -8.88176 -7.84974 -5.19461 0.38687 0.85240 0.96054 1.45759 1.47626 1.56607 1.70265 2.16559 2.25652 2.49865 3.32227 3.33525 3.61514 3.68105 3.79342 3.93744 3.94423 3.97787 4.32418 4.37803 4.43707 4.47118 4.51636 4.61557 4.73984 4.74488 4.78350 4.86124 4.88222 4.97932 5.09542 5.15914 5.34245 5.37603 5.47112 5.49172 5.66221 5.72445 5.83020 6.21186 6.39202 6.71943 7.11306 7.13146 7.78810 8.44249 9.25758 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.002781 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.426702 B =10064.798635 C =11315.549956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.245 4.245 7 H 0.081 0.919 8 C -0.065 4.065 9 N -0.949 5.949 10 Si 0.977 3.023 11 H -0.285 1.285 12 H -0.296 1.296 13 H -0.268 1.268 14 C 0.138 3.862 15 C -0.090 4.090 16 H 0.087 0.913 17 C 0.145 3.855 18 N -0.705 5.705 19 C 0.595 3.405 20 O -0.553 6.553 21 C -0.031 4.031 22 N -0.258 5.258 23 N -0.270 5.270 24 C 0.074 3.926 25 C 0.022 3.978 26 C -0.133 4.133 27 Cl -0.021 7.021 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.019 0.981 32 H -0.002 1.002 33 H 0.247 0.753 34 H 0.044 0.956 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.412 0.588 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -2.743 27.825 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.095 0.905 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.373 4.373 7 H 0.099 0.901 8 C -0.258 4.258 9 N -0.597 5.597 10 Si 0.806 3.194 11 H -0.212 1.212 12 H -0.222 1.222 13 H -0.193 1.193 14 C 0.013 3.987 15 C -0.109 4.109 16 H 0.106 0.894 17 C 0.022 3.978 18 N -0.356 5.356 19 C 0.379 3.621 20 O -0.430 6.430 21 C -0.190 4.190 22 N -0.096 5.096 23 N -0.059 5.059 24 C -0.063 4.063 25 C -0.122 4.122 26 C -0.170 4.170 27 Cl 0.007 6.993 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.017 0.983 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.255 -2.915 27.080 27.237 hybrid contribution 0.544 -0.108 -0.745 0.929 sum 0.800 -3.023 26.335 26.520 Atomic orbital electron populations 1.21642 0.92926 1.01724 1.02180 1.22315 0.97038 0.98604 0.94031 0.90543 1.20993 0.88206 0.91916 0.92267 1.44794 1.32807 1.51385 1.06490 1.19452 1.04926 1.18568 0.94399 0.90134 1.25663 0.99812 1.02059 0.98277 1.70203 1.31810 1.44014 1.13717 0.85075 0.78218 0.78748 0.77391 1.21221 1.22234 1.19298 1.21742 0.95113 0.97368 0.84469 1.22463 0.97023 0.98298 0.93146 0.89431 1.21244 1.00715 0.92965 0.82911 1.45828 1.68667 1.12797 1.08351 1.17060 0.77027 0.86132 0.81835 1.90803 1.52774 1.14804 1.84617 1.21751 1.11428 0.90784 0.95064 1.73608 1.16768 1.12290 1.06965 1.45952 1.44957 1.10663 1.04293 1.22784 1.05134 0.73771 1.04614 1.23254 1.04848 0.84285 0.99807 1.21084 1.13330 0.89303 0.93312 1.98354 1.96944 1.16102 1.87851 0.93245 0.90548 0.92732 0.96319 0.98334 0.94411 0.93761 0.96549 0.91911 0.90161 0.75192 0.87486 0.88016 0.84686 0.74690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.13 71.98 0.66 -3.22 16 2 C -0.10 -3.66 3.01 -9.60 -0.03 -3.69 16 3 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 4 C 0.19 9.59 4.98 86.73 0.43 10.02 16 5 N -0.63 -32.94 3.39 -692.00 -2.35 -35.29 16 6 C -0.24 -13.96 10.26 84.03 0.86 -13.10 16 7 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 8 C -0.06 -3.76 5.48 84.86 0.46 -3.29 16 9 N -0.95 -57.91 10.36 21.65 0.22 -57.68 16 10 Si 0.98 46.23 29.56 68.60 2.03 48.26 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 C 0.14 5.69 6.65 86.86 0.58 6.27 16 15 C -0.09 -2.99 2.49 -9.40 -0.02 -3.02 16 16 H 0.09 2.85 8.04 -2.39 -0.02 2.83 16 17 C 0.15 4.26 5.14 86.38 0.44 4.70 16 18 N -0.71 -19.87 5.50 -466.13 -2.56 -22.43 16 19 C 0.59 18.25 7.82 86.73 0.68 18.93 16 20 O -0.55 -19.90 15.87 -3.96 -0.06 -19.96 16 21 C -0.03 -0.81 7.13 42.45 0.30 -0.51 16 22 N -0.26 -5.65 11.66 -48.17 -0.56 -6.22 16 23 N -0.27 -3.66 3.72 -368.86 -1.37 -5.03 16 24 C 0.07 0.20 11.32 127.77 1.45 1.64 16 25 C 0.02 0.29 11.49 83.46 0.96 1.25 16 26 C -0.13 -2.93 6.80 22.44 0.15 -2.78 16 27 Cl -0.02 -0.49 28.17 -2.72 -0.08 -0.57 16 28 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.02 1.04 6.98 -2.39 -0.02 1.02 16 32 H 0.00 -0.09 7.61 -2.39 -0.02 -0.11 16 33 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.02 0.70 7.91 -2.39 -0.02 0.68 16 36 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.41 10.75 8.19 -92.71 -0.76 9.99 16 39 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.13 -0.57 8.13 -2.39 -0.02 -0.59 16 42 H 0.24 0.66 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -78.76 365.31 2.47 -76.29 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.28 Total: 9.42 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.92 Total: 13.21 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -6.62 Total: -126.64 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.96 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -78.76 2.47 -76.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092635508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.164 kcal (2) G-P(sol) polarization free energy of solvation -78.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds